Protein–RNA interactions for Protein: Q9H4L4

SENP3, Sentrin-specific protease 3, humanhuman

Predicted RBP Predictions only

Length 574 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3Q9H4L4 CNGA1-209ENST00000544810 2722 ntAPPRIS ALT2 TSL 5 BASIC10□□□□□ -0.81
SENP3Q9H4L4 NCAPH-201ENST00000240423 2763 ntAPPRIS P2 TSL 1 (best) BASIC10□□□□□ -0.81
SENP3Q9H4L4 UGT2A1-203ENST00000503640 2595 ntAPPRIS P1 TSL 1 (best) BASIC10□□□□□ -0.81
SENP3Q9H4L4 ZMYND11-204ENST00000381604 4066 ntTSL 5 BASIC10□□□□□ -0.81
SENP3Q9H4L4 KLHL13-206ENST00000469946 2353 ntTSL 2 BASIC10□□□□□ -0.81
SENP3Q9H4L4 AC112243.1-201ENST00000623949 3851 ntBASIC10□□□□□ -0.81
SENP3Q9H4L4 ASAH1-267ENST00000637991 2399 ntTSL 5 BASIC10□□□□□ -0.81
SENP3Q9H4L4 CFLAR-201ENST00000309955 14672 ntAPPRIS P3 TSL 1 (best) BASIC10□□□□□ -0.81
SENP3Q9H4L4 TATDN2P3-201ENST00000452855 3665 ntBASIC10□□□□□ -0.81
SENP3Q9H4L4 GAPVD1-201ENST00000265956 2667 ntTSL 5 BASIC10□□□□□ -0.81
SENP3Q9H4L4 AC008505.1-204ENST00000637363 2714 ntTSL 5 BASIC9.99□□□□□ -0.81
SENP3Q9H4L4 PARP4-201ENST00000381989 5474 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
SENP3Q9H4L4 HDAC2-AS2-208ENST00000519104 2016 ntTSL 1 (best) BASIC9.99□□□□□ -0.81
SENP3Q9H4L4 PLCH1-202ENST00000340059 6168 ntAPPRIS ALT2 TSL 1 (best) BASIC9.99□□□□□ -0.81
SENP3Q9H4L4 BICRAL-202ENST00000394168 6515 ntAPPRIS P1 TSL 1 (best) BASIC9.99□□□□□ -0.81
SENP3Q9H4L4 RPS26P48-201ENST00000491713 339 ntBASIC9.99□□□□□ -0.81
SENP3Q9H4L4 RNU6-126P-201ENST00000516685 103 ntBASIC9.99□□□□□ -0.81
SENP3Q9H4L4 SUMO2P16-201ENST00000519475 264 ntBASIC9.99□□□□□ -0.81
SENP3Q9H4L4 TUG1-202ENST00000521091 2110 ntTSL 1 (best) BASIC9.99□□□□□ -0.81
SENP3Q9H4L4 EIF4A2P5-201ENST00000529914 499 ntBASIC9.99□□□□□ -0.81
SENP3Q9H4L4 LINC00933-203ENST00000559812 219 ntBASIC9.99□□□□□ -0.81
SENP3Q9H4L4 AC040162.2-201ENST00000573092 157 ntBASIC9.99□□□□□ -0.81
SENP3Q9H4L4 GAPLINC-202ENST00000579007 643 ntTSL 3 BASIC9.99□□□□□ -0.81
SENP3Q9H4L4 MIR4777-201ENST00000583710 86 ntBASIC9.99□□□□□ -0.81
SENP3Q9H4L4 AC022706.1-202ENST00000585387 540 ntTSL 3 BASIC9.99□□□□□ -0.81
SENP3Q9H4L4 AL133342.1-201ENST00000618168 366 ntTSL 3 BASIC9.99□□□□□ -0.81
SENP3Q9H4L4 AC132068.1-201ENST00000623805 459 ntBASIC9.99□□□□□ -0.81
SENP3Q9H4L4 NPIPB13-201ENST00000520915 3584 ntAPPRIS P1 TSL 5 BASIC9.99□□□□□ -0.81
SENP3Q9H4L4 OR2T2-203ENST00000642130 3331 ntAPPRIS P1 BASIC9.99□□□□□ -0.81
SENP3Q9H4L4 ZNF790-206ENST00000613249 2183 ntAPPRIS P1 TSL 4 BASIC9.99□□□□□ -0.81
SENP3Q9H4L4 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC9.99□□□□□ -0.81
SENP3Q9H4L4 ZNFX1-202ENST00000371752 7212 ntAPPRIS P1 TSL 5 BASIC9.98□□□□□ -0.81
SENP3Q9H4L4 AC079915.1-201ENST00000584382 2780 ntTSL 2 BASIC9.98□□□□□ -0.81
SENP3Q9H4L4 AL033384.1-202ENST00000431554 3104 ntTSL 1 (best) BASIC9.98□□□□□ -0.81
SENP3Q9H4L4 MTIF2-201ENST00000263629 2528 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
SENP3Q9H4L4 ADH7-202ENST00000437033 2516 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
SENP3Q9H4L4 AL365440.2-201ENST00000419738 2597 ntTSL 2 BASIC9.98□□□□□ -0.81
SENP3Q9H4L4 BRCA1-221ENST00000493795 5732 ntTSL 5 BASIC9.98□□□□□ -0.81
SENP3Q9H4L4 SLC16A4-201ENST00000369779 2632 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
SENP3Q9H4L4 LRRC37A3-202ENST00000334962 2654 ntTSL 1 (best) BASIC9.98□□□□□ -0.81
SENP3Q9H4L4 CEACAM1-207ENST00000403444 3427 ntAPPRIS ALT2 TSL 1 (best) BASIC9.98□□□□□ -0.81
SENP3Q9H4L4 LIX1L-AS1-203ENST00000421764 287 ntTSL 2 BASIC9.98□□□□□ -0.81
SENP3Q9H4L4 ATP6V1G1P4-201ENST00000438388 335 ntBASIC9.98□□□□□ -0.81
SENP3Q9H4L4 ZBTB40-IT1-201ENST00000438551 273 ntTSL 3 BASIC9.98□□□□□ -0.81
SENP3Q9H4L4 PIK3IP1-AS1-201ENST00000440456 554 ntTSL 3 BASIC9.98□□□□□ -0.81
SENP3Q9H4L4 RPL21P129-201ENST00000491732 478 ntBASIC9.98□□□□□ -0.81
SENP3Q9H4L4 Y_RNA.710-201ENST00000516975 110 ntBASIC9.98□□□□□ -0.81
SENP3Q9H4L4 MIR4694-201ENST00000578534 80 ntBASIC9.98□□□□□ -0.81
SENP3Q9H4L4 KCNS3-202ENST00000403915 2397 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
SENP3Q9H4L4 AFTPH-204ENST00000409933 2811 ntAPPRIS ALT1 TSL 1 (best) BASIC9.98□□□□□ -0.81
SENP3Q9H4L4 ENSA-204ENST00000356527 2546 ntTSL 1 (best) BASIC9.98□□□□□ -0.81
SENP3Q9H4L4 AASDH-203ENST00000502617 3004 ntTSL 1 (best) BASIC9.98□□□□□ -0.81
SENP3Q9H4L4 AP003175.1-201ENST00000641383 6658 ntBASIC9.98□□□□□ -0.81
SENP3Q9H4L4 FAM13C-216ENST00000618427 3458 ntAPPRIS ALT2 TSL 2 BASIC9.98□□□□□ -0.81
SENP3Q9H4L4 HNRNPA1P54-201ENST00000411857 9714 ntBASIC9.97□□□□□ -0.81
SENP3Q9H4L4 CACNB4-225ENST00000636442 4232 ntTSL 5 BASIC9.97□□□□□ -0.81
SENP3Q9H4L4 PPP1R12B-216ENST00000608999 15248 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
SENP3Q9H4L4 RABGEF1-203ENST00000439720 3065 ntTSL 2 BASIC9.97□□□□□ -0.81
SENP3Q9H4L4 AC012213.2-201ENST00000562917 4597 ntBASIC9.97□□□□□ -0.81
SENP3Q9H4L4 NSA2-205ENST00000610426 4594 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
SENP3Q9H4L4 TLN2-209ENST00000561311 11880 ntAPPRIS P1 TSL 5 BASIC9.97□□□□□ -0.81
SENP3Q9H4L4 ARPP21-221ENST00000444190 3182 ntTSL 1 (best) BASIC9.97□□□□□ -0.81
SENP3Q9H4L4 CDH13-201ENST00000268613 2722 ntAPPRIS P4 TSL 2 BASIC9.97□□□□□ -0.81
SENP3Q9H4L4 CTNND1-223ENST00000529986 5727 ntTSL 1 (best) BASIC9.97□□□□□ -0.81
SENP3Q9H4L4 CTNND1-231ENST00000532463 5749 ntTSL 1 (best) BASIC9.97□□□□□ -0.81
SENP3Q9H4L4 RNU6-832P-201ENST00000363319 107 ntBASIC9.97□□□□□ -0.81
SENP3Q9H4L4 NDUFB1P1-201ENST00000435191 180 ntBASIC9.97□□□□□ -0.81
SENP3Q9H4L4 RPS12P18-201ENST00000442381 270 ntBASIC9.97□□□□□ -0.81
SENP3Q9H4L4 GEMIN8P3-201ENST00000445417 720 ntBASIC9.97□□□□□ -0.81
SENP3Q9H4L4 PTMAP1-205ENST00000455552 325 ntBASIC9.97□□□□□ -0.81
SENP3Q9H4L4 MLLT10P2-201ENST00000506434 249 ntBASIC9.97□□□□□ -0.81
SENP3Q9H4L4 AC068992.1-201ENST00000521411 543 ntTSL 5 BASIC9.97□□□□□ -0.81
SENP3Q9H4L4 AP000873.2-204ENST00000530825 375 ntTSL 3 BASIC9.97□□□□□ -0.81
SENP3Q9H4L4 MIR3614-201ENST00000581261 86 ntBASIC9.97□□□□□ -0.81
SENP3Q9H4L4 GLUD1P2-201ENST00000583339 201 ntBASIC9.97□□□□□ -0.81
SENP3Q9H4L4 GLUD1P8-201ENST00000585063 203 ntBASIC9.97□□□□□ -0.81
SENP3Q9H4L4 CR382285.1-202ENST00000604687 547 ntBASIC9.97□□□□□ -0.81
SENP3Q9H4L4 AC061999.1-201ENST00000624454 177 ntBASIC9.97□□□□□ -0.81
SENP3Q9H4L4 UG0898H09-202ENST00000623646 7040 ntBASIC9.97□□□□□ -0.81
SENP3Q9H4L4 PIK3R3-202ENST00000372006 5019 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
SENP3Q9H4L4 LIPG-201ENST00000261292 10441 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
SENP3Q9H4L4 ACSL1-212ENST00000622937 4103 ntTSL 2 BASIC9.97□□□□□ -0.81
SENP3Q9H4L4 ZMYM2-210ENST00000610343 10200 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
SENP3Q9H4L4 C5orf34-201ENST00000306862 2507 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
SENP3Q9H4L4 LRRC49-224ENST00000560691 2531 ntTSL 2 BASIC9.97□□□□□ -0.81
SENP3Q9H4L4 AKAP5-201ENST00000320636 2601 ntAPPRIS P1 BASIC9.97□□□□□ -0.81
SENP3Q9H4L4 SIRPB1-205ENST00000381605 3241 ntAPPRIS P3 TSL 1 (best) BASIC9.97□□□□□ -0.81
SENP3Q9H4L4 NOL8-214ENST00000535387 3390 ntAPPRIS ALT2 TSL 5 BASIC9.97□□□□□ -0.81
SENP3Q9H4L4 AP002364.1-201ENST00000623330 3386 ntBASIC9.97□□□□□ -0.81
SENP3Q9H4L4 SATL1-201ENST00000395409 2192 ntAPPRIS P1 TSL 5 BASIC9.97□□□□□ -0.81
SENP3Q9H4L4 AC093831.2-201ENST00000624393 3427 ntBASIC9.97□□□□□ -0.81
SENP3Q9H4L4 ABCB5-205ENST00000443026 2247 ntTSL 1 (best) BASIC9.97□□□□□ -0.81
SENP3Q9H4L4 UTP15-201ENST00000296792 3687 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.81
SENP3Q9H4L4 MAPK6-201ENST00000261845 5345 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.81
SENP3Q9H4L4 LINC01920-201ENST00000441356 2528 ntTSL 1 (best) BASIC9.96□□□□□ -0.81
SENP3Q9H4L4 TTLL4-210ENST00000442769 3971 ntTSL 5 BASIC9.96□□□□□ -0.81
SENP3Q9H4L4 HBS1L-206ENST00000415177 2636 ntTSL 5 BASIC9.96□□□□□ -0.81
SENP3Q9H4L4 TBCK-205ENST00000432496 3362 ntAPPRIS P1 TSL 2 BASIC9.96□□□□□ -0.81
SENP3Q9H4L4 IKZF3-203ENST00000346872 9667 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.81
SENP3Q9H4L4 Z98749.2-208ENST00000381646 500 ntBASIC9.96□□□□□ -0.82
Retrieved 100 of 98,524 protein–RNA pairs in 78 ms