Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC6.14□□□□□ -1.43
COL9A1P20849 AC025437.5-201ENST00000522769 314 ntTSL 3 BASIC6.14□□□□□ -1.43
COL9A1P20849 MIR3189-201ENST00000578735 73 ntBASIC6.14□□□□□ -1.43
COL9A1P20849 AC023575.1-201ENST00000580510 358 ntBASIC6.14□□□□□ -1.43
COL9A1P20849 AC023043.4-201ENST00000612081 449 ntBASIC6.14□□□□□ -1.43
COL9A1P20849 CSDE1-201ENST00000261443 3228 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
COL9A1P20849 MTMR7-201ENST00000180173 3850 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
COL9A1P20849 CUL2-201ENST00000374746 3903 ntTSL 5 BASIC6.14□□□□□ -1.43
COL9A1P20849 AC092111.1-201ENST00000618256 3358 ntBASIC6.14□□□□□ -1.43
COL9A1P20849 GAS2L3-202ENST00000537247 2742 ntTSL 2 BASIC6.14□□□□□ -1.43
COL9A1P20849 ATF7IP2-203ENST00000396559 3641 ntTSL 2 BASIC6.14□□□□□ -1.43
COL9A1P20849 SYCP1-209ENST00000613524 3034 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
COL9A1P20849 ZFHX4-204ENST00000518282 12175 ntAPPRIS ALT2 TSL 5 BASIC6.14□□□□□ -1.43
COL9A1P20849 POLQ-204ENST00000621776 9055 ntTSL 5 BASIC6.14□□□□□ -1.43
COL9A1P20849 CPNE4-208ENST00000511604 2503 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
COL9A1P20849 ZC3H11A-204ENST00000367214 3451 ntAPPRIS P1 TSL 2 BASIC6.13□□□□□ -1.43
COL9A1P20849 AL591848.4-201ENST00000567832 3472 ntBASIC6.13□□□□□ -1.43
COL9A1P20849 YWHAZ-201ENST00000353245 2829 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
COL9A1P20849 OR8H2-201ENST00000313503 3088 ntAPPRIS P2 BASIC6.13□□□□□ -1.43
COL9A1P20849 AL451142.2-201ENST00000429076 2090 ntBASIC6.13□□□□□ -1.43
COL9A1P20849 MUSK-206ENST00000416899 3344 ntTSL 5 BASIC6.13□□□□□ -1.43
COL9A1P20849 DNAJC6-203ENST00000395325 5743 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
COL9A1P20849 NBPF11-202ENST00000614015 4630 ntAPPRIS P2 TSL 2 BASIC6.13□□□□□ -1.43
COL9A1P20849 IARS-202ENST00000375643 4656 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
COL9A1P20849 KMT2C-201ENST00000262189 16862 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
COL9A1P20849 KMT2C-202ENST00000355193 16858 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
COL9A1P20849 TMEM257-201ENST00000408967 2441 ntAPPRIS P1 BASIC6.13□□□□□ -1.43
COL9A1P20849 REST-201ENST00000309042 7300 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
COL9A1P20849 PRDM2-202ENST00000311066 7437 ntAPPRIS ALT2 TSL 5 BASIC6.13□□□□□ -1.43
COL9A1P20849 MIR412-201ENST00000362142 91 ntBASIC6.13□□□□□ -1.43
COL9A1P20849 RNU6-989P-201ENST00000362756 107 ntBASIC6.13□□□□□ -1.43
COL9A1P20849 Y_RNA.121-201ENST00000363309 113 ntBASIC6.13□□□□□ -1.43
COL9A1P20849 DEFB136-201ENST00000382209 237 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
COL9A1P20849 Y_RNA.570-201ENST00000384750 101 ntBASIC6.13□□□□□ -1.43
COL9A1P20849 RNU2-43P-201ENST00000410306 190 ntBASIC6.13□□□□□ -1.43
COL9A1P20849 MTND4LP9-201ENST00000427694 174 ntBASIC6.13□□□□□ -1.43
COL9A1P20849 AC092164.1-202ENST00000428036 486 ntTSL 3 BASIC6.13□□□□□ -1.43
COL9A1P20849 HSPD1P21-201ENST00000436541 245 ntBASIC6.13□□□□□ -1.43
COL9A1P20849 SEPT7P4-201ENST00000437076 306 ntBASIC6.13□□□□□ -1.43
COL9A1P20849 LARGE-IT1-201ENST00000445391 558 ntTSL 4 BASIC6.13□□□□□ -1.43
COL9A1P20849 RPL7AP28-201ENST00000464513 571 ntBASIC6.13□□□□□ -1.43
COL9A1P20849 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC6.13□□□□□ -1.43
COL9A1P20849 HMGB3P16-201ENST00000508037 287 ntBASIC6.13□□□□□ -1.43
COL9A1P20849 AC011389.1-201ENST00000509170 594 ntTSL 4 BASIC6.13□□□□□ -1.43
COL9A1P20849 LINC02350-201ENST00000544419 480 ntTSL 3 BASIC6.13□□□□□ -1.43
COL9A1P20849 AC119044.1-202ENST00000548463 339 ntTSL 2 BASIC6.13□□□□□ -1.43
COL9A1P20849 LINC02327-203ENST00000550122 738 ntTSL 2 BASIC6.13□□□□□ -1.43
COL9A1P20849 THSD4-AS1-201ENST00000561571 554 ntTSL 5 BASIC6.13□□□□□ -1.43
COL9A1P20849 AC055872.1-201ENST00000570978 278 ntBASIC6.13□□□□□ -1.43
COL9A1P20849 AP001178.1-201ENST00000584679 268 ntTSL 3 BASIC6.13□□□□□ -1.43
COL9A1P20849 AC005046.1-201ENST00000608515 625 ntBASIC6.13□□□□□ -1.43
COL9A1P20849 AC073869.8-201ENST00000641806 335 ntBASIC6.13□□□□□ -1.43
COL9A1P20849 IBTK-210ENST00000610980 5195 ntTSL 5 BASIC6.13□□□□□ -1.43
COL9A1P20849 LGI1-212ENST00000630184 2936 ntTSL 2 BASIC6.13□□□□□ -1.43
COL9A1P20849 CX3CR1-201ENST00000358309 3151 ntTSL 2 BASIC6.13□□□□□ -1.43
COL9A1P20849 CACNA2D3-212ENST00000620722 3296 ntTSL 1 (best) BASIC6.13□□□□□ -1.43
COL9A1P20849 CKAP2-207ENST00000490903 3395 ntAPPRIS ALT2 TSL 2 BASIC6.13□□□□□ -1.43
COL9A1P20849 RIMS1-205ENST00000414192 1787 ntTSL 2 BASIC6.13□□□□□ -1.43
COL9A1P20849 DAZ4-207ENST00000634662 1832 ntAPPRIS ALT2 TSL 5 BASIC6.13□□□□□ -1.43
COL9A1P20849 RWDD2A-201ENST00000369724 3744 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
COL9A1P20849 UNC13B-210ENST00000636694 8012 ntTSL 5 BASIC6.13□□□□□ -1.43
COL9A1P20849 UNC13B-209ENST00000635942 14550 ntAPPRIS ALT2 TSL 5 BASIC6.13□□□□□ -1.43
COL9A1P20849 GRIP1-202ENST00000398016 4888 ntAPPRIS P1 TSL 1 (best) BASIC6.13□□□□□ -1.43
COL9A1P20849 RAD51B-210ENST00000487270 2596 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
COL9A1P20849 PTPRO-208ENST00000542557 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC6.12□□□□□ -1.43
COL9A1P20849 NCOR1-202ENST00000395848 3106 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
COL9A1P20849 GON4L-204ENST00000437809 7713 ntAPPRIS P3 TSL 5 BASIC6.12□□□□□ -1.43
COL9A1P20849 RPTN-201ENST00000316073 3569 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
COL9A1P20849 RNU6-222P-201ENST00000362438 107 ntBASIC6.12□□□□□ -1.43
COL9A1P20849 RNU6-1155P-201ENST00000363554 107 ntBASIC6.12□□□□□ -1.43
COL9A1P20849 Y_RNA.230-201ENST00000364348 109 ntBASIC6.12□□□□□ -1.43
COL9A1P20849 Y_RNA.238-201ENST00000364441 102 ntBASIC6.12□□□□□ -1.43
COL9A1P20849 RNU6-384P-201ENST00000364900 104 ntBASIC6.12□□□□□ -1.43
COL9A1P20849 SEL1L2-202ENST00000378072 1892 ntTSL 2 BASIC6.12□□□□□ -1.43
COL9A1P20849 RNU6-17P-201ENST00000384245 107 ntBASIC6.12□□□□□ -1.43
COL9A1P20849 RNU6-18P-201ENST00000384527 107 ntBASIC6.12□□□□□ -1.43
COL9A1P20849 RNU6-239P-201ENST00000390990 99 ntBASIC6.12□□□□□ -1.43
COL9A1P20849 ALS2CR12-202ENST00000392257 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC6.12□□□□□ -1.43
COL9A1P20849 MYBPC1-203ENST00000392934 3644 ntAPPRIS ALT2 TSL 2 BASIC6.12□□□□□ -1.43
COL9A1P20849 AFP-202ENST00000395792 2484 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
COL9A1P20849 TXNRD1-203ENST00000397736 3832 ntTSL 5 BASIC6.12□□□□□ -1.43
COL9A1P20849 SNORD12B-201ENST00000410433 91 ntBASIC6.12□□□□□ -1.43
COL9A1P20849 RPL30P13-201ENST00000418873 348 ntBASIC6.12□□□□□ -1.43
COL9A1P20849 AC093162.1-201ENST00000419682 124 ntBASIC6.12□□□□□ -1.43
COL9A1P20849 AL133173.1-201ENST00000423458 397 ntBASIC6.12□□□□□ -1.43
COL9A1P20849 PTGES3P4-201ENST00000426243 356 ntBASIC6.12□□□□□ -1.43
COL9A1P20849 KCNMB2-204ENST00000432997 2552 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
COL9A1P20849 GARNL3-205ENST00000435213 3599 ntTSL 2 BASIC6.12□□□□□ -1.43
COL9A1P20849 MRPL48P1-201ENST00000445390 636 ntBASIC6.12□□□□□ -1.43
COL9A1P20849 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC6.12□□□□□ -1.43
COL9A1P20849 PPP4R1L-209ENST00000497138 4680 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
COL9A1P20849 AC026402.1-201ENST00000513642 170 ntBASIC6.12□□□□□ -1.43
COL9A1P20849 RNU6-615P-201ENST00000516065 106 ntBASIC6.12□□□□□ -1.43
COL9A1P20849 NDST1-AS1-201ENST00000519040 368 ntTSL 2 BASIC6.12□□□□□ -1.43
COL9A1P20849 AC079098.1-202ENST00000523150 573 ntTSL 5 BASIC6.12□□□□□ -1.43
COL9A1P20849 AC008489.1-201ENST00000524271 483 ntBASIC6.12□□□□□ -1.43
COL9A1P20849 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC6.12□□□□□ -1.43
COL9A1P20849 CYCSP26-201ENST00000534107 320 ntBASIC6.12□□□□□ -1.43
COL9A1P20849 TAOK1-202ENST00000536202 4068 ntTSL 1 (best) BASIC6.12□□□□□ -1.43
COL9A1P20849 CERS3-203ENST00000538112 1856 ntAPPRIS P1 TSL 1 (best) BASIC6.12□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 112.8 ms