Protein–RNA interactions for Protein: Q9UHB6

LIMA1, LIM domain and actin-binding protein 1, humanhuman

Known RBP Predictions only

Length 759 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1Q9UHB6 AC002465.1-201ENST00000436097 349 ntTSL 2 BASIC3.71□□□□□ -1.82
LIMA1Q9UHB6 AC097347.1-201ENST00000438499 517 ntTSL 3 BASIC3.71□□□□□ -1.82
LIMA1Q9UHB6 TXNP1-201ENST00000441872 371 ntBASIC3.71□□□□□ -1.82
LIMA1Q9UHB6 AL662791.1-201ENST00000441992 928 ntBASIC3.71□□□□□ -1.82
LIMA1Q9UHB6 AL136097.1-201ENST00000456945 913 ntBASIC3.71□□□□□ -1.82
LIMA1Q9UHB6 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC3.71□□□□□ -1.82
LIMA1Q9UHB6 AC108860.1-201ENST00000484521 383 ntBASIC3.71□□□□□ -1.82
LIMA1Q9UHB6 LINC02447-203ENST00000504402 292 ntTSL 3 BASIC3.71□□□□□ -1.82
LIMA1Q9UHB6 DSTNP2-201ENST00000504533 515 ntBASIC3.71□□□□□ -1.82
LIMA1Q9UHB6 PRR16-204ENST00000505123 1298 ntTSL 3 BASIC3.71□□□□□ -1.82
LIMA1Q9UHB6 HMGN1P11-201ENST00000508668 303 ntBASIC3.71□□□□□ -1.82
LIMA1Q9UHB6 Y_RNA.688-201ENST00000516565 95 ntBASIC3.71□□□□□ -1.82
LIMA1Q9UHB6 SNORA64.4-201ENST00000516632 81 ntBASIC3.71□□□□□ -1.82
LIMA1Q9UHB6 RNU6-798P-201ENST00000516912 103 ntBASIC3.71□□□□□ -1.82
LIMA1Q9UHB6 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC3.71□□□□□ -1.82
LIMA1Q9UHB6 AP001205.1-201ENST00000521625 449 ntTSL 3 BASIC3.71□□□□□ -1.82
LIMA1Q9UHB6 AC005225.1-201ENST00000553394 937 ntTSL 3 BASIC3.71□□□□□ -1.82
LIMA1Q9UHB6 ZNF192P1-203ENST00000565888 810 ntBASIC3.71□□□□□ -1.82
LIMA1Q9UHB6 AL031775.1-201ENST00000607014 887 ntBASIC3.71□□□□□ -1.82
LIMA1Q9UHB6 AC090425.2-201ENST00000608818 501 ntBASIC3.71□□□□□ -1.82
LIMA1Q9UHB6 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC3.71□□□□□ -1.82
LIMA1Q9UHB6 AC243312.2-201ENST00000623340 601 ntBASIC3.71□□□□□ -1.82
LIMA1Q9UHB6 AC004777.1-201ENST00000624317 287 ntBASIC3.71□□□□□ -1.82
LIMA1Q9UHB6 AC068724.3-201ENST00000625906 87 ntBASIC3.71□□□□□ -1.82
LIMA1Q9UHB6 SLC30A6-203ENST00000379343 2354 ntTSL 1 (best) BASIC3.71□□□□□ -1.82
LIMA1Q9UHB6 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.7□□□□□ -1.82
LIMA1Q9UHB6 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
LIMA1Q9UHB6 SNORA73.2-201ENST00000364946 201 ntBASIC3.7□□□□□ -1.82
LIMA1Q9UHB6 MAGI2-AS2-201ENST00000411616 476 ntTSL 2 BASIC3.7□□□□□ -1.82
LIMA1Q9UHB6 REV3L-IT1-201ENST00000411895 382 ntTSL 5 BASIC3.7□□□□□ -1.82
LIMA1Q9UHB6 MTND1P21-201ENST00000412991 285 ntBASIC3.7□□□□□ -1.82
LIMA1Q9UHB6 NPM1P11-201ENST00000417106 855 ntBASIC3.7□□□□□ -1.82
LIMA1Q9UHB6 AC245291.1-201ENST00000419501 328 ntBASIC3.7□□□□□ -1.82
LIMA1Q9UHB6 ATP5JP1-201ENST00000431631 322 ntBASIC3.7□□□□□ -1.82
LIMA1Q9UHB6 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
LIMA1Q9UHB6 TPT1P14-201ENST00000448018 505 ntBASIC3.7□□□□□ -1.82
LIMA1Q9UHB6 AL392046.1-203ENST00000450106 651 ntTSL 2 BASIC3.7□□□□□ -1.82
LIMA1Q9UHB6 AC073387.1-201ENST00000453261 709 ntBASIC3.7□□□□□ -1.82
LIMA1Q9UHB6 LINC00894-208ENST00000455777 284 ntTSL 2 BASIC3.7□□□□□ -1.82
LIMA1Q9UHB6 AL122001.1-201ENST00000457027 370 ntBASIC3.7□□□□□ -1.82
LIMA1Q9UHB6 ASH1L-IT1-201ENST00000458371 448 ntTSL 5 BASIC3.7□□□□□ -1.82
LIMA1Q9UHB6 GPX5-203ENST00000469384 428 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
LIMA1Q9UHB6 TIPARP-AS1-202ENST00000478005 554 ntTSL 4 BASIC3.7□□□□□ -1.82
LIMA1Q9UHB6 AC068587.1-201ENST00000483613 781 ntBASIC3.7□□□□□ -1.82
LIMA1Q9UHB6 VN1R104P-201ENST00000505115 1009 ntBASIC3.7□□□□□ -1.82
LIMA1Q9UHB6 CSN1S1-202ENST00000505782 871 ntAPPRIS ALT2 TSL 5 BASIC3.7□□□□□ -1.82
LIMA1Q9UHB6 CSN1S1-204ENST00000507772 895 ntAPPRIS ALT2 TSL 5 BASIC3.7□□□□□ -1.82
LIMA1Q9UHB6 AC097467.3-213ENST00000508191 726 ntTSL 3 BASIC3.7□□□□□ -1.82
LIMA1Q9UHB6 SCARNA20.6-201ENST00000517251 106 ntBASIC3.7□□□□□ -1.82
LIMA1Q9UHB6 AC025881.1-201ENST00000518851 512 ntBASIC3.7□□□□□ -1.82
LIMA1Q9UHB6 MTND4LP18-201ENST00000526864 291 ntBASIC3.7□□□□□ -1.82
LIMA1Q9UHB6 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC3.7□□□□□ -1.82
LIMA1Q9UHB6 AC022509.2-201ENST00000540392 699 ntTSL 3 BASIC3.7□□□□□ -1.82
LIMA1Q9UHB6 LINC01405-202ENST00000547607 674 ntTSL 3 BASIC3.7□□□□□ -1.82
LIMA1Q9UHB6 AC013417.1-201ENST00000549896 271 ntTSL 5 BASIC3.7□□□□□ -1.82
LIMA1Q9UHB6 AC005476.1-201ENST00000554427 397 ntBASIC3.7□□□□□ -1.82
LIMA1Q9UHB6 AC003973.1-201ENST00000600071 546 ntTSL 4 BASIC3.7□□□□□ -1.82
LIMA1Q9UHB6 BDH2P1-201ENST00000602288 736 ntBASIC3.7□□□□□ -1.82
LIMA1Q9UHB6 AC012360.2-201ENST00000609349 391 ntBASIC3.7□□□□□ -1.82
LIMA1Q9UHB6 AC012150.2-201ENST00000621300 544 ntBASIC3.7□□□□□ -1.82
LIMA1Q9UHB6 AC092628.2-201ENST00000622492 339 ntBASIC3.7□□□□□ -1.82
LIMA1Q9UHB6 AGTR1-208ENST00000475347 1669 ntAPPRIS P1 TSL 3 BASIC3.7□□□□□ -1.82
LIMA1Q9UHB6 MACF1-201ENST00000289893 19141 ntTSL 5 BASIC3.7□□□□□ -1.82
LIMA1Q9UHB6 P2RY12-201ENST00000302632 1766 ntAPPRIS P1 TSL 1 (best) BASIC3.7□□□□□ -1.82
LIMA1Q9UHB6 AL672296.1-201ENST00000427780 2158 ntBASIC3.7□□□□□ -1.82
LIMA1Q9UHB6 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC3.7□□□□□ -1.82
LIMA1Q9UHB6 PARP15-206ENST00000493645 1311 ntTSL 1 (best) BASIC3.7□□□□□ -1.82
LIMA1Q9UHB6 MACC1-205ENST00000589011 2686 ntAPPRIS P1 TSL 5 BASIC3.69□□□□□ -1.82
LIMA1Q9UHB6 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
LIMA1Q9UHB6 CCDC168-201ENST00000322527 21466 ntAPPRIS P1 TSL 3 BASIC3.69□□□□□ -1.82
LIMA1Q9UHB6 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC3.69□□□□□ -1.82
LIMA1Q9UHB6 SCOC-203ENST00000394203 1999 ntTSL 2 BASIC3.69□□□□□ -1.82
LIMA1Q9UHB6 C6orf10-203ENST00000442822 1696 ntAPPRIS ALT2 TSL 1 (best) BASIC3.69□□□□□ -1.82
LIMA1Q9UHB6 RNA5SP383-201ENST00000362934 120 ntBASIC3.69□□□□□ -1.82
LIMA1Q9UHB6 RNA5SP197-201ENST00000363357 119 ntBASIC3.69□□□□□ -1.82
LIMA1Q9UHB6 SNORD56.3-201ENST00000363507 71 ntBASIC3.69□□□□□ -1.82
LIMA1Q9UHB6 RN7SKP280-201ENST00000364196 304 ntBASIC3.69□□□□□ -1.82
LIMA1Q9UHB6 SNORA26.8-201ENST00000391306 124 ntBASIC3.69□□□□□ -1.82
LIMA1Q9UHB6 RPL21P17-201ENST00000397467 475 ntBASIC3.69□□□□□ -1.82
LIMA1Q9UHB6 RNU6-516P-201ENST00000411381 104 ntBASIC3.69□□□□□ -1.82
LIMA1Q9UHB6 LINC00397-201ENST00000422074 344 ntTSL 3 BASIC3.69□□□□□ -1.82
LIMA1Q9UHB6 AC118469.1-201ENST00000442943 488 ntBASIC3.69□□□□□ -1.82
LIMA1Q9UHB6 MIR217HG-201ENST00000446139 900 ntTSL 5 BASIC3.69□□□□□ -1.82
LIMA1Q9UHB6 AC125238.1-201ENST00000448842 249 ntBASIC3.69□□□□□ -1.82
LIMA1Q9UHB6 AL020994.3-201ENST00000449126 274 ntTSL 3 BASIC3.69□□□□□ -1.82
LIMA1Q9UHB6 RBMY2UP-201ENST00000453474 324 ntBASIC3.69□□□□□ -1.82
LIMA1Q9UHB6 LINC00374-201ENST00000454780 800 ntTSL 3 BASIC3.69□□□□□ -1.82
LIMA1Q9UHB6 AP000797.1-201ENST00000478870 387 ntBASIC3.69□□□□□ -1.82
LIMA1Q9UHB6 AL049830.2-201ENST00000480072 201 ntBASIC3.69□□□□□ -1.82
LIMA1Q9UHB6 AC008572.1-201ENST00000507269 442 ntTSL 5 BASIC3.69□□□□□ -1.82
LIMA1Q9UHB6 AC024587.2-201ENST00000509458 805 ntTSL 3 BASIC3.69□□□□□ -1.82
LIMA1Q9UHB6 AC105914.1-201ENST00000511798 226 ntBASIC3.69□□□□□ -1.82
LIMA1Q9UHB6 RN7SKP18-201ENST00000516005 275 ntBASIC3.69□□□□□ -1.82
LIMA1Q9UHB6 RNU1-143P-201ENST00000516296 146 ntBASIC3.69□□□□□ -1.82
LIMA1Q9UHB6 AL133271.1-201ENST00000538229 291 ntBASIC3.69□□□□□ -1.82
LIMA1Q9UHB6 SYF2P1-201ENST00000550658 413 ntBASIC3.69□□□□□ -1.82
LIMA1Q9UHB6 AF099810.1-201ENST00000554219 525 ntTSL 3 BASIC3.69□□□□□ -1.82
LIMA1Q9UHB6 OR4T1P-201ENST00000554933 911 ntBASIC3.69□□□□□ -1.82
LIMA1Q9UHB6 AC007342.4-202ENST00000565189 721 ntTSL 3 BASIC3.69□□□□□ -1.82
LIMA1Q9UHB6 AC069114.1-201ENST00000580927 287 ntTSL 2 BASIC3.69□□□□□ -1.82
Retrieved 100 of 98,524 protein–RNA pairs in 84.3 ms