Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AL139118.1-201ENST00000432707 446 ntTSL 3 BASIC3.48□□□□□ -1.85
MSH3P20585 AC104653.2-201ENST00000435407 416 ntTSL 3 BASIC3.48□□□□□ -1.85
MSH3P20585 AL138916.1-201ENST00000436295 455 ntTSL 3 BASIC3.48□□□□□ -1.85
MSH3P20585 RSU1P2-202ENST00000437884 485 ntBASIC3.48□□□□□ -1.85
MSH3P20585 FAR2P1-203ENST00000440931 187 ntTSL 2 BASIC3.48□□□□□ -1.85
MSH3P20585 LINC01698-201ENST00000443636 727 ntTSL 3 BASIC3.48□□□□□ -1.85
MSH3P20585 LINC00529-201ENST00000443854 241 ntTSL 2 BASIC3.48□□□□□ -1.85
MSH3P20585 USP9YP29-201ENST00000445112 563 ntBASIC3.48□□□□□ -1.85
MSH3P20585 AL139383.1-203ENST00000445227 420 ntTSL 3 BASIC3.48□□□□□ -1.85
MSH3P20585 RPL21P23-201ENST00000446654 460 ntBASIC3.48□□□□□ -1.85
MSH3P20585 OR6K1P-201ENST00000456766 971 ntBASIC3.48□□□□□ -1.85
MSH3P20585 RN7SL594P-201ENST00000470590 287 ntBASIC3.48□□□□□ -1.85
MSH3P20585 AC138057.1-201ENST00000497258 696 ntTSL 3 BASIC3.48□□□□□ -1.85
MSH3P20585 LINC01327-201ENST00000498413 535 ntTSL 3 BASIC3.48□□□□□ -1.85
MSH3P20585 SAR1B-204ENST00000502539 708 ntTSL 5 BASIC3.48□□□□□ -1.85
MSH3P20585 ACTR3BP4-201ENST00000503033 1244 ntBASIC3.48□□□□□ -1.85
MSH3P20585 AC079140.3-201ENST00000511111 550 ntBASIC3.48□□□□□ -1.85
MSH3P20585 AC025881.1-201ENST00000518851 512 ntBASIC3.48□□□□□ -1.85
MSH3P20585 AP005357.1-201ENST00000520749 476 ntTSL 3 BASIC3.48□□□□□ -1.85
MSH3P20585 AP001205.1-201ENST00000521625 449 ntTSL 3 BASIC3.48□□□□□ -1.85
MSH3P20585 OR4R3P-201ENST00000525084 838 ntBASIC3.48□□□□□ -1.85
MSH3P20585 AL138812.1-201ENST00000525573 471 ntTSL 3 BASIC3.48□□□□□ -1.85
MSH3P20585 AKAP7-208ENST00000537868 1006 ntTSL 5 BASIC3.48□□□□□ -1.85
MSH3P20585 AC018410.2-201ENST00000540410 610 ntTSL 5 BASIC3.48□□□□□ -1.85
MSH3P20585 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC3.48□□□□□ -1.85
MSH3P20585 AL355773.1-201ENST00000554458 459 ntTSL 3 BASIC3.48□□□□□ -1.85
MSH3P20585 AC012213.3-201ENST00000577199 777 ntBASIC3.48□□□□□ -1.85
MSH3P20585 AC003687.1-201ENST00000578040 427 ntTSL 3 BASIC3.48□□□□□ -1.85
MSH3P20585 LINC01470-205ENST00000584829 681 ntTSL 3 BASIC3.48□□□□□ -1.85
MSH3P20585 MIR548AB-201ENST00000584917 84 ntBASIC3.48□□□□□ -1.85
MSH3P20585 MIR7515HG-213ENST00000585872 758 ntTSL 5 BASIC3.48□□□□□ -1.85
MSH3P20585 AL353997.4-201ENST00000586196 166 ntBASIC3.48□□□□□ -1.85
MSH3P20585 AC012593.1-213ENST00000587255 510 ntTSL 5 BASIC3.48□□□□□ -1.85
MSH3P20585 ZNF28-207ENST00000594602 684 ntTSL 5 BASIC3.48□□□□□ -1.85
MSH3P20585 U3.45-201ENST00000607547 219 ntBASIC3.48□□□□□ -1.85
MSH3P20585 AC103591.3-201ENST00000608684 209 ntBASIC3.48□□□□□ -1.85
MSH3P20585 AC027045.1-201ENST00000609065 202 ntTSL 5 BASIC3.48□□□□□ -1.85
MSH3P20585 MIR8058-201ENST00000615737 89 ntBASIC3.48□□□□□ -1.85
MSH3P20585 AC027807.2-201ENST00000616099 408 ntBASIC3.48□□□□□ -1.85
MSH3P20585 MAGI2-AS3-224ENST00000619135 205 ntTSL 5 BASIC3.48□□□□□ -1.85
MSH3P20585 XIST_intron.1-201ENST00000619444 68 ntBASIC3.48□□□□□ -1.85
MSH3P20585 AC243312.2-201ENST00000623340 601 ntBASIC3.48□□□□□ -1.85
MSH3P20585 AC098679.4-201ENST00000624241 654 ntBASIC3.48□□□□□ -1.85
MSH3P20585 MIR7153-201ENST00000637758 57 ntBASIC3.48□□□□□ -1.85
MSH3P20585 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC3.48□□□□□ -1.85
MSH3P20585 PLPPR4-201ENST00000370184 4505 ntTSL 5 BASIC3.48□□□□□ -1.85
MSH3P20585 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
MSH3P20585 P2RY12-201ENST00000302632 1766 ntAPPRIS P1 TSL 1 (best) BASIC3.48□□□□□ -1.85
MSH3P20585 SLC8A1-207ENST00000406785 20987 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
MSH3P20585 TTN-204ENST00000360870 18218 ntTSL 5 BASIC3.47□□□□□ -1.85
MSH3P20585 SYNE1-201ENST00000341594 26584 ntAPPRIS ALT2 TSL 5 BASIC3.47□□□□□ -1.85
MSH3P20585 PPIG-207ENST00000448752 2498 ntAPPRIS P1 TSL 1 (best) BASIC3.47□□□□□ -1.85
MSH3P20585 AL157700.1-201ENST00000561973 1432 ntBASIC3.47□□□□□ -1.85
MSH3P20585 FGF7P2-201ENST00000332473 296 ntBASIC3.47□□□□□ -1.85
MSH3P20585 RNU6-28P-201ENST00000362378 107 ntBASIC3.47□□□□□ -1.85
MSH3P20585 RNU5F-7P-201ENST00000363696 115 ntBASIC3.47□□□□□ -1.85
MSH3P20585 TXNDC8-203ENST00000374511 472 ntAPPRIS ALT2 TSL 5 BASIC3.47□□□□□ -1.85
MSH3P20585 U8.14-201ENST00000390843 143 ntBASIC3.47□□□□□ -1.85
MSH3P20585 SNORA48.7-201ENST00000391302 135 ntBASIC3.47□□□□□ -1.85
MSH3P20585 AC239803.1-203ENST00000411978 452 ntTSL 2 BASIC3.47□□□□□ -1.85
MSH3P20585 AL357500.1-201ENST00000413004 279 ntTSL 3 BASIC3.47□□□□□ -1.85
MSH3P20585 AC068533.1-201ENST00000418542 415 ntBASIC3.47□□□□□ -1.85
MSH3P20585 BX842559.1-201ENST00000419615 532 ntBASIC3.47□□□□□ -1.85
MSH3P20585 AC091493.1-201ENST00000426218 411 ntTSL 3 BASIC3.47□□□□□ -1.85
MSH3P20585 AC109583.1-201ENST00000432156 268 ntBASIC3.47□□□□□ -1.85
MSH3P20585 AL445259.1-202ENST00000434768 379 ntTSL 3 BASIC3.47□□□□□ -1.85
MSH3P20585 GDI2P2-201ENST00000445131 608 ntBASIC3.47□□□□□ -1.85
MSH3P20585 NPM1P49-201ENST00000448027 714 ntBASIC3.47□□□□□ -1.85
MSH3P20585 AP000542.1-201ENST00000448473 371 ntBASIC3.47□□□□□ -1.85
MSH3P20585 HMGB3P8-201ENST00000449709 577 ntBASIC3.47□□□□□ -1.85
MSH3P20585 AC016751.1-201ENST00000458254 306 ntTSL 3 BASIC3.47□□□□□ -1.85
MSH3P20585 AC087312.1-201ENST00000471411 480 ntBASIC3.47□□□□□ -1.85
MSH3P20585 DNAJC12-205ENST00000483798 769 ntTSL 3 BASIC3.47□□□□□ -1.85
MSH3P20585 AC093297.2-207ENST00000505401 692 ntTSL 3 BASIC3.47□□□□□ -1.85
MSH3P20585 CTD-2350J17.1-202ENST00000510456 360 ntTSL 2 BASIC3.47□□□□□ -1.85
MSH3P20585 AC016550.2-202ENST00000511940 581 ntTSL 2 BASIC3.47□□□□□ -1.85
MSH3P20585 AC026991.1-201ENST00000520815 463 ntTSL 3 BASIC3.47□□□□□ -1.85
MSH3P20585 ASPH-224ENST00000522603 842 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
MSH3P20585 NRG1-IT1-203ENST00000523743 292 ntTSL 3 BASIC3.47□□□□□ -1.85
MSH3P20585 OR5B10P-201ENST00000532869 642 ntBASIC3.47□□□□□ -1.85
MSH3P20585 AL049779.1-201ENST00000553306 670 ntTSL 2 BASIC3.47□□□□□ -1.85
MSH3P20585 ZNF192P1-203ENST00000565888 810 ntBASIC3.47□□□□□ -1.85
MSH3P20585 AC107954.1-201ENST00000565906 727 ntBASIC3.47□□□□□ -1.85
MSH3P20585 AC091691.2-201ENST00000581940 567 ntTSL 4 BASIC3.47□□□□□ -1.85
MSH3P20585 AC068790.2-201ENST00000602601 557 ntBASIC3.47□□□□□ -1.85
MSH3P20585 AC110801.1-201ENST00000623590 212 ntBASIC3.47□□□□□ -1.85
MSH3P20585 AL358154.1-201ENST00000627075 444 ntTSL 3 BASIC3.47□□□□□ -1.85
MSH3P20585 AC093591.3-201ENST00000634516 308 ntBASIC3.47□□□□□ -1.85
MSH3P20585 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC3.47□□□□□ -1.85
MSH3P20585 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC3.47□□□□□ -1.85
MSH3P20585 KNTC1-204ENST00000436959 2412 ntTSL 2 BASIC3.46□□□□□ -1.85
MSH3P20585 LINC00907-209ENST00000593234 3376 ntTSL 1 (best) BASIC3.46□□□□□ -1.85
MSH3P20585 FMN2-207ENST00000545751 1913 ntTSL 5 BASIC3.46□□□□□ -1.85
MSH3P20585 GPRC6A-201ENST00000310357 2860 ntAPPRIS P1 TSL 1 (best) BASIC3.46□□□□□ -1.85
MSH3P20585 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC3.46□□□□□ -1.86
MSH3P20585 AC005550.3-201ENST00000451240 3743 ntTSL 1 (best) BASIC3.46□□□□□ -1.86
MSH3P20585 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC3.46□□□□□ -1.86
MSH3P20585 OR10A7-201ENST00000326258 951 ntAPPRIS P1 BASIC3.46□□□□□ -1.86
MSH3P20585 RNU5E-5P-201ENST00000365379 116 ntBASIC3.46□□□□□ -1.86
MSH3P20585 RNU6-744P-201ENST00000365557 107 ntBASIC3.46□□□□□ -1.86
Retrieved 100 of 98,524 protein–RNA pairs in 87.8 ms