Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 COX6CP5-201ENST00000527162 228 ntBASIC1.7□□□□□ -2.14
COL6A3P12111 AC015771.1-201ENST00000527283 554 ntTSL 4 BASIC1.7□□□□□ -2.14
COL6A3P12111 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC1.7□□□□□ -2.14
COL6A3P12111 MIR502-201ENST00000606349 86 ntBASIC1.7□□□□□ -2.14
COL6A3P12111 5S_rRNA.12-201ENST00000617631 107 ntBASIC1.7□□□□□ -2.14
COL6A3P12111 CALM1P1-201ENST00000442082 433 ntBASIC1.7□□□□□ -2.14
COL6A3P12111 MTERF3-205ENST00000524341 776 ntTSL 3 BASIC1.7□□□□□ -2.14
COL6A3P12111 AL137804.1-201ENST00000528872 576 ntTSL 3 BASIC1.7□□□□□ -2.14
COL6A3P12111 MIR4506-201ENST00000584693 77 ntBASIC1.7□□□□□ -2.14
COL6A3P12111 TCF4-AS2-201ENST00000586467 445 ntTSL 2 BASIC1.7□□□□□ -2.14
COL6A3P12111 AC090970.3-201ENST00000612566 866 ntBASIC1.7□□□□□ -2.14
COL6A3P12111 SCN1A-219ENST00000641575 12874 ntAPPRIS ALT1 BASIC1.7□□□□□ -2.14
COL6A3P12111 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC1.7□□□□□ -2.14
COL6A3P12111 AGL-205ENST00000370163 7166 ntAPPRIS P1 TSL 1 (best) BASIC1.7□□□□□ -2.14
COL6A3P12111 AL592437.2-201ENST00000421655 2434 ntBASIC1.7□□□□□ -2.14
COL6A3P12111 RNU6-492P-201ENST00000363035 104 ntBASIC1.69□□□□□ -2.14
COL6A3P12111 RNU4-13P-201ENST00000364019 141 ntBASIC1.69□□□□□ -2.14
COL6A3P12111 LINC01474-202ENST00000449235 628 ntTSL 3 BASIC1.69□□□□□ -2.14
COL6A3P12111 RPL23AP35-201ENST00000451906 501 ntBASIC1.69□□□□□ -2.14
COL6A3P12111 PSMA4-205ENST00000558281 773 ntTSL 3 BASIC1.69□□□□□ -2.14
COL6A3P12111 AC004542.1-201ENST00000602955 264 ntTSL 3 BASIC1.69□□□□□ -2.14
COL6A3P12111 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.69□□□□□ -2.14
COL6A3P12111 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.69□□□□□ -2.14
COL6A3P12111 AC092881.1-201ENST00000638218 2733 ntBASIC1.69□□□□□ -2.14
COL6A3P12111 OR1A2-201ENST00000381951 930 ntAPPRIS P1 BASIC1.69□□□□□ -2.14
COL6A3P12111 MIR193B-201ENST00000384907 83 ntBASIC1.69□□□□□ -2.14
COL6A3P12111 AC005208.1-201ENST00000435112 599 ntTSL 3 BASIC1.69□□□□□ -2.14
COL6A3P12111 RPS27P5-201ENST00000444247 244 ntBASIC1.69□□□□□ -2.14
COL6A3P12111 RPL39P40-201ENST00000445481 146 ntBASIC1.69□□□□□ -2.14
COL6A3P12111 AC036111.3-201ENST00000526389 112 ntBASIC1.69□□□□□ -2.14
COL6A3P12111 AC012378.1-201ENST00000561155 364 ntTSL 3 BASIC1.69□□□□□ -2.14
COL6A3P12111 AC104581.2-201ENST00000572227 430 ntBASIC1.69□□□□□ -2.14
COL6A3P12111 TPTE2-203ENST00000390680 1558 ntTSL 1 (best) BASIC1.69□□□□□ -2.14
COL6A3P12111 MTCO1P14-201ENST00000441695 1559 ntBASIC1.69□□□□□ -2.14
COL6A3P12111 SNRPEP3-201ENST00000338402 276 ntBASIC1.69□□□□□ -2.14
COL6A3P12111 AL445305.1-201ENST00000432577 575 ntBASIC1.69□□□□□ -2.14
COL6A3P12111 IGHVIII-5-1-201ENST00000523059 99 ntBASIC1.69□□□□□ -2.14
COL6A3P12111 PDCD5P1-201ENST00000543528 309 ntBASIC1.69□□□□□ -2.14
COL6A3P12111 LINC01481-201ENST00000552998 629 ntTSL 2 BASIC1.69□□□□□ -2.14
COL6A3P12111 LINC02246-204ENST00000625278 740 ntTSL 5 BASIC1.69□□□□□ -2.14
COL6A3P12111 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.69□□□□□ -2.14
COL6A3P12111 KCNT2-202ENST00000367433 5883 ntTSL 1 (best) BASIC1.69□□□□□ -2.14
COL6A3P12111 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC1.68□□□□□ -2.14
COL6A3P12111 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC1.68□□□□□ -2.14
COL6A3P12111 CAPZA3-201ENST00000317658 1087 ntAPPRIS P1 BASIC1.68□□□□□ -2.14
COL6A3P12111 MTCO1P48-201ENST00000448024 1096 ntBASIC1.68□□□□□ -2.14
COL6A3P12111 AL049830.2-201ENST00000480072 201 ntBASIC1.68□□□□□ -2.14
COL6A3P12111 AC087373.1-201ENST00000524920 491 ntBASIC1.68□□□□□ -2.14
COL6A3P12111 RNA5SP27-201ENST00000363839 119 ntBASIC1.68□□□□□ -2.14
COL6A3P12111 MIR216A-201ENST00000385063 110 ntBASIC1.68□□□□□ -2.14
COL6A3P12111 AL121972.1-201ENST00000402023 252 ntBASIC1.68□□□□□ -2.14
COL6A3P12111 AL512430.2-201ENST00000406786 339 ntBASIC1.68□□□□□ -2.14
COL6A3P12111 EBAG9P1-201ENST00000418955 543 ntBASIC1.68□□□□□ -2.14
COL6A3P12111 CKS1BP5-201ENST00000434172 273 ntBASIC1.68□□□□□ -2.14
COL6A3P12111 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC1.68□□□□□ -2.14
COL6A3P12111 LINC01326-201ENST00000495159 755 ntTSL 2 BASIC1.68□□□□□ -2.14
COL6A3P12111 AC105245.1-201ENST00000581934 244 ntBASIC1.68□□□□□ -2.14
COL6A3P12111 AC098657.3-201ENST00000620434 263 ntBASIC1.68□□□□□ -2.14
COL6A3P12111 AC093010.3-201ENST00000570269 15214 ntBASIC1.68□□□□□ -2.14
COL6A3P12111 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC1.68□□□□□ -2.14
COL6A3P12111 CHD1-201ENST00000284049 6457 ntAPPRIS P1 TSL 1 (best) BASIC1.67□□□□□ -2.14
COL6A3P12111 HMGB1P5-201ENST00000255320 642 ntBASIC1.67□□□□□ -2.14
COL6A3P12111 XKRYP4-201ENST00000414395 483 ntBASIC1.67□□□□□ -2.14
COL6A3P12111 AC017078.1-201ENST00000416146 368 ntBASIC1.67□□□□□ -2.14
COL6A3P12111 AL354695.1-201ENST00000427935 228 ntBASIC1.67□□□□□ -2.14
COL6A3P12111 XKRYP5-201ENST00000449659 483 ntBASIC1.67□□□□□ -2.14
COL6A3P12111 HMGB3P21-201ENST00000452483 547 ntBASIC1.67□□□□□ -2.14
COL6A3P12111 BOLA3P3-201ENST00000505182 232 ntBASIC1.67□□□□□ -2.14
COL6A3P12111 AC124283.4-201ENST00000581815 456 ntBASIC1.67□□□□□ -2.14
COL6A3P12111 AC013444.2-201ENST00000603317 787 ntBASIC1.67□□□□□ -2.14
COL6A3P12111 AC005034.5-201ENST00000604219 466 ntBASIC1.67□□□□□ -2.14
COL6A3P12111 VN1R7P-201ENST00000619242 903 ntBASIC1.67□□□□□ -2.14
COL6A3P12111 AC007256.1-201ENST00000392253 2765 ntBASIC1.67□□□□□ -2.14
COL6A3P12111 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC1.67□□□□□ -2.14
COL6A3P12111 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.67□□□□□ -2.14
COL6A3P12111 ARF4P2-201ENST00000430209 526 ntBASIC1.67□□□□□ -2.14
COL6A3P12111 AL354977.1-201ENST00000438147 679 ntTSL 5 BASIC1.67□□□□□ -2.14
COL6A3P12111 AC022447.3-201ENST00000506865 495 ntBASIC1.67□□□□□ -2.14
COL6A3P12111 CYSLTR1-201ENST00000373304 2576 ntAPPRIS P1 TSL 1 (best) BASIC1.67□□□□□ -2.14
COL6A3P12111 U3.37-201ENST00000408528 213 ntBASIC1.67□□□□□ -2.14
COL6A3P12111 USP9YP33-201ENST00000412220 421 ntBASIC1.67□□□□□ -2.14
COL6A3P12111 EZH2P1-201ENST00000431167 291 ntBASIC1.67□□□□□ -2.14
COL6A3P12111 RPL39L-202ENST00000433055 749 ntAPPRIS P1 TSL 2 BASIC1.67□□□□□ -2.14
COL6A3P12111 USP9YP35-201ENST00000435696 412 ntBASIC1.67□□□□□ -2.14
COL6A3P12111 AC090753.1-201ENST00000522087 331 ntTSL 3 BASIC1.67□□□□□ -2.14
COL6A3P12111 AC090751.1-201ENST00000566966 267 ntBASIC1.67□□□□□ -2.14
COL6A3P12111 ABI1P1-201ENST00000603375 1120 ntBASIC1.67□□□□□ -2.14
COL6A3P12111 AC091152.2-201ENST00000591628 2569 ntBASIC1.67□□□□□ -2.14
COL6A3P12111 ZNF876P-202ENST00000398732 1485 ntBASIC1.67□□□□□ -2.14
COL6A3P12111 AC013286.1-201ENST00000412137 381 ntTSL 5 BASIC1.66□□□□□ -2.14
COL6A3P12111 AC009961.3-201ENST00000449832 765 ntBASIC1.66□□□□□ -2.14
COL6A3P12111 AC109486.1-201ENST00000486833 374 ntBASIC1.66□□□□□ -2.14
COL6A3P12111 SNORA31.15-201ENST00000516771 132 ntBASIC1.66□□□□□ -2.14
COL6A3P12111 AC010511.1-202ENST00000590229 573 ntTSL 4 BASIC1.66□□□□□ -2.14
COL6A3P12111 AC091488.1-201ENST00000604239 660 ntBASIC1.66□□□□□ -2.14
COL6A3P12111 SERPINI2-201ENST00000264677 1678 ntAPPRIS P1 TSL 1 (best) BASIC1.66□□□□□ -2.14
COL6A3P12111 MCMDC2-201ENST00000313616 2043 ntTSL 2 BASIC1.66□□□□□ -2.14
COL6A3P12111 MIR373-201ENST00000362273 69 ntBASIC1.66□□□□□ -2.14
COL6A3P12111 MTND4P13-201ENST00000402078 1023 ntBASIC1.66□□□□□ -2.14
COL6A3P12111 RPL31P35-201ENST00000431058 377 ntBASIC1.66□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 101.6 ms