Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 AP000432.1-201ENST00000416641 516 ntTSL 3 BASIC3.84□□□□□ -1.79
SKA1Q96BD8 GPC5-AS1-201ENST00000419288 393 ntTSL 3 BASIC3.84□□□□□ -1.79
SKA1Q96BD8 AL391832.1-201ENST00000423963 423 ntTSL 5 BASIC3.84□□□□□ -1.79
SKA1Q96BD8 AL445669.1-201ENST00000426743 755 ntBASIC3.84□□□□□ -1.79
SKA1Q96BD8 AC008568.1-203ENST00000433406 765 ntTSL 3 BASIC3.84□□□□□ -1.79
SKA1Q96BD8 RPL23AP83-201ENST00000434984 473 ntBASIC3.84□□□□□ -1.79
SKA1Q96BD8 MIR548XHG-203ENST00000437492 853 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
SKA1Q96BD8 LINC00354-202ENST00000440860 376 ntTSL 2 BASIC3.84□□□□□ -1.79
SKA1Q96BD8 NUTM2A-AS1-209ENST00000447424 571 ntTSL 3 BASIC3.84□□□□□ -1.79
SKA1Q96BD8 AL646090.1-201ENST00000449928 492 ntTSL 5 BASIC3.84□□□□□ -1.79
SKA1Q96BD8 AC006042.4-201ENST00000451066 692 ntTSL 5 BASIC3.84□□□□□ -1.79
SKA1Q96BD8 NEGR1-IT1-201ENST00000453121 534 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
SKA1Q96BD8 PRSS3P4-201ENST00000453323 162 ntBASIC3.84□□□□□ -1.79
SKA1Q96BD8 RPS20P20-201ENST00000460498 340 ntBASIC3.84□□□□□ -1.79
SKA1Q96BD8 TRBV12-2-201ENST00000489763 344 ntBASIC3.84□□□□□ -1.79
SKA1Q96BD8 KCTD9P5-201ENST00000504141 1170 ntBASIC3.84□□□□□ -1.79
SKA1Q96BD8 LTV1P1-201ENST00000510683 1237 ntBASIC3.84□□□□□ -1.79
SKA1Q96BD8 GYPA-209ENST00000512789 258 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
SKA1Q96BD8 AC106744.2-202ENST00000515123 448 ntTSL 3 BASIC3.84□□□□□ -1.79
SKA1Q96BD8 RN7SKP18-201ENST00000516005 275 ntBASIC3.84□□□□□ -1.79
SKA1Q96BD8 RNU6-1256P-201ENST00000516539 103 ntBASIC3.84□□□□□ -1.79
SKA1Q96BD8 AC090802.1-201ENST00000520870 445 ntTSL 2 BASIC3.84□□□□□ -1.79
SKA1Q96BD8 A2ML1-AS1-201ENST00000537288 452 ntTSL 3 BASIC3.84□□□□□ -1.79
SKA1Q96BD8 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC3.84□□□□□ -1.79
SKA1Q96BD8 LINC01467-201ENST00000554211 1187 ntTSL 1 (best) BASIC3.84□□□□□ -1.79
SKA1Q96BD8 LINC00640-203ENST00000556479 576 ntTSL 2 BASIC3.84□□□□□ -1.79
SKA1Q96BD8 AC087499.8-201ENST00000578406 226 ntBASIC3.84□□□□□ -1.79
SKA1Q96BD8 AP001004.1-201ENST00000582468 324 ntBASIC3.84□□□□□ -1.79
SKA1Q96BD8 MIR5187-201ENST00000583479 76 ntBASIC3.84□□□□□ -1.79
SKA1Q96BD8 HSPE1P7-201ENST00000604681 321 ntBASIC3.84□□□□□ -1.79
SKA1Q96BD8 AC018714.1-201ENST00000605028 208 ntBASIC3.84□□□□□ -1.79
SKA1Q96BD8 AL139344.1-201ENST00000605228 195 ntBASIC3.84□□□□□ -1.79
SKA1Q96BD8 U3.45-201ENST00000607547 219 ntBASIC3.84□□□□□ -1.79
SKA1Q96BD8 AC068506.1-202ENST00000613388 545 ntTSL 3 BASIC3.84□□□□□ -1.79
SKA1Q96BD8 OR6C71P-202ENST00000641886 1107 ntBASIC3.84□□□□□ -1.79
SKA1Q96BD8 CENPJ-205ENST00000545981 4299 ntTSL 2 BASIC3.84□□□□□ -1.79
SKA1Q96BD8 MTND5P33-201ENST00000571250 1450 ntBASIC3.84□□□□□ -1.8
SKA1Q96BD8 TMCO5A-203ENST00000558158 2894 ntAPPRIS ALT2 TSL 3 BASIC3.84□□□□□ -1.8
SKA1Q96BD8 TRIQK-212ENST00000520686 1808 ntAPPRIS P1 TSL 1 (best) BASIC3.84□□□□□ -1.8
SKA1Q96BD8 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC3.83□□□□□ -1.8
SKA1Q96BD8 MDM2-205ENST00000348801 798 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
SKA1Q96BD8 RNA5SP387-201ENST00000364226 106 ntBASIC3.83□□□□□ -1.8
SKA1Q96BD8 RNA5SP72-201ENST00000364442 117 ntBASIC3.83□□□□□ -1.8
SKA1Q96BD8 SNORA73.2-201ENST00000364946 201 ntBASIC3.83□□□□□ -1.8
SKA1Q96BD8 Y_RNA.333-201ENST00000365274 102 ntBASIC3.83□□□□□ -1.8
SKA1Q96BD8 EI24P2-201ENST00000397776 1076 ntBASIC3.83□□□□□ -1.8
SKA1Q96BD8 AL109755.1-201ENST00000401791 649 ntBASIC3.83□□□□□ -1.8
SKA1Q96BD8 TXNP7-201ENST00000406296 293 ntBASIC3.83□□□□□ -1.8
SKA1Q96BD8 AC091705.1-201ENST00000412197 209 ntTSL 5 BASIC3.83□□□□□ -1.8
SKA1Q96BD8 RPS29P4-201ENST00000414733 161 ntBASIC3.83□□□□□ -1.8
SKA1Q96BD8 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
SKA1Q96BD8 UBE2FP1-201ENST00000416536 447 ntBASIC3.83□□□□□ -1.8
SKA1Q96BD8 AL035423.1-201ENST00000420331 213 ntBASIC3.83□□□□□ -1.8
SKA1Q96BD8 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC3.83□□□□□ -1.8
SKA1Q96BD8 AC140076.1-201ENST00000449897 361 ntBASIC3.83□□□□□ -1.8
SKA1Q96BD8 OR6C5P-201ENST00000452388 923 ntBASIC3.83□□□□□ -1.8
SKA1Q96BD8 AL158069.1-201ENST00000454131 455 ntTSL 5 BASIC3.83□□□□□ -1.8
SKA1Q96BD8 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC3.83□□□□□ -1.8
SKA1Q96BD8 ATG12P2-201ENST00000456830 416 ntBASIC3.83□□□□□ -1.8
SKA1Q96BD8 AL133162.1-201ENST00000463228 453 ntBASIC3.83□□□□□ -1.8
SKA1Q96BD8 ANKRD36B-207ENST00000497329 649 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
SKA1Q96BD8 PPP2R2B-IT1-201ENST00000505921 447 ntTSL 3 BASIC3.83□□□□□ -1.8
SKA1Q96BD8 AC087369.1-201ENST00000520775 996 ntBASIC3.83□□□□□ -1.8
SKA1Q96BD8 AC073530.1-201ENST00000535917 775 ntTSL 5 BASIC3.83□□□□□ -1.8
SKA1Q96BD8 AC010175.1-201ENST00000538219 224 ntTSL 5 BASIC3.83□□□□□ -1.8
SKA1Q96BD8 CACNA1C-AS4-201ENST00000544415 735 ntTSL 3 BASIC3.83□□□□□ -1.8
SKA1Q96BD8 PPFIA2-AS1-205ENST00000550938 790 ntTSL 3 BASIC3.83□□□□□ -1.8
SKA1Q96BD8 AC090503.2-201ENST00000551135 981 ntTSL 3 BASIC3.83□□□□□ -1.8
SKA1Q96BD8 HMGB1P14-201ENST00000557424 591 ntBASIC3.83□□□□□ -1.8
SKA1Q96BD8 AC009137.1-201ENST00000562790 260 ntTSL 3 BASIC3.83□□□□□ -1.8
SKA1Q96BD8 AC009094.1-201ENST00000564443 426 ntBASIC3.83□□□□□ -1.8
SKA1Q96BD8 LINC01735-201ENST00000568112 279 ntTSL 3 BASIC3.83□□□□□ -1.8
SKA1Q96BD8 MTATP6P24-201ENST00000576835 677 ntBASIC3.83□□□□□ -1.8
SKA1Q96BD8 AC011461.1-201ENST00000592671 357 ntTSL 3 BASIC3.83□□□□□ -1.8
SKA1Q96BD8 VN1R90P-201ENST00000595717 726 ntBASIC3.83□□□□□ -1.8
SKA1Q96BD8 ANKRD36C-207ENST00000612359 650 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
SKA1Q96BD8 AL391597.2-201ENST00000635698 479 ntTSL 5 BASIC3.83□□□□□ -1.8
SKA1Q96BD8 PCDH11X-208ENST00000504220 4017 ntAPPRIS ALT2 TSL 1 (best) BASIC3.83□□□□□ -1.8
SKA1Q96BD8 MTND4P16-201ENST00000466108 1367 ntBASIC3.83□□□□□ -1.8
SKA1Q96BD8 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
SKA1Q96BD8 ATXN3-248ENST00000558190 26812 ntAPPRIS P1 TSL 1 (best) BASIC3.83□□□□□ -1.8
SKA1Q96BD8 AC233263.6-201ENST00000631132 1963 ntBASIC3.83□□□□□ -1.8
SKA1Q96BD8 HELZ-201ENST00000358691 13810 ntTSL 1 (best) BASIC3.83□□□□□ -1.8
SKA1Q96BD8 ZNF280D-201ENST00000267807 4328 ntAPPRIS P3 TSL 1 (best) BASIC3.83□□□□□ -1.8
SKA1Q96BD8 ADAMTS9-AS1-207ENST00000594810 3609 ntTSL 4 BASIC3.82□□□□□ -1.8
SKA1Q96BD8 ADGRV1-201ENST00000405460 19557 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
SKA1Q96BD8 AC006378.2-201ENST00000623178 2476 ntBASIC3.82□□□□□ -1.8
SKA1Q96BD8 USP9Y-201ENST00000338981 10036 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
SKA1Q96BD8 IQCG-205ENST00000455191 1981 ntAPPRIS P1 TSL 2 BASIC3.82□□□□□ -1.8
SKA1Q96BD8 SERPINI2-209ENST00000616363 1769 ntTSL 5 BASIC3.82□□□□□ -1.8
SKA1Q96BD8 PKHD1L1-201ENST00000378402 13076 ntAPPRIS P1 TSL 1 (best) BASIC3.82□□□□□ -1.8
SKA1Q96BD8 MACF1-204ENST00000372915 23440 ntAPPRIS ALT2 TSL 5 BASIC3.82□□□□□ -1.8
SKA1Q96BD8 SNORA14A-201ENST00000364773 135 ntBASIC3.82□□□□□ -1.8
SKA1Q96BD8 MIR34B-201ENST00000385076 84 ntBASIC3.82□□□□□ -1.8
SKA1Q96BD8 AL391417.1-201ENST00000404100 426 ntBASIC3.82□□□□□ -1.8
SKA1Q96BD8 SPA17P1-201ENST00000416656 452 ntBASIC3.82□□□□□ -1.8
SKA1Q96BD8 DNAJA1P2-201ENST00000421360 1197 ntBASIC3.82□□□□□ -1.8
SKA1Q96BD8 RPL21P40-201ENST00000428586 483 ntBASIC3.82□□□□□ -1.8
SKA1Q96BD8 IGKV1OR9-2-201ENST00000431378 277 ntBASIC3.82□□□□□ -1.8
SKA1Q96BD8 LINC01867-201ENST00000435357 604 ntTSL 2 BASIC3.82□□□□□ -1.8
Retrieved 100 of 98,524 protein–RNA pairs in 111.5 ms