Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AC012182.1-201ENST00000570133 895 ntBASIC3.11□□□□□ -1.91
HOXD4P09016 AC118755.1-201ENST00000572923 195 ntTSL 3 BASIC3.11□□□□□ -1.91
HOXD4P09016 MAGOH2P-202ENST00000584384 429 ntBASIC3.11□□□□□ -1.91
HOXD4P09016 AC012493.2-201ENST00000595083 291 ntBASIC3.11□□□□□ -1.91
HOXD4P09016 AL158063.1-201ENST00000615349 536 ntBASIC3.11□□□□□ -1.91
HOXD4P09016 AL354810.1-201ENST00000618134 635 ntTSL 3 BASIC3.11□□□□□ -1.91
HOXD4P09016 AC048347.1-201ENST00000624621 427 ntBASIC3.11□□□□□ -1.91
HOXD4P09016 AC130650.2-201ENST00000618736 2403 ntBASIC3.11□□□□□ -1.91
HOXD4P09016 VIM-AS1-201ENST00000437232 1351 ntTSL 2 BASIC3.11□□□□□ -1.91
HOXD4P09016 DDX43P2-201ENST00000604753 1354 ntBASIC3.11□□□□□ -1.91
HOXD4P09016 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC3.1□□□□□ -1.91
HOXD4P09016 NUP35-203ENST00000409798 1470 ntTSL 2 BASIC3.1□□□□□ -1.91
HOXD4P09016 CCSER2-201ENST00000224756 7664 ntAPPRIS P1 TSL 5 BASIC3.1□□□□□ -1.91
HOXD4P09016 ERBIN-212ENST00000508515 4374 ntTSL 5 BASIC3.1□□□□□ -1.91
HOXD4P09016 TBC1D31-214ENST00000522420 3167 ntTSL 1 (best) BASIC3.1□□□□□ -1.91
HOXD4P09016 RNU4-21P-201ENST00000362802 126 ntBASIC3.1□□□□□ -1.91
HOXD4P09016 RABGGTB-202ENST00000370826 512 ntTSL 2 BASIC3.1□□□□□ -1.91
HOXD4P09016 DHFRP6-201ENST00000401776 268 ntBASIC3.1□□□□□ -1.91
HOXD4P09016 HMGB1P17-201ENST00000403495 628 ntBASIC3.1□□□□□ -1.91
HOXD4P09016 AL138880.1-201ENST00000405824 642 ntBASIC3.1□□□□□ -1.91
HOXD4P09016 RNA5SP107-201ENST00000411358 122 ntBASIC3.1□□□□□ -1.91
HOXD4P09016 HMGB3P23-201ENST00000414981 585 ntBASIC3.1□□□□□ -1.91
HOXD4P09016 SDCBPP3-201ENST00000419629 891 ntBASIC3.1□□□□□ -1.91
HOXD4P09016 GRM7-AS1-201ENST00000420230 430 ntTSL 3 BASIC3.1□□□□□ -1.91
HOXD4P09016 Z99497.1-201ENST00000421282 135 ntBASIC3.1□□□□□ -1.91
HOXD4P09016 DPPA2P1-201ENST00000428060 556 ntBASIC3.1□□□□□ -1.91
HOXD4P09016 LINC00457-201ENST00000428706 413 ntTSL 3 BASIC3.1□□□□□ -1.91
HOXD4P09016 MED14P1-201ENST00000430517 648 ntBASIC3.1□□□□□ -1.91
HOXD4P09016 AL590399.3-201ENST00000438072 543 ntTSL 5 BASIC3.1□□□□□ -1.91
HOXD4P09016 AP000936.2-201ENST00000447151 681 ntBASIC3.1□□□□□ -1.91
HOXD4P09016 BTF3P5-201ENST00000457252 467 ntBASIC3.1□□□□□ -1.91
HOXD4P09016 MEMO1P3-201ENST00000459811 302 ntBASIC3.1□□□□□ -1.91
HOXD4P09016 AC091179.1-201ENST00000461606 579 ntBASIC3.1□□□□□ -1.91
HOXD4P09016 AC068724.1-201ENST00000487100 792 ntBASIC3.1□□□□□ -1.91
HOXD4P09016 AC114981.1-201ENST00000503897 678 ntBASIC3.1□□□□□ -1.91
HOXD4P09016 RNA5SP385-201ENST00000515947 110 ntBASIC3.1□□□□□ -1.91
HOXD4P09016 RNU1-103P-201ENST00000516502 125 ntBASIC3.1□□□□□ -1.91
HOXD4P09016 ELOC-204ENST00000519487 814 ntAPPRIS P1 TSL 2 BASIC3.1□□□□□ -1.91
HOXD4P09016 AC090796.1-201ENST00000520370 567 ntTSL 4 BASIC3.1□□□□□ -1.91
HOXD4P09016 AC103726.1-201ENST00000520785 474 ntTSL 2 BASIC3.1□□□□□ -1.91
HOXD4P09016 AP004371.1-201ENST00000525240 214 ntBASIC3.1□□□□□ -1.91
HOXD4P09016 AC108471.2-204ENST00000526807 784 ntTSL 5 BASIC3.1□□□□□ -1.91
HOXD4P09016 AC007115.1-201ENST00000546853 234 ntBASIC3.1□□□□□ -1.91
HOXD4P09016 AC004024.1-201ENST00000549244 247 ntBASIC3.1□□□□□ -1.91
HOXD4P09016 AC093012.1-201ENST00000552999 446 ntTSL 3 BASIC3.1□□□□□ -1.91
HOXD4P09016 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC3.1□□□□□ -1.91
HOXD4P09016 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC3.1□□□□□ -1.91
HOXD4P09016 AC136618.2-201ENST00000575091 400 ntBASIC3.1□□□□□ -1.91
HOXD4P09016 MIR4298-201ENST00000584380 73 ntBASIC3.1□□□□□ -1.91
HOXD4P09016 AC146944.4-201ENST00000602697 718 ntBASIC3.1□□□□□ -1.91
HOXD4P09016 AC092354.1-201ENST00000606057 376 ntBASIC3.1□□□□□ -1.91
HOXD4P09016 RNU6-88P-201ENST00000606801 100 ntBASIC3.1□□□□□ -1.91
HOXD4P09016 AL031775.1-201ENST00000607014 887 ntBASIC3.1□□□□□ -1.91
HOXD4P09016 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC3.1□□□□□ -1.91
HOXD4P09016 AC011939.3-201ENST00000613686 466 ntBASIC3.1□□□□□ -1.91
HOXD4P09016 AC092140.2-201ENST00000618027 521 ntBASIC3.1□□□□□ -1.91
HOXD4P09016 U4.6-201ENST00000621618 127 ntBASIC3.1□□□□□ -1.91
HOXD4P09016 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC3.1□□□□□ -1.91
HOXD4P09016 CEP44-201ENST00000296519 4173 ntAPPRIS P1 TSL 1 (best) BASIC3.1□□□□□ -1.91
HOXD4P09016 AC107029.2-201ENST00000462011 2305 ntTSL 2 BASIC3.1□□□□□ -1.91
HOXD4P09016 AL390237.1-201ENST00000404226 1415 ntBASIC3.1□□□□□ -1.91
HOXD4P09016 EVI5-208ENST00000540033 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC3.09□□□□□ -1.91
HOXD4P09016 CR383658.2-201ENST00000547576 1525 ntBASIC3.09□□□□□ -1.91
HOXD4P09016 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
HOXD4P09016 GNG5P1-201ENST00000255500 204 ntBASIC3.09□□□□□ -1.91
HOXD4P09016 FRG1CP-201ENST00000358464 769 ntBASIC3.09□□□□□ -1.91
HOXD4P09016 RNU6-462P-201ENST00000362659 105 ntBASIC3.09□□□□□ -1.91
HOXD4P09016 RNU4-24P-201ENST00000364565 139 ntBASIC3.09□□□□□ -1.91
HOXD4P09016 Y_RNA.493-201ENST00000384422 102 ntBASIC3.09□□□□□ -1.91
HOXD4P09016 SNORA48.5-201ENST00000391143 135 ntBASIC3.09□□□□□ -1.91
HOXD4P09016 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC3.09□□□□□ -1.91
HOXD4P09016 AL024474.1-201ENST00000404655 591 ntBASIC3.09□□□□□ -1.91
HOXD4P09016 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC3.09□□□□□ -1.91
HOXD4P09016 DBIP2-201ENST00000419076 262 ntBASIC3.09□□□□□ -1.91
HOXD4P09016 AC245291.1-201ENST00000419501 328 ntBASIC3.09□□□□□ -1.91
HOXD4P09016 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC3.09□□□□□ -1.91
HOXD4P09016 AC006548.1-201ENST00000427470 102 ntBASIC3.09□□□□□ -1.91
HOXD4P09016 AL512649.1-201ENST00000428997 581 ntBASIC3.09□□□□□ -1.91
HOXD4P09016 AL589823.1-201ENST00000429577 183 ntBASIC3.09□□□□□ -1.91
HOXD4P09016 ZRANB2-AS2-204ENST00000430605 213 ntTSL 2 BASIC3.09□□□□□ -1.91
HOXD4P09016 AL353705.1-201ENST00000433468 480 ntBASIC3.09□□□□□ -1.91
HOXD4P09016 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC3.09□□□□□ -1.91
HOXD4P09016 MTCO2P7-201ENST00000446518 666 ntBASIC3.09□□□□□ -1.91
HOXD4P09016 EPS15P1-201ENST00000448836 336 ntBASIC3.09□□□□□ -1.91
HOXD4P09016 RPL36AP33-201ENST00000450395 310 ntBASIC3.09□□□□□ -1.91
HOXD4P09016 AL589935.1-212ENST00000450998 525 ntTSL 2 BASIC3.09□□□□□ -1.91
HOXD4P09016 AL080313.2-201ENST00000456440 489 ntTSL 3 BASIC3.09□□□□□ -1.91
HOXD4P09016 AC112229.2-201ENST00000456683 476 ntTSL 5 BASIC3.09□□□□□ -1.91
HOXD4P09016 RNU7-136P-201ENST00000458819 69 ntBASIC3.09□□□□□ -1.91
HOXD4P09016 RC3H2-207ENST00000471874 749 ntTSL 1 (best) BASIC3.09□□□□□ -1.91
HOXD4P09016 AC020893.1-201ENST00000502452 580 ntBASIC3.09□□□□□ -1.91
HOXD4P09016 MTCO3P44-201ENST00000510977 541 ntBASIC3.09□□□□□ -1.91
HOXD4P09016 Y_RNA.695-201ENST00000516715 107 ntBASIC3.09□□□□□ -1.91
HOXD4P09016 RNU4ATAC10P-201ENST00000516967 122 ntBASIC3.09□□□□□ -1.91
HOXD4P09016 AC104316.1-201ENST00000521258 625 ntTSL 3 BASIC3.09□□□□□ -1.91
HOXD4P09016 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC3.09□□□□□ -1.91
HOXD4P09016 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC3.09□□□□□ -1.91
HOXD4P09016 AC008083.3-201ENST00000547777 329 ntTSL 3 BASIC3.09□□□□□ -1.91
HOXD4P09016 AL133279.1-201ENST00000553487 473 ntTSL 3 BASIC3.09□□□□□ -1.91
HOXD4P09016 AL157955.1-201ENST00000554433 331 ntTSL 3 BASIC3.09□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 102.9 ms