Protein–RNA interactions for Protein: Q00056

HOXA4, Homeobox protein Hox-A4, humanhuman

Predicted RBP Predictions only

Length 320 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA4Q00056 MIR1302-1-201ENST00000637932 143 ntBASIC3.72□□□□□ -1.81
HOXA4Q00056 CYP3A7-201ENST00000336374 1971 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
HOXA4Q00056 BTBD10P1-201ENST00000549824 1352 ntBASIC3.72□□□□□ -1.81
HOXA4Q00056 THOC2-202ENST00000355725 4930 ntAPPRIS P1 TSL 5 BASIC3.72□□□□□ -1.81
HOXA4Q00056 SPATA31D2P-201ENST00000429999 4388 ntBASIC3.72□□□□□ -1.81
HOXA4Q00056 MTCO1P24-201ENST00000515438 1558 ntBASIC3.72□□□□□ -1.81
HOXA4Q00056 KIF23-206ENST00000558585 2296 ntTSL 2 BASIC3.72□□□□□ -1.81
HOXA4Q00056 IQCH-202ENST00000358767 3062 ntTSL 5 BASIC3.72□□□□□ -1.81
HOXA4Q00056 SOS1-203ENST00000426016 8517 ntAPPRIS P2 TSL 2 BASIC3.72□□□□□ -1.81
HOXA4Q00056 NRK-204ENST00000540278 1687 ntTSL 2 BASIC3.71□□□□□ -1.81
HOXA4Q00056 GABRA1-220ENST00000638159 4088 ntTSL 5 BASIC3.71□□□□□ -1.81
HOXA4Q00056 PCDH15-234ENST00000622048 6820 ntTSL 5 BASIC3.71□□□□□ -1.81
HOXA4Q00056 EIF2AK2-204ENST00000405334 1533 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
HOXA4Q00056 POLK-201ENST00000241436 5911 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
HOXA4Q00056 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC3.71□□□□□ -1.82
HOXA4Q00056 CEP83-202ENST00000397807 2737 ntTSL 5 BASIC3.71□□□□□ -1.82
HOXA4Q00056 LGALS13-201ENST00000221797 602 ntAPPRIS P2 TSL 1 (best) BASIC3.71□□□□□ -1.82
HOXA4Q00056 RNU6-1249P-201ENST00000363237 111 ntBASIC3.71□□□□□ -1.82
HOXA4Q00056 SNORA51.2-201ENST00000364595 132 ntBASIC3.71□□□□□ -1.82
HOXA4Q00056 RNU6-61P-201ENST00000365528 109 ntBASIC3.71□□□□□ -1.82
HOXA4Q00056 TEX35-205ENST00000367643 802 ntAPPRIS ALT2 TSL 2 BASIC3.71□□□□□ -1.82
HOXA4Q00056 Y_RNA.394-201ENST00000383942 103 ntBASIC3.71□□□□□ -1.82
HOXA4Q00056 snosnR66.1-201ENST00000391095 99 ntBASIC3.71□□□□□ -1.82
HOXA4Q00056 MIR921-201ENST00000401133 56 ntBASIC3.71□□□□□ -1.82
HOXA4Q00056 TXNP7-201ENST00000406296 293 ntBASIC3.71□□□□□ -1.82
HOXA4Q00056 RNU4-26P-201ENST00000410270 107 ntBASIC3.71□□□□□ -1.82
HOXA4Q00056 AL078645.1-201ENST00000414377 423 ntTSL 3 BASIC3.71□□□□□ -1.82
HOXA4Q00056 AL161631.1-201ENST00000417933 486 ntBASIC3.71□□□□□ -1.82
HOXA4Q00056 AL161935.1-201ENST00000420945 421 ntTSL 3 BASIC3.71□□□□□ -1.82
HOXA4Q00056 RPL7L1P10-201ENST00000427790 463 ntBASIC3.71□□□□□ -1.82
HOXA4Q00056 DNAJC19P7-201ENST00000428811 344 ntBASIC3.71□□□□□ -1.82
HOXA4Q00056 AC024082.2-201ENST00000434771 238 ntBASIC3.71□□□□□ -1.82
HOXA4Q00056 GAPDHP27-201ENST00000447427 1020 ntBASIC3.71□□□□□ -1.82
HOXA4Q00056 RPL29P29-201ENST00000448725 423 ntBASIC3.71□□□□□ -1.82
HOXA4Q00056 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC3.71□□□□□ -1.82
HOXA4Q00056 LINC01150-201ENST00000455671 315 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
HOXA4Q00056 snoU13.3-201ENST00000459441 104 ntBASIC3.71□□□□□ -1.82
HOXA4Q00056 AC011276.1-201ENST00000469688 323 ntBASIC3.71□□□□□ -1.82
HOXA4Q00056 RPL7P19-201ENST00000469948 618 ntBASIC3.71□□□□□ -1.82
HOXA4Q00056 RPL7P23-201ENST00000493874 747 ntBASIC3.71□□□□□ -1.82
HOXA4Q00056 ATP6V1G1P6-201ENST00000504007 334 ntBASIC3.71□□□□□ -1.82
HOXA4Q00056 LINC02491-201ENST00000504710 403 ntTSL 2 BASIC3.71□□□□□ -1.82
HOXA4Q00056 MTCO3P9-201ENST00000506989 781 ntBASIC3.71□□□□□ -1.82
HOXA4Q00056 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC3.71□□□□□ -1.82
HOXA4Q00056 RNU6-1095P-201ENST00000516148 108 ntBASIC3.71□□□□□ -1.82
HOXA4Q00056 Y_RNA.665-201ENST00000516177 98 ntBASIC3.71□□□□□ -1.82
HOXA4Q00056 RNU6-1092P-201ENST00000516955 87 ntBASIC3.71□□□□□ -1.82
HOXA4Q00056 MYL12AP1-201ENST00000518490 515 ntBASIC3.71□□□□□ -1.82
HOXA4Q00056 AF117829.1-204ENST00000519854 284 ntTSL 3 BASIC3.71□□□□□ -1.82
HOXA4Q00056 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC3.71□□□□□ -1.82
HOXA4Q00056 AC006518.2-202ENST00000544947 297 ntTSL 2 BASIC3.71□□□□□ -1.82
HOXA4Q00056 PRB1-204ENST00000546254 1170 ntAPPRIS ALT2 TSL 5 BASIC3.71□□□□□ -1.82
HOXA4Q00056 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC3.71□□□□□ -1.82
HOXA4Q00056 AL359237.1-202ENST00000556168 487 ntTSL 5 BASIC3.71□□□□□ -1.82
HOXA4Q00056 AL118558.2-201ENST00000556294 238 ntBASIC3.71□□□□□ -1.82
HOXA4Q00056 hsa-mir-3119-1.1-201ENST00000577602 85 ntBASIC3.71□□□□□ -1.82
HOXA4Q00056 AC007687.1-201ENST00000602704 304 ntBASIC3.71□□□□□ -1.82
HOXA4Q00056 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC3.71□□□□□ -1.82
HOXA4Q00056 AC064836.2-201ENST00000609491 462 ntBASIC3.71□□□□□ -1.82
HOXA4Q00056 MIR378J-201ENST00000611988 109 ntBASIC3.71□□□□□ -1.82
HOXA4Q00056 AC092683.2-203ENST00000618807 788 ntTSL 5 BASIC3.71□□□□□ -1.82
HOXA4Q00056 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC3.71□□□□□ -1.82
HOXA4Q00056 AC244196.2-201ENST00000621184 411 ntAPPRIS P1 BASIC3.71□□□□□ -1.82
HOXA4Q00056 AC055839.1-201ENST00000634467 498 ntBASIC3.71□□□□□ -1.82
HOXA4Q00056 AL133216.2-202ENST00000634512 349 ntBASIC3.71□□□□□ -1.82
HOXA4Q00056 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC3.71□□□□□ -1.82
HOXA4Q00056 SLAIN2-205ENST00000512093 4219 ntTSL 5 BASIC3.71□□□□□ -1.82
HOXA4Q00056 AP004289.2-201ENST00000444413 1457 ntBASIC3.71□□□□□ -1.82
HOXA4Q00056 AC092821.1-201ENST00000640129 4180 ntAPPRIS P1 TSL 5 BASIC3.71□□□□□ -1.82
HOXA4Q00056 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
HOXA4Q00056 COPG2-201ENST00000330992 3073 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
HOXA4Q00056 CTXN2-201ENST00000417307 2828 ntAPPRIS P1 TSL 1 (best) BASIC3.71□□□□□ -1.82
HOXA4Q00056 MAPK10-349ENST00000641767 3661 ntBASIC3.71□□□□□ -1.82
HOXA4Q00056 BCLAF1-214ENST00000531224 7263 ntAPPRIS P3 TSL 1 (best) BASIC3.7□□□□□ -1.82
HOXA4Q00056 DNAH8-202ENST00000359357 13864 ntAPPRIS ALT2 TSL 2 BASIC3.7□□□□□ -1.82
HOXA4Q00056 SERPINI2-202ENST00000461846 1514 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
HOXA4Q00056 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
HOXA4Q00056 SLC17A4-203ENST00000439485 3699 ntTSL 5 BASIC3.7□□□□□ -1.82
HOXA4Q00056 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
HOXA4Q00056 C5orf46-201ENST00000318315 506 ntAPPRIS P2 TSL 1 (best) BASIC3.7□□□□□ -1.82
HOXA4Q00056 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
HOXA4Q00056 RNU6-522P-201ENST00000364497 107 ntBASIC3.7□□□□□ -1.82
HOXA4Q00056 Y_RNA.576-201ENST00000384781 102 ntBASIC3.7□□□□□ -1.82
HOXA4Q00056 MIR141-201ENST00000384975 95 ntBASIC3.7□□□□□ -1.82
HOXA4Q00056 TRDJ1-201ENST00000390473 51 ntAPPRIS P1 BASIC3.7□□□□□ -1.82
HOXA4Q00056 ZC3H7A-202ENST00000396516 3845 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
HOXA4Q00056 SOD2P1-201ENST00000396543 562 ntBASIC3.7□□□□□ -1.82
HOXA4Q00056 CTNNA2-204ENST00000409266 432 ntTSL 3 BASIC3.7□□□□□ -1.82
HOXA4Q00056 RNU4-65P-201ENST00000410473 140 ntBASIC3.7□□□□□ -1.82
HOXA4Q00056 ELOCP19-201ENST00000411919 318 ntBASIC3.7□□□□□ -1.82
HOXA4Q00056 NAP1L1P2-201ENST00000414182 1089 ntBASIC3.7□□□□□ -1.82
HOXA4Q00056 AC245028.1-201ENST00000423259 256 ntBASIC3.7□□□□□ -1.82
HOXA4Q00056 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC3.7□□□□□ -1.82
HOXA4Q00056 AC005828.1-201ENST00000431604 524 ntTSL 5 BASIC3.7□□□□□ -1.82
HOXA4Q00056 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC3.7□□□□□ -1.82
HOXA4Q00056 AC076966.1-201ENST00000435560 351 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
HOXA4Q00056 HMGB1P18-201ENST00000438801 619 ntBASIC3.7□□□□□ -1.82
HOXA4Q00056 AL133481.3-201ENST00000456546 333 ntTSL 3 BASIC3.7□□□□□ -1.82
HOXA4Q00056 AC073218.1-201ENST00000458413 171 ntTSL 5 BASIC3.7□□□□□ -1.82
HOXA4Q00056 FO393408.1-201ENST00000458577 582 ntTSL 5 BASIC3.7□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 85.5 ms