Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 AC095057.2-201ENST00000515422 553 ntTSL 4 BASIC2.88□□□□□ -1.95
SDC1P18827 GLIPR1L1-204ENST00000548623 484 ntTSL 3 BASIC2.88□□□□□ -1.95
SDC1P18827 AC090503.2-201ENST00000551135 981 ntTSL 3 BASIC2.88□□□□□ -1.95
SDC1P18827 MED28P6-201ENST00000558776 231 ntBASIC2.88□□□□□ -1.95
SDC1P18827 AC055876.1-202ENST00000567053 138 ntBASIC2.88□□□□□ -1.95
SDC1P18827 C15orf65-201ENST00000569691 729 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
SDC1P18827 MIR4474-201ENST00000579189 78 ntBASIC2.88□□□□□ -1.95
SDC1P18827 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC2.88□□□□□ -1.95
SDC1P18827 TEX41-222ENST00000597173 1134 ntTSL 1 (best) BASIC2.88□□□□□ -1.95
SDC1P18827 ELOCP35-201ENST00000604289 336 ntBASIC2.88□□□□□ -1.95
SDC1P18827 AC012443.1-201ENST00000605605 231 ntBASIC2.88□□□□□ -1.95
SDC1P18827 AC090186.1-201ENST00000605991 572 ntBASIC2.88□□□□□ -1.95
SDC1P18827 AC007563.2-202ENST00000607591 394 ntTSL 3 BASIC2.88□□□□□ -1.95
SDC1P18827 TUG1_1.1-201ENST00000610654 145 ntBASIC2.88□□□□□ -1.95
SDC1P18827 AL110115.1-201ENST00000614396 364 ntBASIC2.88□□□□□ -1.95
SDC1P18827 AC009039.2-201ENST00000624524 529 ntBASIC2.88□□□□□ -1.95
SDC1P18827 AC245427.9-201ENST00000633713 53 ntAPPRIS P1 BASIC2.88□□□□□ -1.95
SDC1P18827 AL121759.2-201ENST00000636173 570 ntTSL 4 BASIC2.88□□□□□ -1.95
SDC1P18827 AC118273.1-201ENST00000525324 3006 ntBASIC2.88□□□□□ -1.95
SDC1P18827 AC008264.2-201ENST00000610193 3731 ntBASIC2.88□□□□□ -1.95
SDC1P18827 SOCS4-201ENST00000339298 6667 ntAPPRIS P1 TSL 1 (best) BASIC2.88□□□□□ -1.95
SDC1P18827 ARPP19-211ENST00000568196 1489 ntTSL 2 BASIC2.88□□□□□ -1.95
SDC1P18827 AC002546.1-201ENST00000588041 2504 ntBASIC2.88□□□□□ -1.95
SDC1P18827 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC2.88□□□□□ -1.95
SDC1P18827 RNF17-204ENST00000339524 2203 ntTSL 2 BASIC2.88□□□□□ -1.95
SDC1P18827 AC087359.1-201ENST00000508335 1740 ntBASIC2.88□□□□□ -1.95
SDC1P18827 AL355596.1-201ENST00000565399 3996 ntBASIC2.87□□□□□ -1.95
SDC1P18827 FGF14-201ENST00000376131 12882 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
SDC1P18827 PPHLN1-208ENST00000449194 1583 ntAPPRIS ALT1 TSL 1 (best) BASIC2.87□□□□□ -1.95
SDC1P18827 TLR6-205ENST00000610323 1443 ntTSL 5 BASIC2.87□□□□□ -1.95
SDC1P18827 TAB3P1-202ENST00000452645 1634 ntBASIC2.87□□□□□ -1.95
SDC1P18827 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC2.87□□□□□ -1.95
SDC1P18827 RNU6-1214P-201ENST00000363650 109 ntBASIC2.87□□□□□ -1.95
SDC1P18827 5S_rRNA.1-201ENST00000364415 116 ntBASIC2.87□□□□□ -1.95
SDC1P18827 SNORA54-201ENST00000384281 123 ntBASIC2.87□□□□□ -1.95
SDC1P18827 RNU2-43P-201ENST00000410306 190 ntBASIC2.87□□□□□ -1.95
SDC1P18827 ZRANB2-AS2-201ENST00000411721 518 ntTSL 3 BASIC2.87□□□□□ -1.95
SDC1P18827 RPL7P8-201ENST00000411964 730 ntBASIC2.87□□□□□ -1.95
SDC1P18827 MYO16-AS2-201ENST00000412809 436 ntTSL 3 BASIC2.87□□□□□ -1.95
SDC1P18827 SDCBPP3-201ENST00000419629 891 ntBASIC2.87□□□□□ -1.95
SDC1P18827 AL589765.2-201ENST00000420382 424 ntTSL 3 BASIC2.87□□□□□ -1.95
SDC1P18827 AL353678.1-201ENST00000422735 741 ntBASIC2.87□□□□□ -1.95
SDC1P18827 RPL23AP69-201ENST00000431134 458 ntBASIC2.87□□□□□ -1.95
SDC1P18827 AC244505.4-201ENST00000434905 287 ntBASIC2.87□□□□□ -1.95
SDC1P18827 HMGN2P20-201ENST00000437531 273 ntBASIC2.87□□□□□ -1.95
SDC1P18827 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC2.87□□□□□ -1.95
SDC1P18827 AC006028.1-201ENST00000438379 402 ntBASIC2.87□□□□□ -1.95
SDC1P18827 AL591503.2-201ENST00000442314 1005 ntBASIC2.87□□□□□ -1.95
SDC1P18827 SSXP5-201ENST00000443473 287 ntBASIC2.87□□□□□ -1.95
SDC1P18827 AL591719.1-201ENST00000444669 744 ntBASIC2.87□□□□□ -1.95
SDC1P18827 AC009299.3-202ENST00000445372 538 ntTSL 3 BASIC2.87□□□□□ -1.95
SDC1P18827 MTCO1P27-201ENST00000448269 226 ntBASIC2.87□□□□□ -1.95
SDC1P18827 RPL21P41-201ENST00000459863 264 ntBASIC2.87□□□□□ -1.95
SDC1P18827 AC091179.1-201ENST00000461606 579 ntBASIC2.87□□□□□ -1.95
SDC1P18827 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC2.87□□□□□ -1.95
SDC1P18827 AP004217.1-201ENST00000480579 346 ntBASIC2.87□□□□□ -1.95
SDC1P18827 AC132825.2-201ENST00000483901 504 ntTSL 5 BASIC2.87□□□□□ -1.95
SDC1P18827 AC092059.1-201ENST00000485347 429 ntTSL 3 BASIC2.87□□□□□ -1.95
SDC1P18827 RPL7P23-201ENST00000493874 747 ntBASIC2.87□□□□□ -1.95
SDC1P18827 AP002812.1-201ENST00000495378 474 ntBASIC2.87□□□□□ -1.95
SDC1P18827 AC084117.1-201ENST00000496975 270 ntTSL 5 BASIC2.87□□□□□ -1.95
SDC1P18827 CBX3P3-201ENST00000508108 532 ntBASIC2.87□□□□□ -1.95
SDC1P18827 LINC02496-201ENST00000509559 584 ntTSL 3 BASIC2.87□□□□□ -1.95
SDC1P18827 AC110751.1-201ENST00000511916 462 ntTSL 3 BASIC2.87□□□□□ -1.95
SDC1P18827 SUB1-211ENST00000512913 684 ntAPPRIS P1 TSL 2 BASIC2.87□□□□□ -1.95
SDC1P18827 RNA5SP385-201ENST00000515947 110 ntBASIC2.87□□□□□ -1.95
SDC1P18827 RN7SKP287-201ENST00000516546 266 ntBASIC2.87□□□□□ -1.95
SDC1P18827 RNU6-528P-201ENST00000516926 100 ntBASIC2.87□□□□□ -1.95
SDC1P18827 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC2.87□□□□□ -1.95
SDC1P18827 UBTFL10-201ENST00000528532 562 ntBASIC2.87□□□□□ -1.95
SDC1P18827 AP001458.1-201ENST00000532626 92 ntTSL 3 BASIC2.87□□□□□ -1.95
SDC1P18827 AC010196.1-201ENST00000550014 450 ntTSL 5 BASIC2.87□□□□□ -1.95
SDC1P18827 MRPL42-208ENST00000552217 920 ntAPPRIS P2 TSL 2 BASIC2.87□□□□□ -1.95
SDC1P18827 AC104002.1-201ENST00000557025 380 ntTSL 3 BASIC2.87□□□□□ -1.95
SDC1P18827 AC005951.1-201ENST00000576706 485 ntBASIC2.87□□□□□ -1.95
SDC1P18827 MTATP6P24-201ENST00000576835 677 ntBASIC2.87□□□□□ -1.95
SDC1P18827 AC118755.2-201ENST00000584676 212 ntTSL 3 BASIC2.87□□□□□ -1.95
SDC1P18827 LINC01482-203ENST00000589610 468 ntTSL 3 BASIC2.87□□□□□ -1.95
SDC1P18827 SOX2-OT-224ENST00000595313 716 ntTSL 5 BASIC2.87□□□□□ -1.95
SDC1P18827 AC093424.1-201ENST00000604999 338 ntBASIC2.87□□□□□ -1.95
SDC1P18827 C8orf89-202ENST00000624510 658 ntAPPRIS P2 TSL 3 BASIC2.87□□□□□ -1.95
SDC1P18827 AL353743.1-202ENST00000431724 1695 ntBASIC2.87□□□□□ -1.95
SDC1P18827 MME-216ENST00000615825 5523 ntAPPRIS P1 TSL 1 (best) BASIC2.87□□□□□ -1.95
SDC1P18827 AC007256.1-201ENST00000392253 2765 ntBASIC2.87□□□□□ -1.95
SDC1P18827 AK9-201ENST00000285397 2566 ntTSL 1 (best) BASIC2.87□□□□□ -1.95
SDC1P18827 ZNF479-202ENST00000331162 2072 ntAPPRIS P1 TSL 1 (best) BASIC2.86□□□□□ -1.95
SDC1P18827 POLK-217ENST00000515295 1438 ntTSL 1 (best) BASIC2.86□□□□□ -1.95
SDC1P18827 HMGN5-201ENST00000358130 2126 ntAPPRIS P2 TSL 2 BASIC2.86□□□□□ -1.95
SDC1P18827 AL035425.3-201ENST00000564206 4996 ntBASIC2.86□□□□□ -1.95
SDC1P18827 AL161781.1-201ENST00000354277 403 ntBASIC2.86□□□□□ -1.95
SDC1P18827 RNU6-462P-201ENST00000362659 105 ntBASIC2.86□□□□□ -1.95
SDC1P18827 RNU6-433P-201ENST00000363216 104 ntBASIC2.86□□□□□ -1.95
SDC1P18827 RNU6-173P-201ENST00000364215 104 ntBASIC2.86□□□□□ -1.95
SDC1P18827 RNA5SP267-201ENST00000364893 126 ntBASIC2.86□□□□□ -1.95
SDC1P18827 RNU6-744P-201ENST00000365557 107 ntBASIC2.86□□□□□ -1.95
SDC1P18827 RNU6-1316P-201ENST00000384242 108 ntBASIC2.86□□□□□ -1.95
SDC1P18827 RNU6-1207P-201ENST00000384343 107 ntBASIC2.86□□□□□ -1.95
SDC1P18827 U3.19-201ENST00000390893 196 ntBASIC2.86□□□□□ -1.95
SDC1P18827 AF130351.1-202ENST00000400562 808 ntAPPRIS P5 TSL 3 BASIC2.86□□□□□ -1.95
SDC1P18827 RPS3AP24-201ENST00000407896 734 ntBASIC2.86□□□□□ -1.95
Retrieved 100 of 98,524 protein–RNA pairs in 95.7 ms