Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 AC083867.1-201ENST00000413567 457 ntTSL 3 BASIC5.33□□□□□ -1.56
CCDC39Q9UFE4 TPMTP2-201ENST00000414372 726 ntBASIC5.33□□□□□ -1.56
CCDC39Q9UFE4 AF241725.1-201ENST00000416182 480 ntTSL 3 BASIC5.33□□□□□ -1.56
CCDC39Q9UFE4 AC004552.1-201ENST00000419089 348 ntBASIC5.33□□□□□ -1.56
CCDC39Q9UFE4 AC024619.1-202ENST00000426489 495 ntTSL 3 BASIC5.33□□□□□ -1.56
CCDC39Q9UFE4 UTS2B-203ENST00000427544 676 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
CCDC39Q9UFE4 BRWD1P3-201ENST00000428816 390 ntBASIC5.33□□□□□ -1.56
CCDC39Q9UFE4 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC5.33□□□□□ -1.56
CCDC39Q9UFE4 RPS20P32-201ENST00000456044 356 ntBASIC5.33□□□□□ -1.56
CCDC39Q9UFE4 RPS26P3-201ENST00000470205 348 ntBASIC5.33□□□□□ -1.56
CCDC39Q9UFE4 AC090543.2-201ENST00000483963 348 ntBASIC5.33□□□□□ -1.56
CCDC39Q9UFE4 AC004057.1-201ENST00000485827 348 ntBASIC5.33□□□□□ -1.56
CCDC39Q9UFE4 AC025445.1-201ENST00000502728 300 ntBASIC5.33□□□□□ -1.56
CCDC39Q9UFE4 AC034234.1-201ENST00000502993 465 ntTSL 3 BASIC5.33□□□□□ -1.56
CCDC39Q9UFE4 AC008638.1-201ENST00000506035 866 ntBASIC5.33□□□□□ -1.56
CCDC39Q9UFE4 AC091868.1-201ENST00000508746 304 ntBASIC5.33□□□□□ -1.56
CCDC39Q9UFE4 AC090151.1-201ENST00000520784 730 ntBASIC5.33□□□□□ -1.56
CCDC39Q9UFE4 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC5.33□□□□□ -1.56
CCDC39Q9UFE4 BNIP3P16-201ENST00000589779 534 ntBASIC5.33□□□□□ -1.56
CCDC39Q9UFE4 LINC01928-201ENST00000591029 504 ntTSL 3 BASIC5.33□□□□□ -1.56
CCDC39Q9UFE4 AC005858.1-201ENST00000620193 677 ntTSL 2 BASIC5.33□□□□□ -1.56
CCDC39Q9UFE4 AC007405.1-203ENST00000623667 932 ntTSL 5 BASIC5.33□□□□□ -1.56
CCDC39Q9UFE4 CCT5-215ENST00000625723 135 ntTSL 5 BASIC5.33□□□□□ -1.56
CCDC39Q9UFE4 AC079062.1-203ENST00000581862 3610 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
CCDC39Q9UFE4 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC5.33□□□□□ -1.56
CCDC39Q9UFE4 AP001267.1-201ENST00000531742 2074 ntTSL 2 BASIC5.33□□□□□ -1.56
CCDC39Q9UFE4 AL031320.2-201ENST00000591892 2079 ntTSL 5 BASIC5.33□□□□□ -1.56
CCDC39Q9UFE4 DDX20-202ENST00000475700 4332 ntTSL 2 BASIC5.33□□□□□ -1.56
CCDC39Q9UFE4 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC5.33□□□□□ -1.56
CCDC39Q9UFE4 LINC02120-201ENST00000505518 2008 ntTSL 1 (best) BASIC5.33□□□□□ -1.56
CCDC39Q9UFE4 OMG-201ENST00000247271 1947 ntAPPRIS P1 TSL 1 (best) BASIC5.33□□□□□ -1.56
CCDC39Q9UFE4 POSTN-210ENST00000541481 3113 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
CCDC39Q9UFE4 CASK-207ENST00000421587 8204 ntAPPRIS ALT2 TSL 1 (best) BASIC5.32□□□□□ -1.56
CCDC39Q9UFE4 C12orf45-204ENST00000552951 23529 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
CCDC39Q9UFE4 Y_RNA.80-201ENST00000362996 102 ntBASIC5.32□□□□□ -1.56
CCDC39Q9UFE4 Y_RNA.117-201ENST00000363294 101 ntBASIC5.32□□□□□ -1.56
CCDC39Q9UFE4 Y_RNA.252-201ENST00000364556 101 ntBASIC5.32□□□□□ -1.56
CCDC39Q9UFE4 BANF2-202ENST00000377805 444 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
CCDC39Q9UFE4 MEIG1-201ENST00000378240 507 ntAPPRIS P1 TSL 2 BASIC5.32□□□□□ -1.56
CCDC39Q9UFE4 RNU6-1151P-201ENST00000384684 107 ntBASIC5.32□□□□□ -1.56
CCDC39Q9UFE4 RNU6-33P-201ENST00000384793 107 ntBASIC5.32□□□□□ -1.56
CCDC39Q9UFE4 RNU6-1109P-201ENST00000391187 107 ntBASIC5.32□□□□□ -1.56
CCDC39Q9UFE4 DHFRP6-201ENST00000401776 268 ntBASIC5.32□□□□□ -1.56
CCDC39Q9UFE4 RNU4-6P-201ENST00000410804 122 ntBASIC5.32□□□□□ -1.56
CCDC39Q9UFE4 Y_RNA.646-201ENST00000410980 101 ntBASIC5.32□□□□□ -1.56
CCDC39Q9UFE4 RPS15AP12-201ENST00000419498 388 ntBASIC5.32□□□□□ -1.56
CCDC39Q9UFE4 SKA2P1-201ENST00000425592 390 ntBASIC5.32□□□□□ -1.56
CCDC39Q9UFE4 AC239809.1-201ENST00000450470 217 ntBASIC5.32□□□□□ -1.56
CCDC39Q9UFE4 AC017101.1-201ENST00000453665 571 ntTSL 4 BASIC5.32□□□□□ -1.56
CCDC39Q9UFE4 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC5.32□□□□□ -1.56
CCDC39Q9UFE4 RPL12P20-201ENST00000475538 479 ntBASIC5.32□□□□□ -1.56
CCDC39Q9UFE4 RPL22P13-201ENST00000493291 347 ntBASIC5.32□□□□□ -1.56
CCDC39Q9UFE4 TRBVA-201ENST00000498804 316 ntBASIC5.32□□□□□ -1.56
CCDC39Q9UFE4 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC5.32□□□□□ -1.56
CCDC39Q9UFE4 SEMA6A-AS2-201ENST00000508766 482 ntTSL 3 BASIC5.32□□□□□ -1.56
CCDC39Q9UFE4 SNORD27.1-201ENST00000516319 72 ntBASIC5.32□□□□□ -1.56
CCDC39Q9UFE4 RN7SKP219-201ENST00000516825 296 ntBASIC5.32□□□□□ -1.56
CCDC39Q9UFE4 RNA5SP337-201ENST00000517007 109 ntBASIC5.32□□□□□ -1.56
CCDC39Q9UFE4 AC011586.1-201ENST00000521055 458 ntTSL 3 BASIC5.32□□□□□ -1.56
CCDC39Q9UFE4 AP000873.2-203ENST00000528524 549 ntTSL 2 BASIC5.32□□□□□ -1.56
CCDC39Q9UFE4 AC110743.1-201ENST00000584870 478 ntBASIC5.32□□□□□ -1.56
CCDC39Q9UFE4 AL139395.1-201ENST00000603662 160 ntBASIC5.32□□□□□ -1.56
CCDC39Q9UFE4 ATP1B3P1-201ENST00000605365 821 ntBASIC5.32□□□□□ -1.56
CCDC39Q9UFE4 AC020634.1-201ENST00000608701 549 ntBASIC5.32□□□□□ -1.56
CCDC39Q9UFE4 AC012409.4-201ENST00000612923 249 ntBASIC5.32□□□□□ -1.56
CCDC39Q9UFE4 5_8S_rRNA.1-201ENST00000614365 152 ntBASIC5.32□□□□□ -1.56
CCDC39Q9UFE4 MIR7155-201ENST00000615925 56 ntBASIC5.32□□□□□ -1.56
CCDC39Q9UFE4 CT45A7-202ENST00000620885 578 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
CCDC39Q9UFE4 CDRT1-208ENST00000630868 794 ntBASIC5.32□□□□□ -1.56
CCDC39Q9UFE4 NEGR1-201ENST00000306821 5577 ntTSL 1 (best) BASIC5.32□□□□□ -1.56
CCDC39Q9UFE4 OR10K1-203ENST00000641432 3775 ntAPPRIS P1 BASIC5.32□□□□□ -1.56
CCDC39Q9UFE4 AC092125.1-201ENST00000562568 1995 ntBASIC5.32□□□□□ -1.56
CCDC39Q9UFE4 NKRF-202ENST00000371527 3741 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
CCDC39Q9UFE4 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC5.32□□□□□ -1.56
CCDC39Q9UFE4 MACF1-231ENST00000564288 24828 ntAPPRIS ALT2 TSL 5 BASIC5.32□□□□□ -1.56
CCDC39Q9UFE4 PNPLA8-204ENST00000426128 4268 ntTSL 5 BASIC5.32□□□□□ -1.56
CCDC39Q9UFE4 RPL34-AS1-202ENST00000507248 3713 ntTSL 2 BASIC5.32□□□□□ -1.56
CCDC39Q9UFE4 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC5.32□□□□□ -1.56
CCDC39Q9UFE4 ADAM18-201ENST00000265707 2388 ntAPPRIS P3 TSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC39Q9UFE4 USP9YP4-201ENST00000424401 1745 ntBASIC5.31□□□□□ -1.56
CCDC39Q9UFE4 ADGRL3-202ENST00000504896 4816 ntTSL 5 BASIC5.31□□□□□ -1.56
CCDC39Q9UFE4 USP34-201ENST00000398571 11357 ntAPPRIS P1 TSL 5 BASIC5.31□□□□□ -1.56
CCDC39Q9UFE4 LZTFL1-216ENST00000539217 4113 ntTSL 2 BASIC5.31□□□□□ -1.56
CCDC39Q9UFE4 Y_RNA.367-201ENST00000365544 101 ntBASIC5.31□□□□□ -1.56
CCDC39Q9UFE4 Y_RNA.463-201ENST00000384271 102 ntBASIC5.31□□□□□ -1.56
CCDC39Q9UFE4 Y_RNA.482-201ENST00000384377 111 ntBASIC5.31□□□□□ -1.56
CCDC39Q9UFE4 RNU6-146P-201ENST00000384602 108 ntBASIC5.31□□□□□ -1.56
CCDC39Q9UFE4 RPL7P60-201ENST00000397636 735 ntBASIC5.31□□□□□ -1.56
CCDC39Q9UFE4 AL645733.1-201ENST00000402250 217 ntBASIC5.31□□□□□ -1.56
CCDC39Q9UFE4 AL606923.1-201ENST00000406616 190 ntBASIC5.31□□□□□ -1.56
CCDC39Q9UFE4 CCDC126-203ENST00000410069 890 ntAPPRIS P1 TSL 1 (best) BASIC5.31□□□□□ -1.56
CCDC39Q9UFE4 AL591848.1-201ENST00000413092 322 ntBASIC5.31□□□□□ -1.56
CCDC39Q9UFE4 PRELID3BP11-201ENST00000414230 479 ntBASIC5.31□□□□□ -1.56
CCDC39Q9UFE4 AC104777.1-203ENST00000423428 554 ntTSL 3 BASIC5.31□□□□□ -1.56
CCDC39Q9UFE4 AL139824.1-201ENST00000431983 453 ntTSL 3 BASIC5.31□□□□□ -1.56
CCDC39Q9UFE4 RPL12P46-201ENST00000436610 195 ntBASIC5.31□□□□□ -1.56
CCDC39Q9UFE4 AC010157.1-201ENST00000440589 527 ntTSL 4 BASIC5.31□□□□□ -1.56
CCDC39Q9UFE4 AL353748.1-201ENST00000440753 474 ntBASIC5.31□□□□□ -1.56
CCDC39Q9UFE4 AC002381.1-201ENST00000447049 280 ntBASIC5.31□□□□□ -1.56
CCDC39Q9UFE4 PTMAP3-201ENST00000447474 330 ntBASIC5.31□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 130.9 ms