Protein–RNA interactions for Protein: Q96N23

CFAP54, Cilia- and flagella-associated protein 54, humanhuman

Predictions only

Length 3,096 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CFAP54Q96N23 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC1.53□□□□□ -2.16
CFAP54Q96N23 RNA5SP138-201ENST00000365098 114 ntBASIC1.53□□□□□ -2.17
CFAP54Q96N23 VTRNA1-3-201ENST00000365645 89 ntBASIC1.53□□□□□ -2.17
CFAP54Q96N23 VN1R108P-201ENST00000431580 830 ntBASIC1.53□□□□□ -2.17
CFAP54Q96N23 AL445305.1-201ENST00000432577 575 ntBASIC1.53□□□□□ -2.17
CFAP54Q96N23 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC1.53□□□□□ -2.17
CFAP54Q96N23 AC009541.1-201ENST00000438279 2662 ntBASIC1.53□□□□□ -2.17
CFAP54Q96N23 MTCO1P14-201ENST00000441695 1559 ntBASIC1.52□□□□□ -2.17
CFAP54Q96N23 TFEC-201ENST00000265440 6628 ntTSL 1 (best) BASIC1.52□□□□□ -2.17
CFAP54Q96N23 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC1.52□□□□□ -2.17
CFAP54Q96N23 HMGB3P2-201ENST00000411913 584 ntBASIC1.52□□□□□ -2.17
CFAP54Q96N23 AL513185.2-201ENST00000425543 193 ntBASIC1.52□□□□□ -2.17
CFAP54Q96N23 AC007560.1-201ENST00000426912 237 ntBASIC1.52□□□□□ -2.17
CFAP54Q96N23 BBIP1-206ENST00000447005 727 ntAPPRIS P1 TSL 2 BASIC1.52□□□□□ -2.17
CFAP54Q96N23 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC1.52□□□□□ -2.17
CFAP54Q96N23 AC027673.1-201ENST00000456245 405 ntBASIC1.52□□□□□ -2.17
CFAP54Q96N23 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC1.52□□□□□ -2.17
CFAP54Q96N23 AL049830.2-201ENST00000480072 201 ntBASIC1.52□□□□□ -2.17
CFAP54Q96N23 AC109486.1-201ENST00000486833 374 ntBASIC1.52□□□□□ -2.17
CFAP54Q96N23 AC026780.2-201ENST00000503489 730 ntTSL 5 BASIC1.52□□□□□ -2.17
CFAP54Q96N23 AC087373.1-201ENST00000524920 491 ntBASIC1.52□□□□□ -2.17
CFAP54Q96N23 AC090970.3-201ENST00000612566 866 ntBASIC1.52□□□□□ -2.17
CFAP54Q96N23 Clostridiales-1.2-201ENST00000636724 160 ntBASIC1.52□□□□□ -2.17
CFAP54Q96N23 AC021237.1-201ENST00000504175 1643 ntTSL 2 BASIC1.52□□□□□ -2.17
CFAP54Q96N23 OR13C4-201ENST00000277216 957 ntAPPRIS P1 BASIC1.52□□□□□ -2.17
CFAP54Q96N23 RNU6-492P-201ENST00000363035 104 ntBASIC1.52□□□□□ -2.17
CFAP54Q96N23 FNDC3CP-201ENST00000420795 1155 ntBASIC1.52□□□□□ -2.17
CFAP54Q96N23 BX510359.4-201ENST00000423750 193 ntBASIC1.52□□□□□ -2.17
CFAP54Q96N23 AC107015.1-201ENST00000466902 747 ntBASIC1.52□□□□□ -2.17
CFAP54Q96N23 MTND5P4-201ENST00000514978 288 ntBASIC1.52□□□□□ -2.17
CFAP54Q96N23 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC1.52□□□□□ -2.17
CFAP54Q96N23 INTS6-AS1-210ENST00000595424 301 ntTSL 5 BASIC1.52□□□□□ -2.17
CFAP54Q96N23 AC138649.5-201ENST00000637456 137 ntBASIC1.52□□□□□ -2.17
CFAP54Q96N23 DNAH14-210ENST00000439375 13548 ntAPPRIS P1 TSL 5 BASIC1.52□□□□□ -2.17
CFAP54Q96N23 HMGB1P5-201ENST00000255320 642 ntBASIC1.51□□□□□ -2.17
CFAP54Q96N23 RNA5SP27-201ENST00000363839 119 ntBASIC1.51□□□□□ -2.17
CFAP54Q96N23 SNORD48-201ENST00000364953 64 ntBASIC1.51□□□□□ -2.17
CFAP54Q96N23 CD3D-202ENST00000392884 476 ntTSL 2 BASIC1.51□□□□□ -2.17
CFAP54Q96N23 ARF4P2-201ENST00000430209 526 ntBASIC1.51□□□□□ -2.17
CFAP54Q96N23 AC009158.1-207ENST00000432973 394 ntTSL 5 BASIC1.51□□□□□ -2.17
CFAP54Q96N23 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC1.51□□□□□ -2.17
CFAP54Q96N23 RPS29P29-201ENST00000456396 171 ntBASIC1.51□□□□□ -2.17
CFAP54Q96N23 AC011124.1-204ENST00000522265 562 ntTSL 4 BASIC1.51□□□□□ -2.17
CFAP54Q96N23 AL359094.1-202ENST00000629917 1113 ntTSL 5 BASIC1.51□□□□□ -2.17
CFAP54Q96N23 USP15-203ENST00000353364 14950 ntAPPRIS P3 TSL 1 (best) BASIC1.51□□□□□ -2.17
CFAP54Q96N23 Y_RNA.258-201ENST00000364613 105 ntBASIC1.51□□□□□ -2.17
CFAP54Q96N23 OR1A2-201ENST00000381951 930 ntAPPRIS P1 BASIC1.51□□□□□ -2.17
CFAP54Q96N23 BCL2L15-203ENST00000393320 276 ntTSL 1 (best) BASIC1.51□□□□□ -2.17
CFAP54Q96N23 EBAG9P1-201ENST00000418955 543 ntBASIC1.51□□□□□ -2.17
CFAP54Q96N23 AIMP1P2-201ENST00000425294 312 ntBASIC1.51□□□□□ -2.17
CFAP54Q96N23 NEK4P1-201ENST00000433383 879 ntBASIC1.51□□□□□ -2.17
CFAP54Q96N23 AL645568.3-201ENST00000433683 316 ntBASIC1.51□□□□□ -2.17
CFAP54Q96N23 AC021146.7-201ENST00000509604 775 ntBASIC1.51□□□□□ -2.17
CFAP54Q96N23 TIMM9-203ENST00000555061 598 ntAPPRIS P1 TSL 1 (best) BASIC1.51□□□□□ -2.17
CFAP54Q96N23 CYP3A137P-201ENST00000562436 69 ntBASIC1.51□□□□□ -2.17
CFAP54Q96N23 MIR3670-2-201ENST00000582974 65 ntBASIC1.51□□□□□ -2.17
CFAP54Q96N23 MIR3670-1-201ENST00000584160 65 ntBASIC1.51□□□□□ -2.17
CFAP54Q96N23 MIR3670-3-201ENST00000584855 65 ntBASIC1.51□□□□□ -2.17
CFAP54Q96N23 MIR3670-4-201ENST00000612260 65 ntBASIC1.51□□□□□ -2.17
CFAP54Q96N23 LINC01040-201ENST00000425048 666 ntTSL 2 BASIC1.51□□□□□ -2.17
CFAP54Q96N23 MTCO3P30-201ENST00000426425 670 ntBASIC1.51□□□□□ -2.17
CFAP54Q96N23 EZH2P1-201ENST00000431167 291 ntBASIC1.51□□□□□ -2.17
CFAP54Q96N23 HMGB1P12-201ENST00000438594 598 ntBASIC1.51□□□□□ -2.17
CFAP54Q96N23 AL139081.1-201ENST00000452207 382 ntTSL 3 BASIC1.51□□□□□ -2.17
CFAP54Q96N23 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC1.51□□□□□ -2.17
CFAP54Q96N23 LNX1-AS2-201ENST00000502410 347 ntTSL 5 BASIC1.51□□□□□ -2.17
CFAP54Q96N23 AP003049.2-202ENST00000532929 803 ntTSL 3 BASIC1.51□□□□□ -2.17
CFAP54Q96N23 AC099778.2-201ENST00000610904 211 ntBASIC1.51□□□□□ -2.17
CFAP54Q96N23 AC006026.1-201ENST00000444025 1803 ntBASIC1.5□□□□□ -2.17
CFAP54Q96N23 FAR1-204ENST00000532502 5820 ntTSL 2 BASIC1.5□□□□□ -2.17
CFAP54Q96N23 MIR373-201ENST00000362273 69 ntBASIC1.5□□□□□ -2.17
CFAP54Q96N23 Y_RNA.303-201ENST00000364998 94 ntBASIC1.5□□□□□ -2.17
CFAP54Q96N23 RN7SKP101-201ENST00000411376 320 ntBASIC1.5□□□□□ -2.17
CFAP54Q96N23 CKS1BP5-201ENST00000434172 273 ntBASIC1.5□□□□□ -2.17
CFAP54Q96N23 AL162388.1-201ENST00000450912 352 ntBASIC1.5□□□□□ -2.17
CFAP54Q96N23 TTTY19-201ENST00000453955 269 ntTSL 1 (best) BASIC1.5□□□□□ -2.17
CFAP54Q96N23 NDUFB4P9-201ENST00000511646 388 ntBASIC1.5□□□□□ -2.17
CFAP54Q96N23 AC098657.3-201ENST00000620434 263 ntBASIC1.5□□□□□ -2.17
CFAP54Q96N23 NF1-214ENST00000490416 1329 ntTSL 3 BASIC1.5□□□□□ -2.17
CFAP54Q96N23 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC1.5□□□□□ -2.17
CFAP54Q96N23 TEX21P-201ENST00000447107 1476 ntBASIC1.5□□□□□ -2.17
CFAP54Q96N23 VBP1-204ENST00000625964 1547 ntTSL 5 BASIC1.5□□□□□ -2.17
CFAP54Q96N23 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC1.5□□□□□ -2.17
CFAP54Q96N23 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC1.5□□□□□ -2.17
CFAP54Q96N23 Y_RNA.471-201ENST00000384312 102 ntBASIC1.5□□□□□ -2.17
CFAP54Q96N23 AP001117.1-201ENST00000428205 609 ntTSL 2 BASIC1.5□□□□□ -2.17
CFAP54Q96N23 CD69-203ENST00000536709 1020 ntTSL 2 BASIC1.5□□□□□ -2.17
CFAP54Q96N23 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC1.5□□□□□ -2.17
CFAP54Q96N23 AC107031.1-201ENST00000604939 347 ntTSL 2 BASIC1.5□□□□□ -2.17
CFAP54Q96N23 AL591441.2-201ENST00000620059 535 ntTSL 5 BASIC1.5□□□□□ -2.17
CFAP54Q96N23 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC1.5□□□□□ -2.17
CFAP54Q96N23 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC1.5□□□□□ -2.17
CFAP54Q96N23 AC007256.1-201ENST00000392253 2765 ntBASIC1.49□□□□□ -2.17
CFAP54Q96N23 Y_RNA.274-201ENST00000364714 101 ntBASIC1.49□□□□□ -2.17
CFAP54Q96N23 RNU4-91P-201ENST00000364778 135 ntBASIC1.49□□□□□ -2.17
CFAP54Q96N23 AC005297.2-201ENST00000450430 606 ntBASIC1.49□□□□□ -2.17
CFAP54Q96N23 MS4A4E-204ENST00000526086 460 ntTSL 1 (best) BASIC1.49□□□□□ -2.17
CFAP54Q96N23 HMGB3P26-201ENST00000560051 582 ntBASIC1.49□□□□□ -2.17
CFAP54Q96N23 AC105245.1-201ENST00000581934 244 ntBASIC1.49□□□□□ -2.17
CFAP54Q96N23 AC015908.2-202ENST00000585243 756 ntTSL 3 BASIC1.49□□□□□ -2.17
Retrieved 100 of 98,524 protein–RNA pairs in 105.7 ms