Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 RPL12P25-202ENST00000598100 674 ntBASIC3.31□□□□□ -1.88
HOXA1P49639 AC121334.2-201ENST00000605387 271 ntBASIC3.31□□□□□ -1.88
HOXA1P49639 AC092954.2-201ENST00000609103 430 ntBASIC3.31□□□□□ -1.88
HOXA1P49639 BX323046.1-201ENST00000610145 535 ntBASIC3.31□□□□□ -1.88
HOXA1P49639 Mico1.1-201ENST00000611698 204 ntBASIC3.31□□□□□ -1.88
HOXA1P49639 MALAT1-206ENST00000612781 234 ntTSL 3 BASIC3.31□□□□□ -1.88
HOXA1P49639 AC072046.2-201ENST00000618366 268 ntBASIC3.31□□□□□ -1.88
HOXA1P49639 PLCE1P1-201ENST00000622094 305 ntBASIC3.31□□□□□ -1.88
HOXA1P49639 CR381572.1-201ENST00000625098 102 ntBASIC3.31□□□□□ -1.88
HOXA1P49639 AL589740.1-204ENST00000634677 630 ntTSL 4 BASIC3.31□□□□□ -1.88
HOXA1P49639 MIR6863-201ENST00000636112 90 ntBASIC3.31□□□□□ -1.88
HOXA1P49639 KIAA0586-209ENST00000556134 5912 ntAPPRIS ALT2 TSL 5 BASIC3.31□□□□□ -1.88
HOXA1P49639 KIAA0586-215ENST00000619722 5597 ntAPPRIS ALT2 TSL 2 BASIC3.31□□□□□ -1.88
HOXA1P49639 AL079305.1-201ENST00000623159 3008 ntBASIC3.31□□□□□ -1.88
HOXA1P49639 CEP170P1-201ENST00000502249 4587 ntBASIC3.31□□□□□ -1.88
HOXA1P49639 ISPD-AS1-202ENST00000438573 2252 ntTSL 1 (best) BASIC3.31□□□□□ -1.88
HOXA1P49639 CHORDC1-206ENST00000529987 1698 ntTSL 3 BASIC3.3□□□□□ -1.88
HOXA1P49639 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
HOXA1P49639 NAIP-205ENST00000508426 4153 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
HOXA1P49639 NEB-201ENST00000172853 20634 ntAPPRIS ALT2 TSL 1 (best) BASIC3.3□□□□□ -1.88
HOXA1P49639 IPO8P1-201ENST00000455509 3109 ntBASIC3.3□□□□□ -1.88
HOXA1P49639 PARP15-206ENST00000493645 1311 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
HOXA1P49639 AC009902.3-201ENST00000606235 2172 ntBASIC3.3□□□□□ -1.88
HOXA1P49639 OR5B3-201ENST00000309403 945 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
HOXA1P49639 HSFY1-202ENST00000309834 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC3.3□□□□□ -1.88
HOXA1P49639 HSFY2-202ENST00000344884 1038 ntAPPRIS ALT2 TSL 1 (best) BASIC3.3□□□□□ -1.88
HOXA1P49639 QKI-202ENST00000361195 1063 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
HOXA1P49639 RNU6-359P-201ENST00000365466 108 ntBASIC3.3□□□□□ -1.88
HOXA1P49639 CRP-202ENST00000368110 667 ntTSL 3 BASIC3.3□□□□□ -1.88
HOXA1P49639 Y_RNA.409-201ENST00000383990 98 ntBASIC3.3□□□□□ -1.88
HOXA1P49639 MIR19A-201ENST00000384878 82 ntBASIC3.3□□□□□ -1.88
HOXA1P49639 AL049693.1-201ENST00000402760 611 ntBASIC3.3□□□□□ -1.88
HOXA1P49639 MIR1251-201ENST00000408552 70 ntBASIC3.3□□□□□ -1.88
HOXA1P49639 SSXP9-201ENST00000417503 292 ntBASIC3.3□□□□□ -1.88
HOXA1P49639 AC083900.1-201ENST00000421964 469 ntTSL 2 BASIC3.3□□□□□ -1.88
HOXA1P49639 RPL21P109-201ENST00000422213 475 ntBASIC3.3□□□□□ -1.88
HOXA1P49639 MTCO3P30-201ENST00000426425 670 ntBASIC3.3□□□□□ -1.88
HOXA1P49639 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC3.3□□□□□ -1.88
HOXA1P49639 AC092598.1-201ENST00000431708 797 ntTSL 3 BASIC3.3□□□□□ -1.88
HOXA1P49639 AC016292.1-201ENST00000438344 235 ntTSL 3 BASIC3.3□□□□□ -1.88
HOXA1P49639 MTATP6P13-201ENST00000438531 667 ntBASIC3.3□□□□□ -1.88
HOXA1P49639 AC018731.1-201ENST00000447078 576 ntTSL 4 BASIC3.3□□□□□ -1.88
HOXA1P49639 AP000477.2-201ENST00000447405 778 ntTSL 3 BASIC3.3□□□□□ -1.88
HOXA1P49639 PCCA-AS1-203ENST00000455958 356 ntTSL 3 BASIC3.3□□□□□ -1.88
HOXA1P49639 AL390730.1-201ENST00000457106 692 ntTSL 2 BASIC3.3□□□□□ -1.88
HOXA1P49639 AL139099.1-201ENST00000497398 403 ntBASIC3.3□□□□□ -1.88
HOXA1P49639 C4orf33-204ENST00000502887 1126 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
HOXA1P49639 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC3.3□□□□□ -1.88
HOXA1P49639 AC105343.1-201ENST00000505586 358 ntTSL 3 BASIC3.3□□□□□ -1.88
HOXA1P49639 AC108078.1-201ENST00000508073 725 ntBASIC3.3□□□□□ -1.88
HOXA1P49639 AC011352.1-201ENST00000512300 793 ntBASIC3.3□□□□□ -1.88
HOXA1P49639 RNU4-60P-201ENST00000517239 135 ntBASIC3.3□□□□□ -1.88
HOXA1P49639 RN7SKP92-201ENST00000517266 244 ntBASIC3.3□□□□□ -1.88
HOXA1P49639 CDH12P4-201ENST00000517835 295 ntBASIC3.3□□□□□ -1.88
HOXA1P49639 CDH12P3-201ENST00000517935 295 ntBASIC3.3□□□□□ -1.88
HOXA1P49639 CDH12P1-201ENST00000518435 295 ntBASIC3.3□□□□□ -1.88
HOXA1P49639 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC3.3□□□□□ -1.88
HOXA1P49639 AP002768.1-201ENST00000526741 320 ntTSL 3 BASIC3.3□□□□□ -1.88
HOXA1P49639 FAM92A1P1-201ENST00000528023 890 ntBASIC3.3□□□□□ -1.88
HOXA1P49639 AC113192.5-201ENST00000528779 486 ntTSL 2 BASIC3.3□□□□□ -1.88
HOXA1P49639 CR383656.7-201ENST00000548164 174 ntBASIC3.3□□□□□ -1.88
HOXA1P49639 CR383656.11-201ENST00000552261 498 ntTSL 3 BASIC3.3□□□□□ -1.88
HOXA1P49639 AC125603.1-201ENST00000552718 366 ntTSL 3 BASIC3.3□□□□□ -1.88
HOXA1P49639 AL359233.1-201ENST00000554029 364 ntTSL 3 BASIC3.3□□□□□ -1.88
HOXA1P49639 AC006960.3-201ENST00000561845 705 ntBASIC3.3□□□□□ -1.88
HOXA1P49639 AC010547.2-201ENST00000568523 409 ntTSL 5 BASIC3.3□□□□□ -1.88
HOXA1P49639 AC006270.2-201ENST00000578523 652 ntBASIC3.3□□□□□ -1.88
HOXA1P49639 AC007448.1-201ENST00000582714 234 ntBASIC3.3□□□□□ -1.88
HOXA1P49639 AL157938.2-204ENST00000589667 826 ntTSL 5 BASIC3.3□□□□□ -1.88
HOXA1P49639 PPP3CB-AS1-206ENST00000595935 675 ntTSL 5 BASIC3.3□□□□□ -1.88
HOXA1P49639 AC068790.3-201ENST00000602988 553 ntBASIC3.3□□□□□ -1.88
HOXA1P49639 XIAPP1-201ENST00000603162 600 ntBASIC3.3□□□□□ -1.88
HOXA1P49639 AC119501.1-201ENST00000603646 475 ntBASIC3.3□□□□□ -1.88
HOXA1P49639 AL136363.1-201ENST00000605349 337 ntBASIC3.3□□□□□ -1.88
HOXA1P49639 MIR98-201ENST00000606724 119 ntBASIC3.3□□□□□ -1.88
HOXA1P49639 AL161734.1-201ENST00000609720 557 ntBASIC3.3□□□□□ -1.88
HOXA1P49639 FAM27D1-201ENST00000612308 341 ntBASIC3.3□□□□□ -1.88
HOXA1P49639 U73479.1-201ENST00000618062 168 ntBASIC3.3□□□□□ -1.88
HOXA1P49639 AC136475.10-201ENST00000620253 385 ntBASIC3.3□□□□□ -1.88
HOXA1P49639 AC002550.2-201ENST00000621246 394 ntBASIC3.3□□□□□ -1.88
HOXA1P49639 AC091905.1-201ENST00000624400 311 ntBASIC3.3□□□□□ -1.88
HOXA1P49639 OR5B3-202ENST00000641865 1046 ntAPPRIS P1 BASIC3.3□□□□□ -1.88
HOXA1P49639 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC3.3□□□□□ -1.88
HOXA1P49639 LINC01111-201ENST00000518732 1663 ntTSL 1 (best) BASIC3.3□□□□□ -1.88
HOXA1P49639 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC3.3□□□□□ -1.88
HOXA1P49639 AL158163.1-201ENST00000603915 1649 ntBASIC3.3□□□□□ -1.88
HOXA1P49639 ZNF705A-201ENST00000359286 3455 ntAPPRIS P1 TSL 2 BASIC3.29□□□□□ -1.88
HOXA1P49639 SNORA37-201ENST00000384504 129 ntBASIC3.29□□□□□ -1.88
HOXA1P49639 MIR129-1-201ENST00000384972 72 ntBASIC3.29□□□□□ -1.88
HOXA1P49639 TRAJ32-201ENST00000390505 66 ntAPPRIS P1 BASIC3.29□□□□□ -1.88
HOXA1P49639 RPL17P50-201ENST00000396131 546 ntBASIC3.29□□□□□ -1.88
HOXA1P49639 CALM2P3-201ENST00000400429 449 ntBASIC3.29□□□□□ -1.88
HOXA1P49639 MRPL42P2-201ENST00000403169 426 ntBASIC3.29□□□□□ -1.88
HOXA1P49639 GSTA9P-201ENST00000406231 611 ntBASIC3.29□□□□□ -1.88
HOXA1P49639 RNU6-712P-201ENST00000410558 100 ntBASIC3.29□□□□□ -1.88
HOXA1P49639 AC004014.1-201ENST00000413406 538 ntTSL 4 BASIC3.29□□□□□ -1.88
HOXA1P49639 SLC8A1-AS1-201ENST00000413479 800 ntTSL 5 BASIC3.29□□□□□ -1.88
HOXA1P49639 MTND1P23-201ENST00000416931 372 ntBASIC3.29□□□□□ -1.88
HOXA1P49639 OR1AA1P-201ENST00000419597 916 ntBASIC3.29□□□□□ -1.88
HOXA1P49639 AC069157.1-201ENST00000421749 137 ntBASIC3.29□□□□□ -1.88
Retrieved 100 of 98,524 protein–RNA pairs in 78.8 ms