Protein–RNA interactions for Protein: P28370

SMARCA1, Probable global transcription activator SNF2L1, humanhuman

Predictions only

Length 1,054 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA1P28370 CCNH-206ENST00000508855 2391 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
SMARCA1P28370 LINC02232-201ENST00000509932 4079 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
SMARCA1P28370 Y_RNA.248-201ENST00000364501 109 ntBASIC4.49□□□□□ -1.69
SMARCA1P28370 RNU6-1283P-201ENST00000365314 105 ntBASIC4.49□□□□□ -1.69
SMARCA1P28370 MIR181A1-201ENST00000385026 110 ntBASIC4.49□□□□□ -1.69
SMARCA1P28370 RNU4-78P-201ENST00000410940 126 ntBASIC4.49□□□□□ -1.69
SMARCA1P28370 AC245052.5-201ENST00000416320 649 ntBASIC4.49□□□□□ -1.69
SMARCA1P28370 PIGFP2-201ENST00000421400 651 ntBASIC4.49□□□□□ -1.69
SMARCA1P28370 RPL31P35-201ENST00000431058 377 ntBASIC4.49□□□□□ -1.69
SMARCA1P28370 MRPS18BP2-201ENST00000434310 759 ntBASIC4.49□□□□□ -1.69
SMARCA1P28370 AC078993.1-203ENST00000435789 1037 ntTSL 5 BASIC4.49□□□□□ -1.69
SMARCA1P28370 AC104850.1-201ENST00000435940 476 ntBASIC4.49□□□□□ -1.69
SMARCA1P28370 AC108734.1-201ENST00000439549 399 ntBASIC4.49□□□□□ -1.69
SMARCA1P28370 AC112653.1-201ENST00000443851 386 ntBASIC4.49□□□□□ -1.69
SMARCA1P28370 RANP8-201ENST00000444720 713 ntBASIC4.49□□□□□ -1.69
SMARCA1P28370 Z95327.1-201ENST00000446082 482 ntBASIC4.49□□□□□ -1.69
SMARCA1P28370 RPS17P13-201ENST00000448974 407 ntBASIC4.49□□□□□ -1.69
SMARCA1P28370 PSPHP1-201ENST00000450062 261 ntBASIC4.49□□□□□ -1.69
SMARCA1P28370 LINC01005-202ENST00000451440 531 ntTSL 4 BASIC4.49□□□□□ -1.69
SMARCA1P28370 NPM1P41-201ENST00000512920 831 ntBASIC4.49□□□□□ -1.69
SMARCA1P28370 AC107934.1-201ENST00000522215 217 ntBASIC4.49□□□□□ -1.69
SMARCA1P28370 AC090539.1-201ENST00000523907 434 ntTSL 3 BASIC4.49□□□□□ -1.69
SMARCA1P28370 AC090092.1-201ENST00000530576 510 ntTSL 2 BASIC4.49□□□□□ -1.69
SMARCA1P28370 AC084819.1-201ENST00000537293 424 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
SMARCA1P28370 AL359233.1-201ENST00000554029 364 ntTSL 3 BASIC4.49□□□□□ -1.69
SMARCA1P28370 AL358335.2-201ENST00000555693 487 ntTSL 3 BASIC4.49□□□□□ -1.69
SMARCA1P28370 CHEK2P2-203ENST00000566448 670 ntTSL 5 BASIC4.49□□□□□ -1.69
SMARCA1P28370 NRBF2P1-201ENST00000587407 859 ntBASIC4.49□□□□□ -1.69
SMARCA1P28370 AL606834.2-201ENST00000602954 668 ntBASIC4.49□□□□□ -1.69
SMARCA1P28370 AP000860.1-201ENST00000605250 559 ntBASIC4.49□□□□□ -1.69
SMARCA1P28370 C8orf59-209ENST00000612977 586 ntAPPRIS P1 TSL 2 BASIC4.49□□□□□ -1.69
SMARCA1P28370 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC4.49□□□□□ -1.69
SMARCA1P28370 CCT7-217ENST00000626868 249 ntTSL 5 BASIC4.49□□□□□ -1.69
SMARCA1P28370 MIR6863-201ENST00000636112 90 ntBASIC4.49□□□□□ -1.69
SMARCA1P28370 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC4.49□□□□□ -1.69
SMARCA1P28370 MCF2-203ENST00000370576 3688 ntAPPRIS P3 TSL 1 (best) BASIC4.49□□□□□ -1.69
SMARCA1P28370 CCDC178-204ENST00000403303 3354 ntAPPRIS ALT2 TSL 1 (best) BASIC4.49□□□□□ -1.69
SMARCA1P28370 KIF2A-205ENST00000506857 2219 ntTSL 2 BASIC4.49□□□□□ -1.69
SMARCA1P28370 POSTN-202ENST00000379743 3196 ntTSL 1 (best) BASIC4.49□□□□□ -1.69
SMARCA1P28370 THEMIS-205ENST00000626040 3179 ntAPPRIS ALT2 TSL 2 BASIC4.49□□□□□ -1.69
SMARCA1P28370 NPFFR2-203ENST00000358749 1559 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
SMARCA1P28370 CCDC146-201ENST00000285871 3333 ntAPPRIS P2 TSL 1 (best) BASIC4.48□□□□□ -1.69
SMARCA1P28370 RNU5E-1-201ENST00000362477 120 ntBASIC4.48□□□□□ -1.69
SMARCA1P28370 SNORD51-201ENST00000384320 80 ntBASIC4.48□□□□□ -1.69
SMARCA1P28370 CBLL1-202ENST00000415884 804 ntTSL 5 BASIC4.48□□□□□ -1.69
SMARCA1P28370 LINC01780-201ENST00000420059 442 ntTSL 2 BASIC4.48□□□□□ -1.69
SMARCA1P28370 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC4.48□□□□□ -1.69
SMARCA1P28370 TEX41-204ENST00000423031 491 ntTSL 4 BASIC4.48□□□□□ -1.69
SMARCA1P28370 USP9YP18-201ENST00000425912 695 ntBASIC4.48□□□□□ -1.69
SMARCA1P28370 AL590378.1-201ENST00000426818 303 ntTSL 3 BASIC4.48□□□□□ -1.69
SMARCA1P28370 AL080248.1-201ENST00000428954 388 ntTSL 3 BASIC4.48□□□□□ -1.69
SMARCA1P28370 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC4.48□□□□□ -1.69
SMARCA1P28370 ARPC3P1-201ENST00000437218 533 ntBASIC4.48□□□□□ -1.69
SMARCA1P28370 RBMX2P4-201ENST00000441256 376 ntBASIC4.48□□□□□ -1.69
SMARCA1P28370 AC007879.3-202ENST00000448786 823 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
SMARCA1P28370 HMGB1P25-201ENST00000468402 607 ntBASIC4.48□□□□□ -1.69
SMARCA1P28370 AL121769.1-201ENST00000469473 401 ntBASIC4.48□□□□□ -1.69
SMARCA1P28370 C1orf112-206ENST00000472795 925 ntAPPRIS ALT2 TSL 2 BASIC4.48□□□□□ -1.69
SMARCA1P28370 RPS3AP14-201ENST00000483907 780 ntBASIC4.48□□□□□ -1.69
SMARCA1P28370 AC055855.1-201ENST00000489563 579 ntBASIC4.48□□□□□ -1.69
SMARCA1P28370 AC106872.2-201ENST00000494303 480 ntBASIC4.48□□□□□ -1.69
SMARCA1P28370 RN7SL323P-201ENST00000494712 295 ntBASIC4.48□□□□□ -1.69
SMARCA1P28370 AL139099.1-201ENST00000497398 403 ntBASIC4.48□□□□□ -1.69
SMARCA1P28370 SMAD1-AS2-201ENST00000508936 1090 ntTSL 1 (best) BASIC4.48□□□□□ -1.69
SMARCA1P28370 LINC02174-201ENST00000508977 553 ntTSL 3 BASIC4.48□□□□□ -1.69
SMARCA1P28370 AL358937.1-201ENST00000524512 336 ntTSL 2 BASIC4.48□□□□□ -1.69
SMARCA1P28370 OR4P1P-201ENST00000530808 1136 ntBASIC4.48□□□□□ -1.69
SMARCA1P28370 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC4.48□□□□□ -1.69
SMARCA1P28370 AC106785.1-201ENST00000565935 262 ntBASIC4.48□□□□□ -1.69
SMARCA1P28370 AP005059.2-201ENST00000577527 578 ntTSL 3 BASIC4.48□□□□□ -1.69
SMARCA1P28370 AC060771.1-201ENST00000582031 164 ntBASIC4.48□□□□□ -1.69
SMARCA1P28370 AC055876.5-201ENST00000605667 259 ntBASIC4.48□□□□□ -1.69
SMARCA1P28370 AC090970.3-201ENST00000612566 866 ntBASIC4.48□□□□□ -1.69
SMARCA1P28370 AL592295.2-201ENST00000612578 206 ntBASIC4.48□□□□□ -1.69
SMARCA1P28370 AC233309.1-201ENST00000619522 751 ntBASIC4.48□□□□□ -1.69
SMARCA1P28370 FP236240.3-201ENST00000623061 327 ntBASIC4.48□□□□□ -1.69
SMARCA1P28370 NANOGNB-202ENST00000640040 824 ntAPPRIS ALT2 TSL 5 BASIC4.48□□□□□ -1.69
SMARCA1P28370 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC4.48□□□□□ -1.69
SMARCA1P28370 AC024560.2-201ENST00000507981 1497 ntBASIC4.48□□□□□ -1.69
SMARCA1P28370 CCDC14-217ENST00000485727 7917 ntAPPRIS ALT2 TSL 1 (best) BASIC4.48□□□□□ -1.69
SMARCA1P28370 FAT3-204ENST00000525166 18699 ntTSL 5 BASIC4.48□□□□□ -1.69
SMARCA1P28370 CLHC1-201ENST00000401408 2248 ntAPPRIS P1 TSL 1 (best) BASIC4.48□□□□□ -1.69
SMARCA1P28370 RPS4Y1-201ENST00000250784 1305 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
SMARCA1P28370 RAPGEF6-201ENST00000296859 5618 ntAPPRIS ALT2 TSL 1 (best) BASIC4.47□□□□□ -1.69
SMARCA1P28370 KCNJ16-201ENST00000283936 4062 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
SMARCA1P28370 DENND2C-203ENST00000393277 4730 ntTSL 5 BASIC4.47□□□□□ -1.69
SMARCA1P28370 RAD21-210ENST00000523986 2506 ntTSL 2 BASIC4.47□□□□□ -1.69
SMARCA1P28370 CNGA1-201ENST00000358519 2627 ntAPPRIS P3 TSL 1 (best) BASIC4.47□□□□□ -1.69
SMARCA1P28370 MLIP-AS1-201ENST00000434196 1534 ntTSL 2 BASIC4.47□□□□□ -1.69
SMARCA1P28370 AMY2A-201ENST00000414303 1634 ntAPPRIS P1 TSL 1 (best) BASIC4.47□□□□□ -1.69
SMARCA1P28370 OR5J2-201ENST00000312298 939 ntAPPRIS P1 BASIC4.47□□□□□ -1.69
SMARCA1P28370 OR6C70-201ENST00000327335 939 ntAPPRIS P1 BASIC4.47□□□□□ -1.69
SMARCA1P28370 RNU4-1-201ENST00000363925 141 ntBASIC4.47□□□□□ -1.69
SMARCA1P28370 MIR23A-201ENST00000385245 73 ntBASIC4.47□□□□□ -1.69
SMARCA1P28370 TRAJ18-201ENST00000390519 66 ntAPPRIS P1 BASIC4.47□□□□□ -1.69
SMARCA1P28370 U3.20-201ENST00000390909 217 ntBASIC4.47□□□□□ -1.69
SMARCA1P28370 RPL23AP32-201ENST00000395315 459 ntBASIC4.47□□□□□ -1.69
SMARCA1P28370 CALM2P3-201ENST00000400429 449 ntBASIC4.47□□□□□ -1.69
SMARCA1P28370 BTF3P7-201ENST00000407097 488 ntBASIC4.47□□□□□ -1.69
SMARCA1P28370 SNORA11-201ENST00000408789 128 ntBASIC4.47□□□□□ -1.69
Retrieved 100 of 98,524 protein–RNA pairs in 99.9 ms