Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 AL391219.1-201ENST00000422570 483 ntBASIC5.3□□□□□ -1.56
MSX1P28360 MTND3P9-201ENST00000429526 346 ntBASIC5.3□□□□□ -1.56
MSX1P28360 AC092573.2-201ENST00000434546 243 ntBASIC5.3□□□□□ -1.56
MSX1P28360 BX276092.4-201ENST00000452056 248 ntBASIC5.3□□□□□ -1.56
MSX1P28360 RNU6-1037P-201ENST00000459571 107 ntBASIC5.3□□□□□ -1.56
MSX1P28360 RPS27AP13-201ENST00000498403 237 ntBASIC5.3□□□□□ -1.56
MSX1P28360 RNU6-914P-201ENST00000516749 109 ntBASIC5.3□□□□□ -1.56
MSX1P28360 AC093023.1-201ENST00000547375 507 ntBASIC5.3□□□□□ -1.56
MSX1P28360 AC004024.1-201ENST00000549244 247 ntBASIC5.3□□□□□ -1.56
MSX1P28360 AC126615.2-201ENST00000553003 515 ntBASIC5.3□□□□□ -1.56
MSX1P28360 OR4H12P-201ENST00000556269 907 ntBASIC5.3□□□□□ -1.56
MSX1P28360 AC136932.1-201ENST00000574771 208 ntBASIC5.3□□□□□ -1.56
MSX1P28360 MIR4643-201ENST00000577473 78 ntBASIC5.3□□□□□ -1.56
MSX1P28360 MIR548AC-201ENST00000585049 88 ntBASIC5.3□□□□□ -1.56
MSX1P28360 AC097467.3-205ENST00000597955 594 ntTSL 5 BASIC5.3□□□□□ -1.56
MSX1P28360 MACROD2-IT1-202ENST00000605675 575 ntTSL 5 BASIC5.3□□□□□ -1.56
MSX1P28360 AC116447.1-201ENST00000613153 453 ntBASIC5.3□□□□□ -1.56
MSX1P28360 AC079776.5-201ENST00000641920 211 ntBASIC5.3□□□□□ -1.56
MSX1P28360 SELL-201ENST00000236147 2436 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
MSX1P28360 RYR3-208ENST00000622037 15564 ntAPPRIS ALT2 TSL 5 BASIC5.3□□□□□ -1.56
MSX1P28360 MTM1-203ENST00000370396 3593 ntAPPRIS P1 TSL 1 (best) BASIC5.3□□□□□ -1.56
MSX1P28360 AP001148.1-201ENST00000624124 2359 ntBASIC5.3□□□□□ -1.56
MSX1P28360 IPCEF1-202ENST00000367220 1658 ntAPPRIS ALT2 TSL 2 BASIC5.3□□□□□ -1.56
MSX1P28360 AC138409.2-201ENST00000514048 5001 ntTSL 5 BASIC5.3□□□□□ -1.56
MSX1P28360 AC009643.2-201ENST00000603543 1448 ntBASIC5.3□□□□□ -1.56
MSX1P28360 LINC00309-201ENST00000431020 3307 ntTSL 1 (best) BASIC5.3□□□□□ -1.56
MSX1P28360 WDR64-201ENST00000366552 4371 ntAPPRIS P1 TSL 5 BASIC5.3□□□□□ -1.56
MSX1P28360 DCAF8L1-201ENST00000441525 3457 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
MSX1P28360 UGT2A1-206ENST00000514019 2376 ntTSL 2 BASIC5.29□□□□□ -1.56
MSX1P28360 CTTNBP2NL-201ENST00000271277 5897 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
MSX1P28360 ETV1-207ENST00000405358 4181 ntTSL 5 BASIC5.29□□□□□ -1.56
MSX1P28360 ERBIN-208ENST00000506030 4386 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
MSX1P28360 CPS1-IT1-201ENST00000628368 2306 ntBASIC5.29□□□□□ -1.56
MSX1P28360 MAGI2-205ENST00000519748 3316 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
MSX1P28360 CCDC62-205ENST00000537566 3537 ntAPPRIS ALT2 TSL 2 BASIC5.29□□□□□ -1.56
MSX1P28360 LINC02227-201ENST00000619068 3748 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
MSX1P28360 KIAA1841-205ENST00000453873 4294 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
MSX1P28360 OR5K1-202ENST00000642057 3466 ntAPPRIS P1 BASIC5.29□□□□□ -1.56
MSX1P28360 YPEL5-202ENST00000379519 2499 ntAPPRIS P1 TSL 2 BASIC5.29□□□□□ -1.56
MSX1P28360 ZBTB25-201ENST00000394715 2094 ntAPPRIS P1 TSL 2 BASIC5.29□□□□□ -1.56
MSX1P28360 RAPH1-209ENST00000439222 1854 ntAPPRIS ALT2 TSL 5 BASIC5.29□□□□□ -1.56
MSX1P28360 CHM-201ENST00000357749 5442 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
MSX1P28360 RN7SKP160-201ENST00000363804 340 ntBASIC5.29□□□□□ -1.56
MSX1P28360 CRP-202ENST00000368110 667 ntTSL 3 BASIC5.29□□□□□ -1.56
MSX1P28360 C1orf54-201ENST00000369098 418 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
MSX1P28360 AL080315.1-201ENST00000406055 466 ntBASIC5.29□□□□□ -1.56
MSX1P28360 AL353621.1-201ENST00000418219 243 ntBASIC5.29□□□□□ -1.56
MSX1P28360 AC138024.1-201ENST00000420867 699 ntTSL 3 BASIC5.29□□□□□ -1.56
MSX1P28360 AC007271.1-201ENST00000428188 382 ntTSL 3 BASIC5.29□□□□□ -1.56
MSX1P28360 AC091286.1-201ENST00000431233 461 ntBASIC5.29□□□□□ -1.56
MSX1P28360 AC004866.2-201ENST00000438285 481 ntBASIC5.29□□□□□ -1.56
MSX1P28360 KRT8P51-201ENST00000438938 274 ntBASIC5.29□□□□□ -1.56
MSX1P28360 AC017074.2-201ENST00000439382 607 ntTSL 2 BASIC5.29□□□□□ -1.56
MSX1P28360 AL163193.1-201ENST00000444895 788 ntBASIC5.29□□□□□ -1.56
MSX1P28360 DARS-AS1-206ENST00000446492 488 ntTSL 3 BASIC5.29□□□□□ -1.56
MSX1P28360 PRDX3P3-201ENST00000447765 522 ntBASIC5.29□□□□□ -1.56
MSX1P28360 AC006482.1-201ENST00000448898 273 ntTSL 3 BASIC5.29□□□□□ -1.56
MSX1P28360 GAS5-221ENST00000450589 632 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
MSX1P28360 RPS29P26-201ENST00000477483 171 ntBASIC5.29□□□□□ -1.56
MSX1P28360 RN7SL570P-201ENST00000484405 292 ntBASIC5.29□□□□□ -1.56
MSX1P28360 RPL30P10-201ENST00000488148 337 ntBASIC5.29□□□□□ -1.56
MSX1P28360 AC010469.2-201ENST00000496412 480 ntBASIC5.29□□□□□ -1.56
MSX1P28360 IGLV2-28-201ENST00000520681 304 ntBASIC5.29□□□□□ -1.56
MSX1P28360 AC024405.2-202ENST00000532731 184 ntBASIC5.29□□□□□ -1.56
MSX1P28360 FKBP1BP1-201ENST00000553366 325 ntBASIC5.29□□□□□ -1.56
MSX1P28360 MIR1273E-201ENST00000581165 102 ntBASIC5.29□□□□□ -1.56
MSX1P28360 AC004832.4-201ENST00000608952 331 ntBASIC5.29□□□□□ -1.56
MSX1P28360 NADK2-211ENST00000617628 744 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
MSX1P28360 AL691477.1-201ENST00000624398 162 ntBASIC5.29□□□□□ -1.56
MSX1P28360 LINC00506-201ENST00000628435 525 ntTSL 4 BASIC5.29□□□□□ -1.56
MSX1P28360 LINC00598-206ENST00000615947 3541 ntTSL 4 BASIC5.29□□□□□ -1.56
MSX1P28360 SAMD9L-204ENST00000437805 5757 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
MSX1P28360 EBAG9-210ENST00000620557 2186 ntAPPRIS P1 TSL 3 BASIC5.29□□□□□ -1.56
MSX1P28360 ZNF285B-201ENST00000561698 1767 ntBASIC5.29□□□□□ -1.56
MSX1P28360 SLFN13-201ENST00000285013 8469 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
MSX1P28360 ASAH2-204ENST00000447815 2311 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
MSX1P28360 AC007681.1-201ENST00000604271 3438 ntTSL 4 BASIC5.29□□□□□ -1.56
MSX1P28360 CSMD1-215ENST00000537824 13512 ntAPPRIS ALT2 TSL 5 BASIC5.29□□□□□ -1.56
MSX1P28360 ALS2CR12-202ENST00000392257 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC5.29□□□□□ -1.56
MSX1P28360 TMEM68-218ENST00000617782 2477 ntAPPRIS P1 TSL 5 BASIC5.29□□□□□ -1.56
MSX1P28360 CYP3A43-204ENST00000354829 1709 ntAPPRIS ALT1 TSL 1 (best) BASIC5.28□□□□□ -1.56
MSX1P28360 ZCCHC7-202ENST00000336755 2619 ntAPPRIS P1 TSL 2 BASIC5.28□□□□□ -1.56
MSX1P28360 ZNF383-201ENST00000352998 6760 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
MSX1P28360 KCNH5-201ENST00000322893 11290 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
MSX1P28360 ARID2-202ENST00000422737 5481 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
MSX1P28360 AP4S1-212ENST00000622409 4113 ntAPPRIS P1 TSL 3 BASIC5.28□□□□□ -1.56
MSX1P28360 OTUD4-202ENST00000454497 7069 ntTSL 2 BASIC5.28□□□□□ -1.56
MSX1P28360 FRAS1-207ENST00000512123 15624 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
MSX1P28360 RYR3-202ENST00000415757 15557 ntAPPRIS ALT2 TSL 2 BASIC5.28□□□□□ -1.56
MSX1P28360 ZNF615-201ENST00000376716 4048 ntAPPRIS P3 TSL 2 BASIC5.28□□□□□ -1.56
MSX1P28360 USF3-202ENST00000478658 8461 ntAPPRIS P2 TSL 5 BASIC5.28□□□□□ -1.56
MSX1P28360 CAB39L-206ENST00000410043 1627 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
MSX1P28360 RNA5SP500-201ENST00000364486 119 ntBASIC5.28□□□□□ -1.56
MSX1P28360 RNA5SP132-201ENST00000364725 118 ntBASIC5.28□□□□□ -1.56
MSX1P28360 U3.13-201ENST00000364804 214 ntBASIC5.28□□□□□ -1.56
MSX1P28360 MIR135A2-201ENST00000384854 100 ntBASIC5.28□□□□□ -1.56
MSX1P28360 MS4A4E-201ENST00000398984 479 ntTSL 5 BASIC5.28□□□□□ -1.56
MSX1P28360 RNA5SP494-201ENST00000410653 129 ntBASIC5.28□□□□□ -1.56
MSX1P28360 COX6CP10-201ENST00000416832 224 ntBASIC5.28□□□□□ -1.56
MSX1P28360 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
Retrieved 100 of 98,524 protein–RNA pairs in 110.1 ms