Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 KLHL28-201ENST00000355081 2177 ntTSL 1 (best) BASIC4.75□□□□□ -1.65
RNF4P78317 NCOA3-201ENST00000371997 6750 ntAPPRIS ALT2 TSL 1 (best) BASIC4.75□□□□□ -1.65
RNF4P78317 LINC02302-201ENST00000556405 2904 ntTSL 2 BASIC4.75□□□□□ -1.65
RNF4P78317 DNAH14-208ENST00000430092 13763 ntAPPRIS P1 TSL 5 BASIC4.75□□□□□ -1.65
RNF4P78317 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC4.75□□□□□ -1.65
RNF4P78317 MTND5P30-201ENST00000452896 1731 ntBASIC4.75□□□□□ -1.65
RNF4P78317 KDM3B-209ENST00000542866 3634 ntTSL 2 BASIC4.74□□□□□ -1.65
RNF4P78317 SLC1A3-202ENST00000381918 3652 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
RNF4P78317 SRSF11-201ENST00000370949 3034 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
RNF4P78317 OR14L1P-202ENST00000641545 3009 ntBASIC4.74□□□□□ -1.65
RNF4P78317 BDNF-AS-202ENST00000499568 2039 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
RNF4P78317 AL158835.1-203ENST00000415305 3149 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
RNF4P78317 AL033384.1-202ENST00000431554 3104 ntTSL 1 (best) BASIC4.74□□□□□ -1.65
RNF4P78317 ZNF117-201ENST00000282869 9080 ntAPPRIS P1 TSL 1 (best) BASIC4.74□□□□□ -1.65
RNF4P78317 COMMD6-201ENST00000355801 486 ntTSL 2 BASIC4.74□□□□□ -1.65
RNF4P78317 RNU6-288P-201ENST00000363690 104 ntBASIC4.74□□□□□ -1.65
RNF4P78317 SNORA74A-201ENST00000364089 198 ntBASIC4.74□□□□□ -1.65
RNF4P78317 Y_RNA.404-201ENST00000383978 102 ntBASIC4.74□□□□□ -1.65
RNF4P78317 MRPL42P3-201ENST00000401492 326 ntBASIC4.74□□□□□ -1.65
RNF4P78317 AC073311.1-201ENST00000420146 505 ntTSL 5 BASIC4.74□□□□□ -1.65
RNF4P78317 STXBP5-AS1-204ENST00000431143 644 ntTSL 3 BASIC4.74□□□□□ -1.65
RNF4P78317 SNRPEP4-201ENST00000435815 279 ntBASIC4.74□□□□□ -1.65
RNF4P78317 AL590399.6-201ENST00000446396 307 ntBASIC4.74□□□□□ -1.65
RNF4P78317 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC4.74□□□□□ -1.65
RNF4P78317 RPS11P1-201ENST00000451072 473 ntBASIC4.74□□□□□ -1.65
RNF4P78317 RPL12P25-201ENST00000455592 494 ntBASIC4.74□□□□□ -1.65
RNF4P78317 TH2LCRR-203ENST00000457489 439 ntTSL 3 BASIC4.74□□□□□ -1.65
RNF4P78317 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC4.74□□□□□ -1.65
RNF4P78317 OARD1-209ENST00000471367 401 ntTSL 2 BASIC4.74□□□□□ -1.65
RNF4P78317 CREM-238ENST00000488741 651 ntTSL 2 BASIC4.74□□□□□ -1.65
RNF4P78317 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC4.74□□□□□ -1.65
RNF4P78317 AC025244.2-201ENST00000509215 422 ntTSL 3 BASIC4.74□□□□□ -1.65
RNF4P78317 SNORD116-26-201ENST00000516006 96 ntBASIC4.74□□□□□ -1.65
RNF4P78317 Y_RNA.670-201ENST00000516255 105 ntBASIC4.74□□□□□ -1.65
RNF4P78317 RN7SKP147-201ENST00000517154 244 ntBASIC4.74□□□□□ -1.65
RNF4P78317 SKP1-203ENST00000517625 876 ntAPPRIS P4 TSL 3 BASIC4.74□□□□□ -1.65
RNF4P78317 IL7-206ENST00000520269 456 ntTSL 3 BASIC4.74□□□□□ -1.65
RNF4P78317 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC4.74□□□□□ -1.65
RNF4P78317 AC027369.5-201ENST00000533838 755 ntBASIC4.74□□□□□ -1.65
RNF4P78317 AC010653.1-201ENST00000571108 881 ntBASIC4.74□□□□□ -1.65
RNF4P78317 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC4.74□□□□□ -1.65
RNF4P78317 AC007448.1-201ENST00000582714 234 ntBASIC4.74□□□□□ -1.65
RNF4P78317 AP005432.2-201ENST00000608162 586 ntBASIC4.74□□□□□ -1.65
RNF4P78317 AC093799.2-201ENST00000610062 578 ntBASIC4.74□□□□□ -1.65
RNF4P78317 AL359547.2-201ENST00000615810 418 ntBASIC4.74□□□□□ -1.65
RNF4P78317 LINC00901.1-201ENST00000617252 152 ntBASIC4.74□□□□□ -1.65
RNF4P78317 AC068870.2-201ENST00000620635 389 ntBASIC4.74□□□□□ -1.65
RNF4P78317 AC074029.4-201ENST00000624796 1859 ntBASIC4.74□□□□□ -1.65
RNF4P78317 PRUNE2-207ENST00000428286 12437 ntTSL 5 BASIC4.74□□□□□ -1.65
RNF4P78317 ZNF807-201ENST00000328088 1707 ntBASIC4.74□□□□□ -1.65
RNF4P78317 PNPT1P2-201ENST00000456768 2050 ntBASIC4.74□□□□□ -1.65
RNF4P78317 GRIK2-201ENST00000318991 4317 ntTSL 5 BASIC4.74□□□□□ -1.65
RNF4P78317 AL137003.2-201ENST00000606924 2538 ntBASIC4.74□□□□□ -1.65
RNF4P78317 GTDC1-202ENST00000344850 2607 ntAPPRIS P1 TSL 5 BASIC4.74□□□□□ -1.65
RNF4P78317 LINC01109-201ENST00000603837 3081 ntBASIC4.74□□□□□ -1.65
RNF4P78317 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC4.74□□□□□ -1.65
RNF4P78317 AC006148.1-201ENST00000484322 4310 ntTSL 1 (best) BASIC4.73□□□□□ -1.65
RNF4P78317 CENPI-202ENST00000372927 3262 ntAPPRIS P3 TSL 5 BASIC4.73□□□□□ -1.65
RNF4P78317 POF1B-201ENST00000262753 3941 ntAPPRIS P3 TSL 1 (best) BASIC4.73□□□□□ -1.65
RNF4P78317 ZNF28-203ENST00000438150 5171 ntTSL 2 BASIC4.73□□□□□ -1.65
RNF4P78317 CTAGE5-210ENST00000553728 4392 ntAPPRIS ALT2 TSL 5 BASIC4.73□□□□□ -1.65
RNF4P78317 MUC2-202ENST00000613187 4845 ntBASIC4.73□□□□□ -1.65
RNF4P78317 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC4.73□□□□□ -1.65
RNF4P78317 KERA-201ENST00000266719 2162 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
RNF4P78317 AP000808.1-201ENST00000512200 3252 ntTSL 2 BASIC4.73□□□□□ -1.65
RNF4P78317 FHIT-201ENST00000341848 174 ntTSL 3 BASIC4.73□□□□□ -1.65
RNF4P78317 SNORD3E-201ENST00000362899 217 ntBASIC4.73□□□□□ -1.65
RNF4P78317 Y_RNA.158-201ENST00000363651 101 ntBASIC4.73□□□□□ -1.65
RNF4P78317 LZIC-201ENST00000377213 945 ntAPPRIS P1 TSL 1 (best) BASIC4.73□□□□□ -1.65
RNF4P78317 RNU6-505P-201ENST00000384427 107 ntBASIC4.73□□□□□ -1.65
RNF4P78317 Y_RNA.527-201ENST00000384573 102 ntBASIC4.73□□□□□ -1.65
RNF4P78317 RNU6-306P-201ENST00000384617 107 ntBASIC4.73□□□□□ -1.65
RNF4P78317 AL583834.1-201ENST00000406943 343 ntBASIC4.73□□□□□ -1.65
RNF4P78317 RNU6-985P-201ENST00000410182 104 ntBASIC4.73□□□□□ -1.65
RNF4P78317 RNU2-43P-201ENST00000410306 190 ntBASIC4.73□□□□□ -1.65
RNF4P78317 Y_RNA.594-201ENST00000410373 140 ntBASIC4.73□□□□□ -1.65
RNF4P78317 RNU6-1050P-201ENST00000410388 107 ntBASIC4.73□□□□□ -1.65
RNF4P78317 ATG3P1-201ENST00000419507 911 ntBASIC4.73□□□□□ -1.65
RNF4P78317 AC018865.2-201ENST00000423631 129 ntBASIC4.73□□□□□ -1.65
RNF4P78317 AC090774.1-201ENST00000435925 246 ntBASIC4.73□□□□□ -1.65
RNF4P78317 RPL23AP33-201ENST00000442301 452 ntBASIC4.73□□□□□ -1.65
RNF4P78317 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC4.73□□□□□ -1.65
RNF4P78317 CYCSP24-201ENST00000445119 316 ntBASIC4.73□□□□□ -1.65
RNF4P78317 AC048351.1-202ENST00000449483 735 ntTSL 3 BASIC4.73□□□□□ -1.65
RNF4P78317 CEACAMP6-201ENST00000452007 574 ntBASIC4.73□□□□□ -1.65
RNF4P78317 RN7SL329P-201ENST00000467740 299 ntBASIC4.73□□□□□ -1.65
RNF4P78317 GSTM1-206ENST00000483399 512 ntTSL 3 BASIC4.73□□□□□ -1.65
RNF4P78317 AC026782.1-201ENST00000512952 449 ntBASIC4.73□□□□□ -1.65
RNF4P78317 RNU6ATAC24P-201ENST00000516811 135 ntBASIC4.73□□□□□ -1.65
RNF4P78317 RNU6-677P-201ENST00000516914 101 ntBASIC4.73□□□□□ -1.65
RNF4P78317 Y_RNA.708-201ENST00000516950 96 ntBASIC4.73□□□□□ -1.65
RNF4P78317 RN7SKP60-201ENST00000516985 239 ntBASIC4.73□□□□□ -1.65
RNF4P78317 RNU1-54P-201ENST00000517181 120 ntBASIC4.73□□□□□ -1.65
RNF4P78317 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC4.73□□□□□ -1.65
RNF4P78317 LINC02277-201ENST00000553386 453 ntTSL 2 BASIC4.73□□□□□ -1.65
RNF4P78317 LINC00871-201ENST00000555246 408 ntTSL 5 BASIC4.73□□□□□ -1.65
RNF4P78317 AC022884.2-201ENST00000578535 580 ntBASIC4.73□□□□□ -1.65
RNF4P78317 MIR3149-201ENST00000584629 83 ntBASIC4.73□□□□□ -1.65
RNF4P78317 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC4.73□□□□□ -1.65
RNF4P78317 DLEU2_5.1-201ENST00000615567 84 ntBASIC4.73□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 152 ms