Protein–RNA interactions for Protein: Q9HD42

CHMP1A, Charged multivesicular body protein 1a, humanhuman

Predicted RBP Predictions only

Length 196 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1AQ9HD42 TEX21P-201ENST00000447107 1476 ntBASIC3.28□□□□□ -1.88
CHMP1AQ9HD42 BRCA2-206ENST00000544455 10984 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
CHMP1AQ9HD42 MBNL1-220ENST00000493459 4205 ntTSL 1 (best) BASIC3.28□□□□□ -1.88
CHMP1AQ9HD42 AL391684.1-201ENST00000416191 2998 ntTSL 5 BASIC3.28□□□□□ -1.88
CHMP1AQ9HD42 AC091534.1-201ENST00000548779 1751 ntTSL 2 BASIC3.28□□□□□ -1.88
CHMP1AQ9HD42 MIS12-201ENST00000381165 2505 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
CHMP1AQ9HD42 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
CHMP1AQ9HD42 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
CHMP1AQ9HD42 MIR591-201ENST00000385290 95 ntBASIC3.28□□□□□ -1.88
CHMP1AQ9HD42 RNU6-278P-201ENST00000390945 109 ntBASIC3.28□□□□□ -1.88
CHMP1AQ9HD42 TXNP7-201ENST00000406296 293 ntBASIC3.28□□□□□ -1.88
CHMP1AQ9HD42 RNU6-248P-201ENST00000410720 107 ntBASIC3.28□□□□□ -1.88
CHMP1AQ9HD42 SPA17P1-201ENST00000416656 452 ntBASIC3.28□□□□□ -1.88
CHMP1AQ9HD42 NFIA-AS1-201ENST00000442027 384 ntTSL 2 BASIC3.28□□□□□ -1.88
CHMP1AQ9HD42 AL390961.1-201ENST00000446557 319 ntTSL 2 BASIC3.28□□□□□ -1.88
CHMP1AQ9HD42 GSTA9P-202ENST00000448991 521 ntTSL 3 BASIC3.28□□□□□ -1.88
CHMP1AQ9HD42 AL354754.1-201ENST00000449730 625 ntTSL 3 BASIC3.28□□□□□ -1.88
CHMP1AQ9HD42 AC010891.1-201ENST00000449963 448 ntTSL 2 BASIC3.28□□□□□ -1.88
CHMP1AQ9HD42 AL033528.1-201ENST00000453780 140 ntBASIC3.28□□□□□ -1.88
CHMP1AQ9HD42 MTND4LP3-201ENST00000468320 276 ntBASIC3.28□□□□□ -1.88
CHMP1AQ9HD42 RAP1BP2-201ENST00000478270 544 ntBASIC3.28□□□□□ -1.88
CHMP1AQ9HD42 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC3.28□□□□□ -1.88
CHMP1AQ9HD42 AC117460.1-201ENST00000508964 467 ntTSL 3 BASIC3.28□□□□□ -1.88
CHMP1AQ9HD42 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC3.28□□□□□ -1.88
CHMP1AQ9HD42 AC096736.1-201ENST00000512609 947 ntTSL 3 BASIC3.28□□□□□ -1.88
CHMP1AQ9HD42 GMPSP1-201ENST00000514075 579 ntBASIC3.28□□□□□ -1.88
CHMP1AQ9HD42 RNU6-840P-201ENST00000517275 65 ntBASIC3.28□□□□□ -1.88
CHMP1AQ9HD42 RNA5SP179-201ENST00000517284 121 ntBASIC3.28□□□□□ -1.88
CHMP1AQ9HD42 AP000442.2-202ENST00000531311 601 ntTSL 3 BASIC3.28□□□□□ -1.88
CHMP1AQ9HD42 CYCSP29-201ENST00000533731 318 ntBASIC3.28□□□□□ -1.88
CHMP1AQ9HD42 AC008011.1-201ENST00000545989 227 ntBASIC3.28□□□□□ -1.88
CHMP1AQ9HD42 AC107023.1-201ENST00000552757 356 ntTSL 5 BASIC3.28□□□□□ -1.88
CHMP1AQ9HD42 AL160237.1-201ENST00000554526 572 ntTSL 4 BASIC3.28□□□□□ -1.88
CHMP1AQ9HD42 AC020891.1-201ENST00000558785 174 ntTSL 3 BASIC3.28□□□□□ -1.88
CHMP1AQ9HD42 AC016987.2-201ENST00000560696 351 ntTSL 3 BASIC3.28□□□□□ -1.88
CHMP1AQ9HD42 AC046158.1-201ENST00000563408 719 ntTSL 3 BASIC3.28□□□□□ -1.88
CHMP1AQ9HD42 AC129492.2-201ENST00000577807 517 ntTSL 3 BASIC3.28□□□□□ -1.88
CHMP1AQ9HD42 AC008946.1-201ENST00000599756 421 ntTSL 3 BASIC3.28□□□□□ -1.88
CHMP1AQ9HD42 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC3.28□□□□□ -1.88
CHMP1AQ9HD42 AC015871.2-201ENST00000603605 948 ntBASIC3.28□□□□□ -1.88
CHMP1AQ9HD42 AC091167.4-201ENST00000605079 184 ntBASIC3.28□□□□□ -1.88
CHMP1AQ9HD42 AP000860.1-201ENST00000605250 559 ntBASIC3.28□□□□□ -1.88
CHMP1AQ9HD42 AL662844.3-201ENST00000606909 517 ntTSL 5 BASIC3.28□□□□□ -1.88
CHMP1AQ9HD42 AC131902.3-201ENST00000611767 581 ntBASIC3.28□□□□□ -1.88
CHMP1AQ9HD42 AC008250.2-201ENST00000615261 205 ntBASIC3.28□□□□□ -1.88
CHMP1AQ9HD42 AC010133.1-201ENST00000615809 842 ntBASIC3.28□□□□□ -1.88
CHMP1AQ9HD42 AC009509.4-201ENST00000619202 509 ntBASIC3.28□□□□□ -1.88
CHMP1AQ9HD42 ZRANB2-AS2-221ENST00000624050 629 ntTSL 5 BASIC3.28□□□□□ -1.88
CHMP1AQ9HD42 AC090582.1-201ENST00000636321 199 ntBASIC3.28□□□□□ -1.88
CHMP1AQ9HD42 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC3.28□□□□□ -1.88
CHMP1AQ9HD42 PLSCR5-201ENST00000443512 1969 ntAPPRIS P1 TSL 1 (best) BASIC3.28□□□□□ -1.88
CHMP1AQ9HD42 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC3.28□□□□□ -1.88
CHMP1AQ9HD42 LINC01094-203ENST00000504675 1985 ntTSL 2 BASIC3.28□□□□□ -1.88
CHMP1AQ9HD42 MUC15-201ENST00000281268 2968 ntTSL 5 BASIC3.28□□□□□ -1.88
CHMP1AQ9HD42 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC3.28□□□□□ -1.88
CHMP1AQ9HD42 CCDC30-203ENST00000428554 3063 ntAPPRIS P2 TSL 5 BASIC3.28□□□□□ -1.89
CHMP1AQ9HD42 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
CHMP1AQ9HD42 SDAD1P2-201ENST00000441308 2028 ntBASIC3.27□□□□□ -1.89
CHMP1AQ9HD42 BCLAF3-202ENST00000379682 3217 ntAPPRIS ALT2 TSL 5 BASIC3.27□□□□□ -1.89
CHMP1AQ9HD42 TRMT10A-203ENST00000394877 3516 ntAPPRIS P1 TSL 2 BASIC3.27□□□□□ -1.89
CHMP1AQ9HD42 PEX3-201ENST00000367591 1969 ntAPPRIS P1 TSL 1 (best) BASIC3.27□□□□□ -1.89
CHMP1AQ9HD42 SPEF2-203ENST00000440995 5964 ntAPPRIS ALT2 TSL 5 BASIC3.27□□□□□ -1.89
CHMP1AQ9HD42 CSNK1G3-203ENST00000361991 2424 ntAPPRIS P3 TSL 1 (best) BASIC3.27□□□□□ -1.89
CHMP1AQ9HD42 OR1S2-201ENST00000302592 978 ntBASIC3.27□□□□□ -1.89
CHMP1AQ9HD42 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC3.27□□□□□ -1.89
CHMP1AQ9HD42 U8.3-201ENST00000363321 132 ntBASIC3.27□□□□□ -1.89
CHMP1AQ9HD42 RNA5SP97-201ENST00000365006 84 ntBASIC3.27□□□□□ -1.89
CHMP1AQ9HD42 SNORA75-201ENST00000384158 137 ntBASIC3.27□□□□□ -1.89
CHMP1AQ9HD42 RNU4-6P-201ENST00000410804 122 ntBASIC3.27□□□□□ -1.89
CHMP1AQ9HD42 AC016907.1-201ENST00000419483 435 ntBASIC3.27□□□□□ -1.89
CHMP1AQ9HD42 NDUFB4P7-201ENST00000423198 363 ntBASIC3.27□□□□□ -1.89
CHMP1AQ9HD42 LINC01934-202ENST00000424170 686 ntTSL 4 BASIC3.27□□□□□ -1.89
CHMP1AQ9HD42 AC019097.1-201ENST00000424783 735 ntBASIC3.27□□□□□ -1.89
CHMP1AQ9HD42 AL512656.1-201ENST00000427492 401 ntTSL 2 BASIC3.27□□□□□ -1.89
CHMP1AQ9HD42 AL078601.2-201ENST00000429444 474 ntTSL 2 BASIC3.27□□□□□ -1.89
CHMP1AQ9HD42 AC239803.1-202ENST00000432038 590 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
CHMP1AQ9HD42 AL138900.2-201ENST00000434098 156 ntTSL 3 BASIC3.27□□□□□ -1.89
CHMP1AQ9HD42 KATNBL1P3-201ENST00000443475 909 ntBASIC3.27□□□□□ -1.89
CHMP1AQ9HD42 MTATP6P30-201ENST00000443540 664 ntBASIC3.27□□□□□ -1.89
CHMP1AQ9HD42 AC006458.1-201ENST00000445093 653 ntTSL 3 BASIC3.27□□□□□ -1.89
CHMP1AQ9HD42 AC140076.1-201ENST00000449897 361 ntBASIC3.27□□□□□ -1.89
CHMP1AQ9HD42 LINC01813-201ENST00000451034 712 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
CHMP1AQ9HD42 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC3.27□□□□□ -1.89
CHMP1AQ9HD42 SSXP1-201ENST00000453640 473 ntBASIC3.27□□□□□ -1.89
CHMP1AQ9HD42 AC092620.2-201ENST00000458007 744 ntTSL 2 BASIC3.27□□□□□ -1.89
CHMP1AQ9HD42 U3.44-201ENST00000458938 192 ntBASIC3.27□□□□□ -1.89
CHMP1AQ9HD42 RPS29P22-201ENST00000472363 168 ntBASIC3.27□□□□□ -1.89
CHMP1AQ9HD42 AC006463.2-201ENST00000473326 348 ntBASIC3.27□□□□□ -1.89
CHMP1AQ9HD42 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC3.27□□□□□ -1.89
CHMP1AQ9HD42 LARP1BP2-201ENST00000486594 519 ntBASIC3.27□□□□□ -1.89
CHMP1AQ9HD42 TRBV12-2-201ENST00000489763 344 ntBASIC3.27□□□□□ -1.89
CHMP1AQ9HD42 AC091167.1-201ENST00000492017 396 ntBASIC3.27□□□□□ -1.89
CHMP1AQ9HD42 CDC42P4-201ENST00000510507 563 ntBASIC3.27□□□□□ -1.89
CHMP1AQ9HD42 AC004704.1-201ENST00000511219 583 ntTSL 3 BASIC3.27□□□□□ -1.89
CHMP1AQ9HD42 ARL2BPP6-201ENST00000512757 439 ntBASIC3.27□□□□□ -1.89
CHMP1AQ9HD42 SLIT2-IT1-201ENST00000515882 601 ntTSL 1 (best) BASIC3.27□□□□□ -1.89
CHMP1AQ9HD42 SCARNA15.2-201ENST00000516409 127 ntBASIC3.27□□□□□ -1.89
CHMP1AQ9HD42 RNU4ATAC15P-201ENST00000516415 126 ntBASIC3.27□□□□□ -1.89
CHMP1AQ9HD42 NRON-201ENST00000517270 370 ntBASIC3.27□□□□□ -1.89
CHMP1AQ9HD42 AC100870.1-201ENST00000522035 505 ntBASIC3.27□□□□□ -1.89
Retrieved 100 of 98,524 protein–RNA pairs in 86.6 ms