Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 RNU105B-201ENST00000364478 208 ntBASIC6.09□□□□□ -1.43
COL9A1P20849 RNA5SP267-201ENST00000364893 126 ntBASIC6.09□□□□□ -1.43
COL9A1P20849 Y_RNA.331-201ENST00000365267 102 ntBASIC6.09□□□□□ -1.43
COL9A1P20849 RPL21P67-201ENST00000402896 478 ntBASIC6.09□□□□□ -1.43
COL9A1P20849 AC118345.1-201ENST00000411785 366 ntTSL 3 BASIC6.09□□□□□ -1.43
COL9A1P20849 TRAPPC2P10-201ENST00000415662 323 ntBASIC6.09□□□□□ -1.43
COL9A1P20849 AL590139.1-201ENST00000416267 400 ntBASIC6.09□□□□□ -1.43
COL9A1P20849 MAP1LC3BP1-201ENST00000417653 379 ntBASIC6.09□□□□□ -1.43
COL9A1P20849 AC078960.1-201ENST00000422160 177 ntTSL 5 BASIC6.09□□□□□ -1.43
COL9A1P20849 WARS2P1-201ENST00000429678 537 ntBASIC6.09□□□□□ -1.43
COL9A1P20849 AL589765.1-201ENST00000457548 386 ntTSL 2 BASIC6.09□□□□□ -1.43
COL9A1P20849 AC087588.1-201ENST00000462203 316 ntBASIC6.09□□□□□ -1.43
COL9A1P20849 RN7SL354P-201ENST00000469282 294 ntBASIC6.09□□□□□ -1.43
COL9A1P20849 RPL26P26-201ENST00000480251 434 ntBASIC6.09□□□□□ -1.43
COL9A1P20849 AC093909.2-201ENST00000505178 437 ntTSL 3 BASIC6.09□□□□□ -1.43
COL9A1P20849 HMGB3P3-201ENST00000510526 400 ntBASIC6.09□□□□□ -1.43
COL9A1P20849 GMPSP1-201ENST00000514075 579 ntBASIC6.09□□□□□ -1.43
COL9A1P20849 RNU6-844P-201ENST00000517175 102 ntBASIC6.09□□□□□ -1.43
COL9A1P20849 AC025871.1-201ENST00000523935 443 ntTSL 2 BASIC6.09□□□□□ -1.43
COL9A1P20849 AC090985.1-201ENST00000554440 480 ntTSL 2 BASIC6.09□□□□□ -1.43
COL9A1P20849 MIR4433B-201ENST00000581329 102 ntBASIC6.09□□□□□ -1.43
COL9A1P20849 AC006116.3-201ENST00000592968 361 ntBASIC6.09□□□□□ -1.43
COL9A1P20849 TBC1D23-202ENST00000394144 3677 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
COL9A1P20849 ZNF343-207ENST00000612935 3675 ntAPPRIS ALT2 TSL 5 BASIC6.09□□□□□ -1.43
COL9A1P20849 MAPRE2-211ENST00000589699 4080 ntAPPRIS ALT1 TSL 2 BASIC6.09□□□□□ -1.43
COL9A1P20849 SLC9A6-212ENST00000637195 4858 ntTSL 5 BASIC6.09□□□□□ -1.44
COL9A1P20849 PINCR-201ENST00000440955 2228 ntTSL 2 BASIC6.09□□□□□ -1.44
COL9A1P20849 MARVELD2-204ENST00000454295 4376 ntTSL 1 (best) BASIC6.09□□□□□ -1.44
COL9A1P20849 ARHGAP28-205ENST00000531294 2171 ntAPPRIS ALT2 TSL 5 BASIC6.08□□□□□ -1.44
COL9A1P20849 AC245407.1-201ENST00000621489 2538 ntTSL 2 BASIC6.08□□□□□ -1.44
COL9A1P20849 USP37-205ENST00000454775 5019 ntAPPRIS P1 TSL 2 BASIC6.08□□□□□ -1.44
COL9A1P20849 OR6N2-202ENST00000641131 3455 ntAPPRIS P1 BASIC6.08□□□□□ -1.44
COL9A1P20849 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
COL9A1P20849 SESN1-201ENST00000302071 2718 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
COL9A1P20849 BDNF-205ENST00000395981 4071 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
COL9A1P20849 ZNF462-201ENST00000277225 10414 ntAPPRIS P2 TSL 1 (best) BASIC6.08□□□□□ -1.44
COL9A1P20849 LINGO2-202ENST00000379992 3044 ntAPPRIS P1 TSL 5 BASIC6.08□□□□□ -1.44
COL9A1P20849 AC135776.4-201ENST00000624300 1904 ntBASIC6.08□□□□□ -1.44
COL9A1P20849 VPS53-204ENST00000437048 13106 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
COL9A1P20849 OR2D2-201ENST00000299459 1110 ntAPPRIS P1 BASIC6.08□□□□□ -1.44
COL9A1P20849 AL353751.1-201ENST00000354541 495 ntTSL 3 BASIC6.08□□□□□ -1.44
COL9A1P20849 RNA5SP319-201ENST00000362768 119 ntBASIC6.08□□□□□ -1.44
COL9A1P20849 RNU6-626P-201ENST00000363354 107 ntBASIC6.08□□□□□ -1.44
COL9A1P20849 RN7SKP113-201ENST00000363891 295 ntBASIC6.08□□□□□ -1.44
COL9A1P20849 RNU6-818P-201ENST00000364837 108 ntBASIC6.08□□□□□ -1.44
COL9A1P20849 TNFRSF17-202ENST00000396495 668 ntAPPRIS ALT2 TSL 1 (best) BASIC6.08□□□□□ -1.44
COL9A1P20849 RPL7AP73-201ENST00000413490 353 ntBASIC6.08□□□□□ -1.44
COL9A1P20849 AL592078.1-201ENST00000421866 321 ntTSL 3 BASIC6.08□□□□□ -1.44
COL9A1P20849 AC009296.1-201ENST00000443146 155 ntBASIC6.08□□□□□ -1.44
COL9A1P20849 RPS27AP3-201ENST00000453803 454 ntBASIC6.08□□□□□ -1.44
COL9A1P20849 IGKV2D-30-201ENST00000474213 395 ntAPPRIS P1 BASIC6.08□□□□□ -1.44
COL9A1P20849 AC114728.1-201ENST00000488289 483 ntBASIC6.08□□□□□ -1.44
COL9A1P20849 RN7SKP49-201ENST00000516675 260 ntBASIC6.08□□□□□ -1.44
COL9A1P20849 SUMO2P18-201ENST00000518873 252 ntBASIC6.08□□□□□ -1.44
COL9A1P20849 TBCA-207ENST00000520039 157 ntTSL 3 BASIC6.08□□□□□ -1.44
COL9A1P20849 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC6.08□□□□□ -1.44
COL9A1P20849 UTS2-201ENST00000054668 420 ntAPPRIS P4 TSL 1 (best) BASIC6.08□□□□□ -1.44
COL9A1P20849 LINC01234-204ENST00000550905 589 ntTSL 3 BASIC6.08□□□□□ -1.44
COL9A1P20849 AL358913.1-201ENST00000554342 121 ntBASIC6.08□□□□□ -1.44
COL9A1P20849 NDUFB4P11-201ENST00000560510 395 ntBASIC6.08□□□□□ -1.44
COL9A1P20849 AC006254.2-201ENST00000603259 279 ntBASIC6.08□□□□□ -1.44
COL9A1P20849 AC123786.2-201ENST00000603459 275 ntBASIC6.08□□□□□ -1.44
COL9A1P20849 LINC01206-214ENST00000610910 456 ntTSL 5 BASIC6.08□□□□□ -1.44
COL9A1P20849 AC132068.1-201ENST00000623805 459 ntBASIC6.08□□□□□ -1.44
COL9A1P20849 AC008873.1-201ENST00000625051 138 ntBASIC6.08□□□□□ -1.44
COL9A1P20849 PARP11-201ENST00000228820 4424 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
COL9A1P20849 KIAA0232-201ENST00000307659 7841 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
COL9A1P20849 POM121L2-202ENST00000444565 3108 ntAPPRIS P2 BASIC6.08□□□□□ -1.44
COL9A1P20849 FAM13C-219ENST00000621119 3400 ntAPPRIS ALT2 TSL 5 BASIC6.08□□□□□ -1.44
COL9A1P20849 SLC10A7-203ENST00000432059 3747 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
COL9A1P20849 AL662795.2-201ENST00000624252 3706 ntBASIC6.08□□□□□ -1.44
COL9A1P20849 AOX3P-204ENST00000491025 2107 ntBASIC6.08□□□□□ -1.44
COL9A1P20849 VWA5A-203ENST00000392748 3419 ntAPPRIS P4 TSL 1 (best) BASIC6.08□□□□□ -1.44
COL9A1P20849 LINC01505-205ENST00000636028 2298 ntTSL 5 BASIC6.08□□□□□ -1.44
COL9A1P20849 PHTF2-208ENST00000450574 2516 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
COL9A1P20849 AQR-201ENST00000156471 9694 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
COL9A1P20849 MUC4-209ENST00000463781 17110 ntAPPRIS ALT2 TSL 5 BASIC6.07□□□□□ -1.44
COL9A1P20849 LNPK-212ENST00000544803 7647 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
COL9A1P20849 C1orf132-203ENST00000608023 15145 ntTSL 5 BASIC6.07□□□□□ -1.44
COL9A1P20849 TCF4-268ENST00000629387 3789 ntAPPRIS ALT1 TSL 5 BASIC6.07□□□□□ -1.44
COL9A1P20849 PLEKHA1-204ENST00000392799 3221 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
COL9A1P20849 ZNF521-203ENST00000538137 4253 ntAPPRIS P1 TSL 2 BASIC6.07□□□□□ -1.44
COL9A1P20849 BDNF-207ENST00000395986 3979 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
COL9A1P20849 NREP-206ENST00000447165 2304 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
COL9A1P20849 TMTC3-201ENST00000266712 7203 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
COL9A1P20849 DDX58-202ENST00000379883 4353 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
COL9A1P20849 OR4D5-201ENST00000307033 1095 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
COL9A1P20849 RN7SKP128-201ENST00000364270 303 ntBASIC6.07□□□□□ -1.44
COL9A1P20849 RNVU1-6-201ENST00000364688 164 ntBASIC6.07□□□□□ -1.44
COL9A1P20849 RNU6-211P-201ENST00000384047 107 ntBASIC6.07□□□□□ -1.44
COL9A1P20849 RNU1-74P-201ENST00000384108 171 ntBASIC6.07□□□□□ -1.44
COL9A1P20849 MIR513C-201ENST00000401352 84 ntBASIC6.07□□□□□ -1.44
COL9A1P20849 AL157834.1-201ENST00000422744 420 ntTSL 3 BASIC6.07□□□□□ -1.44
COL9A1P20849 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC6.07□□□□□ -1.44
COL9A1P20849 AL590399.2-201ENST00000427536 309 ntBASIC6.07□□□□□ -1.44
COL9A1P20849 AC005160.1-201ENST00000432405 381 ntTSL 3 BASIC6.07□□□□□ -1.44
COL9A1P20849 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC6.07□□□□□ -1.44
COL9A1P20849 KNOP1P3-201ENST00000446933 426 ntBASIC6.07□□□□□ -1.44
COL9A1P20849 RNU6-1114P-201ENST00000516022 107 ntBASIC6.07□□□□□ -1.44
COL9A1P20849 RNU7-121P-201ENST00000516604 62 ntBASIC6.07□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 100 ms