Protein–RNA interactions for Protein: Q96MF4

CCDC140, Coiled-coil domain-containing protein 140, humanhuman

Predictions only

Length 163 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC140Q96MF4 PRKAA1-204ENST00000397128 5088 ntAPPRIS P1 TSL 1 (best) BASIC4.21□□□□□ -1.74
CCDC140Q96MF4 SDC2-204ENST00000519914 1318 ntTSL 2 BASIC4.21□□□□□ -1.74
CCDC140Q96MF4 SEC31A-217ENST00000505984 3596 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
CCDC140Q96MF4 LYVE1-201ENST00000256178 3273 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
CCDC140Q96MF4 MCM9-209ENST00000619706 4822 ntAPPRIS P1 TSL 5 BASIC4.2□□□□□ -1.74
CCDC140Q96MF4 LINC01091-203ENST00000514823 5262 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
CCDC140Q96MF4 OR10G7-202ENST00000641585 3449 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
CCDC140Q96MF4 GPALPP1-201ENST00000357537 5368 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
CCDC140Q96MF4 LINC01553-203ENST00000521074 4329 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
CCDC140Q96MF4 ZNF230-201ENST00000429154 4115 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
CCDC140Q96MF4 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
CCDC140Q96MF4 RNA5SP319-201ENST00000362768 119 ntBASIC4.2□□□□□ -1.74
CCDC140Q96MF4 RN7SKP124-201ENST00000364730 341 ntBASIC4.2□□□□□ -1.74
CCDC140Q96MF4 GEN1-202ENST00000381254 6367 ntAPPRIS P1 TSL 5 BASIC4.2□□□□□ -1.74
CCDC140Q96MF4 RNU2-33P-201ENST00000410344 192 ntBASIC4.2□□□□□ -1.74
CCDC140Q96MF4 RN7SKP229-201ENST00000410465 302 ntBASIC4.2□□□□□ -1.74
CCDC140Q96MF4 RNU4-6P-201ENST00000410804 122 ntBASIC4.2□□□□□ -1.74
CCDC140Q96MF4 RNU6-325P-201ENST00000411132 105 ntBASIC4.2□□□□□ -1.74
CCDC140Q96MF4 RN7SKP293-201ENST00000411389 296 ntBASIC4.2□□□□□ -1.74
CCDC140Q96MF4 AC096664.2-201ENST00000411843 406 ntBASIC4.2□□□□□ -1.74
CCDC140Q96MF4 LINC01737-201ENST00000412647 403 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
CCDC140Q96MF4 SRSF1P1-201ENST00000424058 520 ntBASIC4.2□□□□□ -1.74
CCDC140Q96MF4 BX276092.3-201ENST00000424182 230 ntBASIC4.2□□□□□ -1.74
CCDC140Q96MF4 AC008267.5-201ENST00000424928 265 ntBASIC4.2□□□□□ -1.74
CCDC140Q96MF4 AC007560.1-201ENST00000426912 237 ntBASIC4.2□□□□□ -1.74
CCDC140Q96MF4 GSTM5P1-201ENST00000434751 660 ntBASIC4.2□□□□□ -1.74
CCDC140Q96MF4 AC105399.1-202ENST00000447303 205 ntBASIC4.2□□□□□ -1.74
CCDC140Q96MF4 NDUFS5P3-201ENST00000450668 321 ntBASIC4.2□□□□□ -1.74
CCDC140Q96MF4 GSTA11P-201ENST00000452866 669 ntBASIC4.2□□□□□ -1.74
CCDC140Q96MF4 BTF3P15-201ENST00000455606 336 ntBASIC4.2□□□□□ -1.74
CCDC140Q96MF4 RN7SL51P-201ENST00000468230 285 ntBASIC4.2□□□□□ -1.74
CCDC140Q96MF4 AC092754.1-201ENST00000472975 479 ntBASIC4.2□□□□□ -1.74
CCDC140Q96MF4 RN7SL466P-201ENST00000497546 295 ntBASIC4.2□□□□□ -1.74
CCDC140Q96MF4 AC078918.1-201ENST00000498515 228 ntBASIC4.2□□□□□ -1.74
CCDC140Q96MF4 RPS4XP20-201ENST00000505751 772 ntBASIC4.2□□□□□ -1.74
CCDC140Q96MF4 AC113155.1-201ENST00000511141 769 ntBASIC4.2□□□□□ -1.74
CCDC140Q96MF4 AC010255.3-204ENST00000514637 454 ntTSL 2 BASIC4.2□□□□□ -1.74
CCDC140Q96MF4 RNU6-307P-201ENST00000516743 106 ntBASIC4.2□□□□□ -1.74
CCDC140Q96MF4 SCARNA16.4-201ENST00000516956 187 ntBASIC4.2□□□□□ -1.74
CCDC140Q96MF4 SNORD116.3-201ENST00000517176 78 ntBASIC4.2□□□□□ -1.74
CCDC140Q96MF4 AP000676.2-201ENST00000529711 301 ntBASIC4.2□□□□□ -1.74
CCDC140Q96MF4 AC103796.1-201ENST00000530663 358 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
CCDC140Q96MF4 MYBPC1-208ENST00000547405 3834 ntAPPRIS ALT2 TSL 1 (best) BASIC4.2□□□□□ -1.74
CCDC140Q96MF4 AC091516.1-201ENST00000549191 703 ntBASIC4.2□□□□□ -1.74
CCDC140Q96MF4 AC039056.1-201ENST00000552704 467 ntTSL 3 BASIC4.2□□□□□ -1.74
CCDC140Q96MF4 AC069029.1-201ENST00000558736 263 ntTSL 2 BASIC4.2□□□□□ -1.74
CCDC140Q96MF4 MIR4273-201ENST00000582824 84 ntBASIC4.2□□□□□ -1.74
CCDC140Q96MF4 AC005899.2-201ENST00000584353 90 ntBASIC4.2□□□□□ -1.74
CCDC140Q96MF4 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC4.2□□□□□ -1.74
CCDC140Q96MF4 MIR3976-201ENST00000606807 139 ntBASIC4.2□□□□□ -1.74
CCDC140Q96MF4 AC000068.2-201ENST00000608816 460 ntBASIC4.2□□□□□ -1.74
CCDC140Q96MF4 AC244107.2-201ENST00000611773 76 ntBASIC4.2□□□□□ -1.74
CCDC140Q96MF4 RNA5SP439-201ENST00000617595 124 ntBASIC4.2□□□□□ -1.74
CCDC140Q96MF4 USP8-202ENST00000396444 19026 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
CCDC140Q96MF4 SLC4A7-206ENST00000428386 7385 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
CCDC140Q96MF4 ZNF658-201ENST00000612867 4160 ntAPPRIS P1 TSL 2 BASIC4.2□□□□□ -1.74
CCDC140Q96MF4 LINC01933-204ENST00000524295 3591 ntTSL 2 BASIC4.2□□□□□ -1.74
CCDC140Q96MF4 OR10D3-203ENST00000641546 3566 ntAPPRIS P1 BASIC4.2□□□□□ -1.74
CCDC140Q96MF4 PTPRD-202ENST00000356435 9472 ntAPPRIS P1 TSL 5 BASIC4.2□□□□□ -1.74
CCDC140Q96MF4 AC009643.2-201ENST00000603543 1448 ntBASIC4.2□□□□□ -1.74
CCDC140Q96MF4 PPP1R9A-206ENST00000433360 5369 ntTSL 1 (best) BASIC4.2□□□□□ -1.74
CCDC140Q96MF4 LCLAT1-203ENST00000379509 4888 ntAPPRIS P1 TSL 1 (best) BASIC4.2□□□□□ -1.74
CCDC140Q96MF4 ADGRF2-202ENST00000398742 4895 ntAPPRIS P1 TSL 5 BASIC4.2□□□□□ -1.74
CCDC140Q96MF4 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC4.19□□□□□ -1.74
CCDC140Q96MF4 FGF1-215ENST00000619447 3818 ntAPPRIS P1 TSL 4 BASIC4.19□□□□□ -1.74
CCDC140Q96MF4 CFAP70-201ENST00000310715 3703 ntAPPRIS P1 TSL 5 BASIC4.19□□□□□ -1.74
CCDC140Q96MF4 FRAS1-207ENST00000512123 15624 ntAPPRIS P1 TSL 5 BASIC4.19□□□□□ -1.74
CCDC140Q96MF4 AC139769.2-201ENST00000599944 2291 ntTSL 2 BASIC4.19□□□□□ -1.74
CCDC140Q96MF4 ABCB5-202ENST00000404938 5811 ntAPPRIS P1 TSL 1 (best) BASIC4.19□□□□□ -1.74
CCDC140Q96MF4 MTX3-204ENST00000617335 6155 ntTSL 2 BASIC4.19□□□□□ -1.74
CCDC140Q96MF4 SEC31A-204ENST00000355196 4104 ntAPPRIS P4 TSL 2 BASIC4.19□□□□□ -1.74
CCDC140Q96MF4 KCNJ10-205ENST00000638728 4351 ntAPPRIS P1 TSL 5 BASIC4.19□□□□□ -1.74
CCDC140Q96MF4 MIR133B-201ENST00000362210 119 ntBASIC4.19□□□□□ -1.74
CCDC140Q96MF4 Y_RNA.133-201ENST00000363428 110 ntBASIC4.19□□□□□ -1.74
CCDC140Q96MF4 RNU6-933P-201ENST00000384424 107 ntBASIC4.19□□□□□ -1.74
CCDC140Q96MF4 Y_RNA.496-201ENST00000384444 101 ntBASIC4.19□□□□□ -1.74
CCDC140Q96MF4 MIR10A-201ENST00000385043 110 ntBASIC4.19□□□□□ -1.74
CCDC140Q96MF4 MIR325-201ENST00000385260 98 ntBASIC4.19□□□□□ -1.74
CCDC140Q96MF4 TRAJ40-201ENST00000390497 61 ntAPPRIS P1 BASIC4.19□□□□□ -1.74
CCDC140Q96MF4 RNU6-985P-201ENST00000410182 104 ntBASIC4.19□□□□□ -1.74
CCDC140Q96MF4 RNU6-55P-201ENST00000411092 107 ntBASIC4.19□□□□□ -1.74
CCDC140Q96MF4 Y_RNA.623-201ENST00000411128 95 ntBASIC4.19□□□□□ -1.74
CCDC140Q96MF4 AC011754.1-201ENST00000415201 491 ntTSL 5 BASIC4.19□□□□□ -1.74
CCDC140Q96MF4 AC079163.1-201ENST00000418416 407 ntTSL 2 BASIC4.19□□□□□ -1.74
CCDC140Q96MF4 AC243428.1-201ENST00000421099 264 ntBASIC4.19□□□□□ -1.74
CCDC140Q96MF4 AL035404.2-201ENST00000424418 304 ntTSL 3 BASIC4.19□□□□□ -1.74
CCDC140Q96MF4 AL358176.2-201ENST00000425769 204 ntBASIC4.19□□□□□ -1.74
CCDC140Q96MF4 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC4.19□□□□□ -1.74
CCDC140Q96MF4 TOMM20P4-201ENST00000427861 435 ntBASIC4.19□□□□□ -1.74
CCDC140Q96MF4 AL158071.1-201ENST00000430315 461 ntBASIC4.19□□□□□ -1.74
CCDC140Q96MF4 VDAC1P3-201ENST00000434069 851 ntBASIC4.19□□□□□ -1.74
CCDC140Q96MF4 AL136140.1-201ENST00000436113 473 ntTSL 3 BASIC4.19□□□□□ -1.74
CCDC140Q96MF4 AC009237.8-201ENST00000445492 379 ntBASIC4.19□□□□□ -1.74
CCDC140Q96MF4 TRBV2-201ENST00000455382 421 ntAPPRIS P1 BASIC4.19□□□□□ -1.74
CCDC140Q96MF4 AC023141.9-201ENST00000458734 412 ntBASIC4.19□□□□□ -1.74
CCDC140Q96MF4 RPS3AP41-201ENST00000462701 778 ntBASIC4.19□□□□□ -1.74
CCDC140Q96MF4 MTATP8P1-201ENST00000467115 207 ntBASIC4.19□□□□□ -1.74
CCDC140Q96MF4 AC100832.1-201ENST00000471945 383 ntBASIC4.19□□□□□ -1.74
CCDC140Q96MF4 RN7SL717P-201ENST00000478343 297 ntBASIC4.19□□□□□ -1.74
CCDC140Q96MF4 TAF8-207ENST00000482432 556 ntTSL 2 BASIC4.19□□□□□ -1.74
Retrieved 100 of 98,524 protein–RNA pairs in 104.5 ms