Protein–RNA interactions for Protein: P18858

LIG1, DNA ligase 1, humanhuman

Predictions only

Length 919 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1P18858 RNU6-1243P-201ENST00000364028 107 ntBASIC5.39□□□□□ -1.55
LIG1P18858 AL133270.1-201ENST00000402635 279 ntBASIC5.39□□□□□ -1.55
LIG1P18858 AC068533.1-201ENST00000418542 415 ntBASIC5.39□□□□□ -1.55
LIG1P18858 FTH1P6-201ENST00000430768 320 ntBASIC5.39□□□□□ -1.55
LIG1P18858 MTCYBP9-201ENST00000431021 303 ntBASIC5.39□□□□□ -1.55
LIG1P18858 AL359265.2-201ENST00000434367 631 ntBASIC5.39□□□□□ -1.55
LIG1P18858 AF228730.2-201ENST00000438784 848 ntBASIC5.39□□□□□ -1.55
LIG1P18858 Y_RNA.653-201ENST00000459091 95 ntBASIC5.39□□□□□ -1.55
LIG1P18858 MRPL36-203ENST00000505818 595 ntAPPRIS P1 TSL 3 BASIC5.39□□□□□ -1.55
LIG1P18858 MTCYBP40-201ENST00000509390 1135 ntBASIC5.39□□□□□ -1.55
LIG1P18858 AC021146.3-201ENST00000511911 260 ntBASIC5.39□□□□□ -1.55
LIG1P18858 RN7SKP24-201ENST00000515888 284 ntBASIC5.39□□□□□ -1.55
LIG1P18858 RNU6-1038P-201ENST00000516516 104 ntBASIC5.39□□□□□ -1.55
LIG1P18858 AC087439.1-201ENST00000517920 398 ntTSL 3 BASIC5.39□□□□□ -1.55
LIG1P18858 AC024681.2-201ENST00000523525 204 ntTSL 5 BASIC5.39□□□□□ -1.55
LIG1P18858 AL352955.1-201ENST00000555490 332 ntTSL 3 BASIC5.39□□□□□ -1.55
LIG1P18858 LINC01897-203ENST00000591503 369 ntTSL 2 BASIC5.39□□□□□ -1.55
LIG1P18858 SRD5A3-AS1-204ENST00000592823 542 ntTSL 5 BASIC5.39□□□□□ -1.55
LIG1P18858 LINC00907-211ENST00000601948 795 ntTSL 5 BASIC5.39□□□□□ -1.55
LIG1P18858 Z82243.1-201ENST00000609432 473 ntBASIC5.39□□□□□ -1.55
LIG1P18858 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC5.39□□□□□ -1.55
LIG1P18858 AC011155.2-201ENST00000623202 216 ntBASIC5.39□□□□□ -1.55
LIG1P18858 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC5.39□□□□□ -1.55
LIG1P18858 PSG8-202ENST00000401467 1686 ntTSL 5 BASIC5.39□□□□□ -1.55
LIG1P18858 MAPK10-263ENST00000641052 4307 ntBASIC5.39□□□□□ -1.55
LIG1P18858 AC244517.1-201ENST00000606030 2086 ntBASIC5.39□□□□□ -1.55
LIG1P18858 MS4A1-202ENST00000389939 3372 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
LIG1P18858 SCAF11-212ENST00000549162 3934 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
LIG1P18858 EMSY-207ENST00000525919 4074 ntAPPRIS ALT1 TSL 1 (best) BASIC5.38□□□□□ -1.55
LIG1P18858 CD200R1-204ENST00000471858 3679 ntAPPRIS ALT2 TSL 1 (best) BASIC5.38□□□□□ -1.55
LIG1P18858 LINC00276-202ENST00000418420 3503 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
LIG1P18858 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC5.38□□□□□ -1.55
LIG1P18858 GALNT3-202ENST00000409882 2107 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
LIG1P18858 MAP3K20-202ENST00000375213 3741 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
LIG1P18858 RNU1-20P-201ENST00000363314 162 ntBASIC5.38□□□□□ -1.55
LIG1P18858 RNA5SP391-201ENST00000363456 119 ntBASIC5.38□□□□□ -1.55
LIG1P18858 U3.30-201ENST00000391308 210 ntBASIC5.38□□□□□ -1.55
LIG1P18858 AL590762.2-201ENST00000395798 571 ntBASIC5.38□□□□□ -1.55
LIG1P18858 RN7SKP167-201ENST00000411047 285 ntBASIC5.38□□□□□ -1.55
LIG1P18858 AC105399.1-201ENST00000422418 418 ntTSL 2 BASIC5.38□□□□□ -1.55
LIG1P18858 RPS6P12-201ENST00000432491 726 ntBASIC5.38□□□□□ -1.55
LIG1P18858 RPL36AP6-201ENST00000435770 321 ntBASIC5.38□□□□□ -1.55
LIG1P18858 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC5.38□□□□□ -1.55
LIG1P18858 AC093579.1-201ENST00000439455 352 ntTSL 2 BASIC5.38□□□□□ -1.55
LIG1P18858 RPL21P133-201ENST00000443666 476 ntBASIC5.38□□□□□ -1.55
LIG1P18858 OR1H1P-201ENST00000448731 937 ntBASIC5.38□□□□□ -1.55
LIG1P18858 AC017101.1-201ENST00000453665 571 ntTSL 4 BASIC5.38□□□□□ -1.55
LIG1P18858 RNU7-59P-201ENST00000459101 61 ntBASIC5.38□□□□□ -1.55
LIG1P18858 AP000926.1-201ENST00000479573 241 ntBASIC5.38□□□□□ -1.55
LIG1P18858 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC5.38□□□□□ -1.55
LIG1P18858 TRBVA-201ENST00000498804 316 ntBASIC5.38□□□□□ -1.55
LIG1P18858 AC017037.2-201ENST00000513850 890 ntBASIC5.38□□□□□ -1.55
LIG1P18858 MTCO2P24-201ENST00000515611 426 ntBASIC5.38□□□□□ -1.55
LIG1P18858 RNA5SP497-201ENST00000516081 97 ntBASIC5.38□□□□□ -1.55
LIG1P18858 RNU6-123P-201ENST00000516163 102 ntBASIC5.38□□□□□ -1.55
LIG1P18858 AC022679.1-202ENST00000520251 376 ntTSL 3 BASIC5.38□□□□□ -1.55
LIG1P18858 AC079098.1-202ENST00000523150 573 ntTSL 5 BASIC5.38□□□□□ -1.55
LIG1P18858 AP003122.3-201ENST00000526316 255 ntBASIC5.38□□□□□ -1.55
LIG1P18858 AC087318.1-201ENST00000536786 389 ntTSL 3 BASIC5.38□□□□□ -1.55
LIG1P18858 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC5.38□□□□□ -1.55
LIG1P18858 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC5.38□□□□□ -1.55
LIG1P18858 MIR4790-201ENST00000577799 79 ntBASIC5.38□□□□□ -1.55
LIG1P18858 RN7SL802P-201ENST00000577858 299 ntBASIC5.38□□□□□ -1.55
LIG1P18858 MIR5699-201ENST00000578903 90 ntBASIC5.38□□□□□ -1.55
LIG1P18858 AC022893.3-201ENST00000607665 437 ntBASIC5.38□□□□□ -1.55
LIG1P18858 AL390240.1-201ENST00000612950 384 ntBASIC5.38□□□□□ -1.55
LIG1P18858 CLCA1-201ENST00000234701 3310 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
LIG1P18858 DMXL2-203ENST00000543779 10400 ntAPPRIS ALT2 TSL 1 (best) BASIC5.38□□□□□ -1.55
LIG1P18858 TRAPPC13-208ENST00000505553 1410 ntAPPRIS ALT1 TSL 1 (best) BASIC5.38□□□□□ -1.55
LIG1P18858 SLC38A9-223ENST00000515629 2673 ntTSL 2 BASIC5.38□□□□□ -1.55
LIG1P18858 WDFY3-201ENST00000295888 14247 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
LIG1P18858 CASC1-205ENST00000545133 2146 ntAPPRIS ALT2 TSL 2 BASIC5.38□□□□□ -1.55
LIG1P18858 EMCN-201ENST00000296420 4037 ntAPPRIS P3 TSL 1 (best) BASIC5.38□□□□□ -1.55
LIG1P18858 RAG2-209ENST00000618712 2818 ntAPPRIS P1 TSL 4 BASIC5.38□□□□□ -1.55
LIG1P18858 FAM197Y9-201ENST00000451062 2332 ntTSL 5 BASIC5.37□□□□□ -1.55
LIG1P18858 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC5.37□□□□□ -1.55
LIG1P18858 RNA5SP28-201ENST00000363841 119 ntBASIC5.37□□□□□ -1.55
LIG1P18858 CARD16-202ENST00000375706 686 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
LIG1P18858 BANF2-202ENST00000377805 444 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
LIG1P18858 GLULP6-201ENST00000399502 913 ntBASIC5.37□□□□□ -1.55
LIG1P18858 LAP3P1-201ENST00000403648 294 ntBASIC5.37□□□□□ -1.55
LIG1P18858 AL139397.2-201ENST00000404529 772 ntBASIC5.37□□□□□ -1.55
LIG1P18858 RNA5SP239-201ENST00000410218 129 ntBASIC5.37□□□□□ -1.55
LIG1P18858 BX323014.1-201ENST00000412876 237 ntBASIC5.37□□□□□ -1.55
LIG1P18858 AL139396.1-201ENST00000421137 167 ntBASIC5.37□□□□□ -1.55
LIG1P18858 AC114814.3-201ENST00000449362 663 ntTSL 2 BASIC5.37□□□□□ -1.55
LIG1P18858 AL353691.1-201ENST00000451332 387 ntBASIC5.37□□□□□ -1.55
LIG1P18858 MRPS31P2-201ENST00000451581 518 ntBASIC5.37□□□□□ -1.55
LIG1P18858 AC092324.1-201ENST00000468671 324 ntBASIC5.37□□□□□ -1.55
LIG1P18858 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC5.37□□□□□ -1.55
LIG1P18858 IGLV2-34-201ENST00000490007 283 ntBASIC5.37□□□□□ -1.55
LIG1P18858 AC231760.1-201ENST00000498002 260 ntBASIC5.37□□□□□ -1.55
LIG1P18858 CCDC34P1-201ENST00000507441 517 ntBASIC5.37□□□□□ -1.55
LIG1P18858 RNA5SP454-201ENST00000517231 127 ntBASIC5.37□□□□□ -1.55
LIG1P18858 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC5.37□□□□□ -1.55
LIG1P18858 AC090136.1-201ENST00000520009 240 ntBASIC5.37□□□□□ -1.55
LIG1P18858 PTP4A1P6-201ENST00000531034 478 ntBASIC5.37□□□□□ -1.55
LIG1P18858 AL137161.1-201ENST00000532231 390 ntBASIC5.37□□□□□ -1.55
LIG1P18858 AC113192.4-201ENST00000534666 547 ntTSL 4 BASIC5.37□□□□□ -1.55
LIG1P18858 AP001880.2-201ENST00000538233 448 ntBASIC5.37□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 93.2 ms