Protein–RNA interactions for Protein: Q3LFD5

USP41, Putative ubiquitin carboxyl-terminal hydrolase 41, humanhuman

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP41Q3LFD5 EI24P1-201ENST00000416584 867 ntBASIC3.74□□□□□ -1.81
USP41Q3LFD5 TRAPPC13-204ENST00000438419 1437 ntAPPRIS P4 TSL 1 (best) BASIC3.74□□□□□ -1.81
USP41Q3LFD5 AP002512.3-201ENST00000440231 985 ntAPPRIS P1 BASIC3.74□□□□□ -1.81
USP41Q3LFD5 GACAT1-202ENST00000441383 540 ntTSL 4 BASIC3.74□□□□□ -1.81
USP41Q3LFD5 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC3.74□□□□□ -1.81
USP41Q3LFD5 FAM103A2P-201ENST00000444122 354 ntBASIC3.74□□□□□ -1.81
USP41Q3LFD5 GDI2P2-201ENST00000445131 608 ntBASIC3.74□□□□□ -1.81
USP41Q3LFD5 TAF9P1-201ENST00000445421 515 ntBASIC3.74□□□□□ -1.81
USP41Q3LFD5 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC3.74□□□□□ -1.81
USP41Q3LFD5 TAF9P2-201ENST00000454958 515 ntBASIC3.74□□□□□ -1.81
USP41Q3LFD5 AL136097.1-201ENST00000456945 913 ntBASIC3.74□□□□□ -1.81
USP41Q3LFD5 MTND4LP3-201ENST00000468320 276 ntBASIC3.74□□□□□ -1.81
USP41Q3LFD5 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC3.74□□□□□ -1.81
USP41Q3LFD5 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC3.74□□□□□ -1.81
USP41Q3LFD5 AC023141.12-201ENST00000512399 199 ntBASIC3.74□□□□□ -1.81
USP41Q3LFD5 AC109454.3-201ENST00000512748 669 ntTSL 3 BASIC3.74□□□□□ -1.81
USP41Q3LFD5 RN7SKP57-201ENST00000517248 293 ntBASIC3.74□□□□□ -1.81
USP41Q3LFD5 LRRTM2-203ENST00000521094 1182 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
USP41Q3LFD5 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC3.74□□□□□ -1.81
USP41Q3LFD5 AC239802.1-201ENST00000531288 406 ntTSL 5 BASIC3.74□□□□□ -1.81
USP41Q3LFD5 SAMD3-214ENST00000532763 3690 ntTSL 5 BASIC3.74□□□□□ -1.81
USP41Q3LFD5 AC018410.2-201ENST00000540410 610 ntTSL 5 BASIC3.74□□□□□ -1.81
USP41Q3LFD5 AP003781.1-201ENST00000543403 404 ntTSL 3 BASIC3.74□□□□□ -1.81
USP41Q3LFD5 AC021755.1-201ENST00000559747 1447 ntBASIC3.74□□□□□ -1.81
USP41Q3LFD5 AC091691.2-201ENST00000581940 567 ntTSL 4 BASIC3.74□□□□□ -1.81
USP41Q3LFD5 AC090371.2-202ENST00000582239 644 ntTSL 5 BASIC3.74□□□□□ -1.81
USP41Q3LFD5 AC083760.1-201ENST00000589621 670 ntBASIC3.74□□□□□ -1.81
USP41Q3LFD5 AC012065.4-201ENST00000602445 679 ntBASIC3.74□□□□□ -1.81
USP41Q3LFD5 AL031176.1-201ENST00000604554 466 ntBASIC3.74□□□□□ -1.81
USP41Q3LFD5 AC025048.6-202ENST00000627667 438 ntBASIC3.74□□□□□ -1.81
USP41Q3LFD5 SULT1B1-201ENST00000310613 7115 ntAPPRIS P1 TSL 1 (best) BASIC3.74□□□□□ -1.81
USP41Q3LFD5 XRCC4-203ENST00000396027 1530 ntAPPRIS ALT1 TSL 5 BASIC3.74□□□□□ -1.81
USP41Q3LFD5 RIOK3P1-201ENST00000418778 1528 ntBASIC3.74□□□□□ -1.81
USP41Q3LFD5 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.74□□□□□ -1.81
USP41Q3LFD5 MBNL1-223ENST00000498502 5258 ntTSL 5 BASIC3.74□□□□□ -1.81
USP41Q3LFD5 MUC19-205ENST00000454784 24775 ntTSL 5 BASIC3.74□□□□□ -1.81
USP41Q3LFD5 AC079160.1-202ENST00000508406 2795 ntTSL 5 BASIC3.74□□□□□ -1.81
USP41Q3LFD5 SYNE1-207ENST00000367255 27748 ntAPPRIS P4 TSL 1 (best) BASIC3.74□□□□□ -1.81
USP41Q3LFD5 AL157700.1-201ENST00000561973 1432 ntBASIC3.73□□□□□ -1.81
USP41Q3LFD5 Y_RNA.548-201ENST00000384656 105 ntBASIC3.73□□□□□ -1.81
USP41Q3LFD5 RNY3P10-201ENST00000384764 102 ntBASIC3.73□□□□□ -1.81
USP41Q3LFD5 AL391417.1-201ENST00000404100 426 ntBASIC3.73□□□□□ -1.81
USP41Q3LFD5 HSPE1P8-201ENST00000406997 288 ntBASIC3.73□□□□□ -1.81
USP41Q3LFD5 U3.39-201ENST00000408569 239 ntBASIC3.73□□□□□ -1.81
USP41Q3LFD5 PPP1R1C-203ENST00000409702 1157 ntAPPRIS P1 TSL 1 (best) BASIC3.73□□□□□ -1.81
USP41Q3LFD5 RN7SKP142-201ENST00000411236 328 ntBASIC3.73□□□□□ -1.81
USP41Q3LFD5 RN7SKP53-201ENST00000411337 315 ntBASIC3.73□□□□□ -1.81
USP41Q3LFD5 MYO16-AS2-201ENST00000412809 436 ntTSL 3 BASIC3.73□□□□□ -1.81
USP41Q3LFD5 RPL17P12-201ENST00000413391 526 ntBASIC3.73□□□□□ -1.81
USP41Q3LFD5 AC005300.1-201ENST00000428401 373 ntBASIC3.73□□□□□ -1.81
USP41Q3LFD5 AL360221.1-201ENST00000445989 335 ntBASIC3.73□□□□□ -1.81
USP41Q3LFD5 AL513422.1-201ENST00000449531 383 ntTSL 2 BASIC3.73□□□□□ -1.81
USP41Q3LFD5 Z82190.1-201ENST00000454534 490 ntBASIC3.73□□□□□ -1.81
USP41Q3LFD5 MTCO1P42-201ENST00000457379 726 ntBASIC3.73□□□□□ -1.81
USP41Q3LFD5 CHRM3-AS2-203ENST00000458325 895 ntTSL 2 BASIC3.73□□□□□ -1.81
USP41Q3LFD5 PDCD10-214ENST00000487947 716 ntTSL 5 BASIC3.73□□□□□ -1.81
USP41Q3LFD5 APOA2-210ENST00000491350 263 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
USP41Q3LFD5 NDUFB4P9-201ENST00000511646 388 ntBASIC3.73□□□□□ -1.81
USP41Q3LFD5 RPL12P22-201ENST00000519073 490 ntBASIC3.73□□□□□ -1.81
USP41Q3LFD5 MAL2-203ENST00000534619 578 ntTSL 4 BASIC3.73□□□□□ -1.81
USP41Q3LFD5 LINC02384-205ENST00000539404 785 ntTSL 3 BASIC3.73□□□□□ -1.81
USP41Q3LFD5 AC078962.4-201ENST00000546135 254 ntTSL 3 BASIC3.73□□□□□ -1.81
USP41Q3LFD5 CR383656.7-201ENST00000548164 174 ntBASIC3.73□□□□□ -1.81
USP41Q3LFD5 LINC00519-201ENST00000557518 682 ntTSL 2 BASIC3.73□□□□□ -1.81
USP41Q3LFD5 AC012414.6-201ENST00000568241 401 ntBASIC3.73□□□□□ -1.81
USP41Q3LFD5 AC025272.1-201ENST00000569661 483 ntTSL 2 BASIC3.73□□□□□ -1.81
USP41Q3LFD5 MIR4738-201ENST00000579134 87 ntBASIC3.73□□□□□ -1.81
USP41Q3LFD5 MIR4425-201ENST00000580572 84 ntBASIC3.73□□□□□ -1.81
USP41Q3LFD5 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC3.73□□□□□ -1.81
USP41Q3LFD5 KLKP1-201ENST00000595979 403 ntBASIC3.73□□□□□ -1.81
USP41Q3LFD5 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC3.73□□□□□ -1.81
USP41Q3LFD5 AC073544.2-201ENST00000601155 540 ntBASIC3.73□□□□□ -1.81
USP41Q3LFD5 XIAPP1-201ENST00000603162 600 ntBASIC3.73□□□□□ -1.81
USP41Q3LFD5 FBXW7-AS1-201ENST00000605147 372 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
USP41Q3LFD5 RNF219-AS1-205ENST00000605996 792 ntTSL 5 BASIC3.73□□□□□ -1.81
USP41Q3LFD5 AL356585.4-201ENST00000623078 1229 ntBASIC3.73□□□□□ -1.81
USP41Q3LFD5 DDX60L-207ENST00000505890 4568 ntTSL 2 BASIC3.73□□□□□ -1.81
USP41Q3LFD5 MTND4P4-201ENST00000439033 1366 ntBASIC3.73□□□□□ -1.81
USP41Q3LFD5 DOCK7-204ENST00000454575 6985 ntAPPRIS ALT2 TSL 1 (best) BASIC3.73□□□□□ -1.81
USP41Q3LFD5 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC3.73□□□□□ -1.81
USP41Q3LFD5 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC3.72□□□□□ -1.81
USP41Q3LFD5 SLC9C1-205ENST00000487372 3979 ntAPPRIS ALT2 TSL 1 (best) BASIC3.72□□□□□ -1.81
USP41Q3LFD5 ABCD2-201ENST00000308666 6238 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
USP41Q3LFD5 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC3.72□□□□□ -1.81
USP41Q3LFD5 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC3.72□□□□□ -1.81
USP41Q3LFD5 SETDB2-202ENST00000317257 5619 ntAPPRIS ALT2 TSL 1 (best) BASIC3.72□□□□□ -1.81
USP41Q3LFD5 LUM-201ENST00000266718 3008 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
USP41Q3LFD5 SYCP2-201ENST00000357552 5567 ntAPPRIS P2 TSL 1 (best) BASIC3.72□□□□□ -1.81
USP41Q3LFD5 P2RY12-201ENST00000302632 1766 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
USP41Q3LFD5 CCT4P2-201ENST00000233836 1548 ntBASIC3.72□□□□□ -1.81
USP41Q3LFD5 MTRNR2L10-201ENST00000545075 1530 ntAPPRIS P1 BASIC3.72□□□□□ -1.81
USP41Q3LFD5 SPA17-201ENST00000227135 853 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
USP41Q3LFD5 PMCH-201ENST00000329406 766 ntAPPRIS P1 TSL 1 (best) BASIC3.72□□□□□ -1.81
USP41Q3LFD5 Y_RNA.51-201ENST00000362725 102 ntBASIC3.72□□□□□ -1.81
USP41Q3LFD5 SNORA38.1-201ENST00000364172 131 ntBASIC3.72□□□□□ -1.81
USP41Q3LFD5 RN7SKP111-201ENST00000410349 271 ntBASIC3.72□□□□□ -1.81
USP41Q3LFD5 Z93403.1-201ENST00000411879 895 ntTSL 5 BASIC3.72□□□□□ -1.81
USP41Q3LFD5 BTF3L4P1-201ENST00000413813 468 ntBASIC3.72□□□□□ -1.81
USP41Q3LFD5 AL096799.1-201ENST00000425900 381 ntTSL 2 BASIC3.72□□□□□ -1.81
USP41Q3LFD5 AC017083.1-201ENST00000428093 483 ntBASIC3.72□□□□□ -1.81
Retrieved 100 of 98,524 protein–RNA pairs in 77.1 ms