Protein–RNA interactions for Protein: Q9NWM3

CUEDC1, CUE domain-containing protein 1, humanhuman

Predicted RBP Predictions only

Length 386 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUEDC1Q9NWM3 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC5.59□□□□□ -1.51
CUEDC1Q9NWM3 AC010761.5-201ENST00000579468 287 ntTSL 3 BASIC5.59□□□□□ -1.51
CUEDC1Q9NWM3 SSX4B-201ENST00000595235 1221 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
CUEDC1Q9NWM3 SSX4-201ENST00000595689 1221 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
CUEDC1Q9NWM3 AL161637.1-201ENST00000622380 412 ntBASIC5.59□□□□□ -1.51
CUEDC1Q9NWM3 AL691477.1-201ENST00000624398 162 ntBASIC5.59□□□□□ -1.51
CUEDC1Q9NWM3 PIGX-210ENST00000639143 831 ntAPPRIS ALT2 TSL 2 BASIC5.59□□□□□ -1.51
CUEDC1Q9NWM3 HSPA8P1-201ENST00000425843 1833 ntBASIC5.59□□□□□ -1.51
CUEDC1Q9NWM3 CEP85L-201ENST00000360290 1736 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
CUEDC1Q9NWM3 DDX3Y-201ENST00000336079 4445 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.52
CUEDC1Q9NWM3 RACGAP1-202ENST00000427314 3229 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.52
CUEDC1Q9NWM3 FAM229B-201ENST00000368656 2543 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
CUEDC1Q9NWM3 STARD9-201ENST00000290607 15567 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
CUEDC1Q9NWM3 MOB1B-201ENST00000309395 6963 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
CUEDC1Q9NWM3 TDRD3-204ENST00000377894 2484 ntTSL 2 BASIC5.58□□□□□ -1.52
CUEDC1Q9NWM3 FLJ46284-201ENST00000504861 3421 ntTSL 2 BASIC5.58□□□□□ -1.52
CUEDC1Q9NWM3 CBX5-201ENST00000209875 11528 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
CUEDC1Q9NWM3 POT1-AS1-205ENST00000453342 3252 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
CUEDC1Q9NWM3 TTC39C-201ENST00000304621 2304 ntAPPRIS P3 TSL 1 (best) BASIC5.58□□□□□ -1.52
CUEDC1Q9NWM3 NRDE2-201ENST00000354366 14208 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
CUEDC1Q9NWM3 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
CUEDC1Q9NWM3 AL603840.1-201ENST00000422374 4063 ntTSL 2 BASIC5.58□□□□□ -1.52
CUEDC1Q9NWM3 AC020656.2-201ENST00000613291 5309 ntBASIC5.58□□□□□ -1.52
CUEDC1Q9NWM3 SPINK5-201ENST00000256084 3535 ntAPPRIS P3 TSL 1 (best) BASIC5.58□□□□□ -1.52
CUEDC1Q9NWM3 ESRRG-206ENST00000366938 5274 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
CUEDC1Q9NWM3 ZCCHC7-202ENST00000336755 2619 ntAPPRIS P1 TSL 2 BASIC5.58□□□□□ -1.52
CUEDC1Q9NWM3 RNU6-1078P-201ENST00000364522 103 ntBASIC5.58□□□□□ -1.52
CUEDC1Q9NWM3 RN7SKP17-201ENST00000411242 351 ntBASIC5.58□□□□□ -1.52
CUEDC1Q9NWM3 TSSK4-203ENST00000428351 576 ntTSL 2 BASIC5.58□□□□□ -1.52
CUEDC1Q9NWM3 MACROD2-IT1-201ENST00000448536 665 ntTSL 5 BASIC5.58□□□□□ -1.52
CUEDC1Q9NWM3 AP001439.1-201ENST00000455275 392 ntTSL 2 BASIC5.58□□□□□ -1.52
CUEDC1Q9NWM3 RNU1-88P-201ENST00000459274 128 ntBASIC5.58□□□□□ -1.52
CUEDC1Q9NWM3 AP000797.2-201ENST00000475768 606 ntBASIC5.58□□□□□ -1.52
CUEDC1Q9NWM3 RNU6-479P-201ENST00000516348 105 ntBASIC5.58□□□□□ -1.52
CUEDC1Q9NWM3 Y_RNA.713-201ENST00000517013 96 ntBASIC5.58□□□□□ -1.52
CUEDC1Q9NWM3 AL035078.3-201ENST00000525382 241 ntTSL 3 BASIC5.58□□□□□ -1.52
CUEDC1Q9NWM3 AC091544.7-201ENST00000554000 240 ntTSL 3 BASIC5.58□□□□□ -1.52
CUEDC1Q9NWM3 AC004584.2-201ENST00000570407 410 ntBASIC5.58□□□□□ -1.52
CUEDC1Q9NWM3 MIR4273-201ENST00000582824 84 ntBASIC5.58□□□□□ -1.52
CUEDC1Q9NWM3 AC022916.4-201ENST00000585646 475 ntTSL 3 BASIC5.58□□□□□ -1.52
CUEDC1Q9NWM3 ELOCP5-201ENST00000604924 333 ntBASIC5.58□□□□□ -1.52
CUEDC1Q9NWM3 PCBP1-AS1-307ENST00000627050 912 ntTSL 5 BASIC5.58□□□□□ -1.52
CUEDC1Q9NWM3 AC026951.1-201ENST00000559530 2459 ntBASIC5.58□□□□□ -1.52
CUEDC1Q9NWM3 UBE2W-207ENST00000602593 2201 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
CUEDC1Q9NWM3 ABI2-204ENST00000295851 22209 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
CUEDC1Q9NWM3 KMT2D-201ENST00000301067 19419 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
CUEDC1Q9NWM3 LRRK2-201ENST00000298910 9158 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
CUEDC1Q9NWM3 PTBP3-207ENST00000458258 7995 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
CUEDC1Q9NWM3 C1orf27-201ENST00000287859 3792 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
CUEDC1Q9NWM3 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC5.57□□□□□ -1.52
CUEDC1Q9NWM3 STAU2-220ENST00000522695 2646 ntAPPRIS ALT1 TSL 1 (best) BASIC5.57□□□□□ -1.52
CUEDC1Q9NWM3 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
CUEDC1Q9NWM3 snoU2_19.2-201ENST00000363024 80 ntBASIC5.57□□□□□ -1.52
CUEDC1Q9NWM3 Y_RNA.480-201ENST00000384364 102 ntBASIC5.57□□□□□ -1.52
CUEDC1Q9NWM3 MIR215-201ENST00000384858 110 ntBASIC5.57□□□□□ -1.52
CUEDC1Q9NWM3 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
CUEDC1Q9NWM3 HIST1H3PS1-201ENST00000404612 417 ntBASIC5.57□□□□□ -1.52
CUEDC1Q9NWM3 AL080315.1-201ENST00000406055 466 ntBASIC5.57□□□□□ -1.52
CUEDC1Q9NWM3 SPTLC1P2-201ENST00000407089 121 ntBASIC5.57□□□□□ -1.52
CUEDC1Q9NWM3 RNA5SP111-201ENST00000411386 101 ntBASIC5.57□□□□□ -1.52
CUEDC1Q9NWM3 AL354766.1-201ENST00000423396 542 ntBASIC5.57□□□□□ -1.52
CUEDC1Q9NWM3 RPL23AP25-201ENST00000430973 463 ntBASIC5.57□□□□□ -1.52
CUEDC1Q9NWM3 AC004866.2-201ENST00000438285 481 ntBASIC5.57□□□□□ -1.52
CUEDC1Q9NWM3 RPS17P13-201ENST00000448974 407 ntBASIC5.57□□□□□ -1.52
CUEDC1Q9NWM3 FRG2FP-204ENST00000453982 852 ntBASIC5.57□□□□□ -1.52
CUEDC1Q9NWM3 snoU109.4-201ENST00000458953 143 ntBASIC5.57□□□□□ -1.52
CUEDC1Q9NWM3 AC018437.1-201ENST00000492214 406 ntBASIC5.57□□□□□ -1.52
CUEDC1Q9NWM3 SERF1AP1-201ENST00000514575 187 ntBASIC5.57□□□□□ -1.52
CUEDC1Q9NWM3 AC091435.2-201ENST00000514586 565 ntTSL 4 BASIC5.57□□□□□ -1.52
CUEDC1Q9NWM3 RNU6-861P-201ENST00000516745 106 ntBASIC5.57□□□□□ -1.52
CUEDC1Q9NWM3 RNU4-60P-201ENST00000517239 135 ntBASIC5.57□□□□□ -1.52
CUEDC1Q9NWM3 AC090151.1-201ENST00000520784 730 ntBASIC5.57□□□□□ -1.52
CUEDC1Q9NWM3 MYL6-213ENST00000549017 502 ntTSL 3 BASIC5.57□□□□□ -1.52
CUEDC1Q9NWM3 AC044860.2-201ENST00000561005 179 ntBASIC5.57□□□□□ -1.52
CUEDC1Q9NWM3 AL390726.5-202ENST00000564800 256 ntBASIC5.57□□□□□ -1.52
CUEDC1Q9NWM3 AC142086.4-201ENST00000568904 650 ntTSL 3 BASIC5.57□□□□□ -1.52
CUEDC1Q9NWM3 AC006115.2-201ENST00000596823 202 ntBASIC5.57□□□□□ -1.52
CUEDC1Q9NWM3 AC072026.1-201ENST00000605023 201 ntBASIC5.57□□□□□ -1.52
CUEDC1Q9NWM3 AC008962.1-201ENST00000605729 304 ntBASIC5.57□□□□□ -1.52
CUEDC1Q9NWM3 NADK2-211ENST00000617628 744 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
CUEDC1Q9NWM3 AC006065.5-201ENST00000623427 349 ntBASIC5.57□□□□□ -1.52
CUEDC1Q9NWM3 AP4S1-212ENST00000622409 4113 ntAPPRIS P1 TSL 3 BASIC5.57□□□□□ -1.52
CUEDC1Q9NWM3 KCNT2-203ENST00000451324 3146 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
CUEDC1Q9NWM3 NFAT5-212ENST00000627621 5875 ntAPPRIS ALT1 TSL 2 BASIC5.57□□□□□ -1.52
CUEDC1Q9NWM3 ARHGAP20-206ENST00000533353 6066 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
CUEDC1Q9NWM3 PREPL-216ENST00000541738 6049 ntTSL 2 BASIC5.57□□□□□ -1.52
CUEDC1Q9NWM3 RYR3-212ENST00000634891 15591 ntAPPRIS P3 TSL 1 (best) BASIC5.57□□□□□ -1.52
CUEDC1Q9NWM3 KLHL28-202ENST00000396128 6545 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
CUEDC1Q9NWM3 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
CUEDC1Q9NWM3 FAR2-203ENST00000547116 1787 ntTSL 2 BASIC5.57□□□□□ -1.52
CUEDC1Q9NWM3 ZNF285B-201ENST00000561698 1767 ntBASIC5.57□□□□□ -1.52
CUEDC1Q9NWM3 ADGRL3-218ENST00000514996 4731 ntAPPRIS ALT2 TSL 5 BASIC5.57□□□□□ -1.52
CUEDC1Q9NWM3 SGO1-AS1-203ENST00000455626 2041 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
CUEDC1Q9NWM3 C5-201ENST00000223642 5465 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
CUEDC1Q9NWM3 ZNF850-202ENST00000591344 7714 ntAPPRIS P3 TSL 1 (best) BASIC5.57□□□□□ -1.52
CUEDC1Q9NWM3 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
CUEDC1Q9NWM3 AL022311.1-201ENST00000623726 19416 ntBASIC5.56□□□□□ -1.52
CUEDC1Q9NWM3 TBCK-205ENST00000432496 3362 ntAPPRIS P1 TSL 2 BASIC5.56□□□□□ -1.52
CUEDC1Q9NWM3 CLSPN-202ENST00000318121 4169 ntAPPRIS P3 TSL 1 (best) BASIC5.56□□□□□ -1.52
CUEDC1Q9NWM3 TGIF1-208ENST00000472042 2214 ntTSL 2 BASIC5.56□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 96.9 ms