Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 Y_RNA.212-201ENST00000364177 102 ntBASIC4.03□□□□□ -1.76
HOXA3O43365 RNVU1-6-201ENST00000364688 164 ntBASIC4.03□□□□□ -1.76
HOXA3O43365 SNORA2.3-201ENST00000383920 135 ntBASIC4.03□□□□□ -1.76
HOXA3O43365 MIR141-201ENST00000384975 95 ntBASIC4.03□□□□□ -1.76
HOXA3O43365 RNA5SP219-201ENST00000390940 113 ntBASIC4.03□□□□□ -1.76
HOXA3O43365 SNORD70.1-201ENST00000391007 85 ntBASIC4.03□□□□□ -1.76
HOXA3O43365 RNU6-370P-201ENST00000411008 104 ntBASIC4.03□□□□□ -1.76
HOXA3O43365 BX682237.1-201ENST00000415016 335 ntBASIC4.03□□□□□ -1.76
HOXA3O43365 AMMECR1LP1-201ENST00000415152 841 ntBASIC4.03□□□□□ -1.76
HOXA3O43365 AL590139.1-201ENST00000416267 400 ntBASIC4.03□□□□□ -1.76
HOXA3O43365 C6orf52-203ENST00000426700 493 ntAPPRIS P2 TSL 2 BASIC4.03□□□□□ -1.76
HOXA3O43365 AL691515.1-201ENST00000432976 733 ntTSL 2 BASIC4.03□□□□□ -1.76
HOXA3O43365 AL589765.3-201ENST00000446084 462 ntBASIC4.03□□□□□ -1.76
HOXA3O43365 RPS11P1-201ENST00000451072 473 ntBASIC4.03□□□□□ -1.76
HOXA3O43365 GAS5-223ENST00000452197 483 ntTSL 3 BASIC4.03□□□□□ -1.76
HOXA3O43365 PTCHD1-AS-201ENST00000455399 718 ntTSL 3 BASIC4.03□□□□□ -1.76
HOXA3O43365 RNU7-152P-201ENST00000458982 64 ntBASIC4.03□□□□□ -1.76
HOXA3O43365 CEACAMP10-202ENST00000495431 496 ntBASIC4.03□□□□□ -1.76
HOXA3O43365 MRPS33P2-201ENST00000507850 322 ntBASIC4.03□□□□□ -1.76
HOXA3O43365 HIGD1AP13-201ENST00000509878 289 ntBASIC4.03□□□□□ -1.76
HOXA3O43365 OR51K1P-201ENST00000510214 950 ntBASIC4.03□□□□□ -1.76
HOXA3O43365 MEPE-206ENST00000511670 550 ntTSL 4 BASIC4.03□□□□□ -1.76
HOXA3O43365 MAL2-201ENST00000522112 573 ntTSL 4 BASIC4.03□□□□□ -1.76
HOXA3O43365 AP006587.4-201ENST00000526053 529 ntBASIC4.03□□□□□ -1.76
HOXA3O43365 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC4.03□□□□□ -1.76
HOXA3O43365 MS4A4E-206ENST00000528394 555 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
HOXA3O43365 AC135001.1-201ENST00000544546 283 ntBASIC4.03□□□□□ -1.76
HOXA3O43365 LINC02306-201ENST00000546412 529 ntTSL 3 BASIC4.03□□□□□ -1.76
HOXA3O43365 AC068446.3-201ENST00000555285 382 ntBASIC4.03□□□□□ -1.76
HOXA3O43365 AL031600.2-201ENST00000563223 307 ntTSL 5 BASIC4.03□□□□□ -1.76
HOXA3O43365 AC007151.1-201ENST00000572774 483 ntBASIC4.03□□□□□ -1.76
HOXA3O43365 LIVAR-201ENST00000578633 384 ntTSL 3 BASIC4.03□□□□□ -1.76
HOXA3O43365 OR7A5-202ENST00000594432 1029 ntAPPRIS P1 BASIC4.03□□□□□ -1.76
HOXA3O43365 AC020910.1-201ENST00000599404 413 ntTSL 5 BASIC4.03□□□□□ -1.76
HOXA3O43365 IGHV3-29-201ENST00000604817 344 ntBASIC4.03□□□□□ -1.76
HOXA3O43365 AL158032.1-201ENST00000605401 106 ntBASIC4.03□□□□□ -1.76
HOXA3O43365 AL355802.3-201ENST00000607571 545 ntBASIC4.03□□□□□ -1.76
HOXA3O43365 AP005432.2-201ENST00000608162 586 ntBASIC4.03□□□□□ -1.76
HOXA3O43365 AC009570.1-201ENST00000609599 745 ntBASIC4.03□□□□□ -1.76
HOXA3O43365 RASSF8-215ENST00000611440 852 ntTSL 5 BASIC4.03□□□□□ -1.76
HOXA3O43365 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC4.03□□□□□ -1.76
HOXA3O43365 LINC01378-205ENST00000615833 158 ntTSL 5 BASIC4.03□□□□□ -1.76
HOXA3O43365 Metazoa_SRP.193-201ENST00000622007 277 ntBASIC4.03□□□□□ -1.76
HOXA3O43365 ARHGEF3-203ENST00000413728 3992 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
HOXA3O43365 CEP164P1-202ENST00000456938 2472 ntTSL 1 (best) BASIC4.03□□□□□ -1.76
HOXA3O43365 ADAM5-202ENST00000399789 1942 ntBASIC4.03□□□□□ -1.76
HOXA3O43365 AL731566.1-201ENST00000620490 1937 ntBASIC4.03□□□□□ -1.76
HOXA3O43365 SKP1-209ENST00000522552 1683 ntAPPRIS ALT1 TSL 1 (best) BASIC4.03□□□□□ -1.76
HOXA3O43365 NDUFAF4-201ENST00000316149 2399 ntAPPRIS P1 TSL 1 (best) BASIC4.03□□□□□ -1.76
HOXA3O43365 AC009975.2-201ENST00000635306 1429 ntTSL 5 BASIC4.03□□□□□ -1.76
HOXA3O43365 SLC1A3-216ENST00000613445 4030 ntTSL 5 BASIC4.03□□□□□ -1.76
HOXA3O43365 AP001642.1-201ENST00000624727 2117 ntBASIC4.03□□□□□ -1.76
HOXA3O43365 SP110-202ENST00000258382 2080 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
HOXA3O43365 ZEB1-208ENST00000542815 3217 ntAPPRIS ALT2 TSL 2 BASIC4.02□□□□□ -1.77
HOXA3O43365 SPART-201ENST00000355182 4820 ntAPPRIS P1 TSL 5 BASIC4.02□□□□□ -1.77
HOXA3O43365 SLC1A3-202ENST00000381918 3652 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
HOXA3O43365 AL450345.1-202ENST00000605741 3881 ntBASIC4.02□□□□□ -1.77
HOXA3O43365 ZZZ3-202ENST00000370801 4328 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
HOXA3O43365 SAMSN1-206ENST00000619120 2028 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
HOXA3O43365 SAMMSON-226ENST00000642089 1582 ntBASIC4.02□□□□□ -1.77
HOXA3O43365 FAM46D-202ENST00000538312 3106 ntAPPRIS P1 TSL 2 BASIC4.02□□□□□ -1.77
HOXA3O43365 MATR3-228ENST00000620916 3134 ntTSL 5 BASIC4.02□□□□□ -1.77
HOXA3O43365 ZNF445-201ENST00000396077 18299 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
HOXA3O43365 TMEM68-209ENST00000521229 2400 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
HOXA3O43365 ARHGEF12-202ENST00000397843 9660 ntAPPRIS P1 TSL 1 (best) BASIC4.02□□□□□ -1.77
HOXA3O43365 CROT-204ENST00000442291 1993 ntTSL 5 BASIC4.02□□□□□ -1.77
HOXA3O43365 DTHD1-205ENST00000507598 2606 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
HOXA3O43365 ABI3BP-201ENST00000284322 4498 ntAPPRIS P2 TSL 1 (best) BASIC4.02□□□□□ -1.77
HOXA3O43365 Y_RNA.146-201ENST00000363549 102 ntBASIC4.02□□□□□ -1.77
HOXA3O43365 Y_RNA.187-201ENST00000363918 113 ntBASIC4.02□□□□□ -1.77
HOXA3O43365 MIR450B-201ENST00000401182 78 ntBASIC4.02□□□□□ -1.77
HOXA3O43365 RPS16P5-201ENST00000406501 404 ntBASIC4.02□□□□□ -1.77
HOXA3O43365 RNA5SP111-201ENST00000411386 101 ntBASIC4.02□□□□□ -1.77
HOXA3O43365 AL590705.3-201ENST00000416066 474 ntTSL 1 (best) BASIC4.02□□□□□ -1.77
HOXA3O43365 AL139396.1-201ENST00000421137 167 ntBASIC4.02□□□□□ -1.77
HOXA3O43365 PPP1R11P2-201ENST00000423543 382 ntBASIC4.02□□□□□ -1.77
HOXA3O43365 MOBP-206ENST00000428261 561 ntAPPRIS ALT2 TSL 4 BASIC4.02□□□□□ -1.77
HOXA3O43365 RPL7AP49-201ENST00000429522 581 ntBASIC4.02□□□□□ -1.77
HOXA3O43365 ZFY-AS1-202ENST00000431145 419 ntTSL 3 BASIC4.02□□□□□ -1.77
HOXA3O43365 GPM6BP2-201ENST00000432046 144 ntBASIC4.02□□□□□ -1.77
HOXA3O43365 AL591438.1-201ENST00000433508 581 ntBASIC4.02□□□□□ -1.77
HOXA3O43365 AC122136.1-201ENST00000443971 478 ntTSL 3 BASIC4.02□□□□□ -1.77
HOXA3O43365 GPM6BP1-201ENST00000446387 144 ntBASIC4.02□□□□□ -1.77
HOXA3O43365 HMGB3P22-202ENST00000451823 572 ntBASIC4.02□□□□□ -1.77
HOXA3O43365 SIDT1-AS1-201ENST00000462180 465 ntTSL 3 BASIC4.02□□□□□ -1.77
HOXA3O43365 RN7SL459P-201ENST00000481078 302 ntBASIC4.02□□□□□ -1.77
HOXA3O43365 AL163540.1-201ENST00000485382 386 ntBASIC4.02□□□□□ -1.77
HOXA3O43365 RN7SL346P-201ENST00000491561 294 ntBASIC4.02□□□□□ -1.77
HOXA3O43365 AP001086.1-201ENST00000494882 321 ntBASIC4.02□□□□□ -1.77
HOXA3O43365 RPS27P27-201ENST00000498779 255 ntBASIC4.02□□□□□ -1.77
HOXA3O43365 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC4.02□□□□□ -1.77
HOXA3O43365 Y_RNA.689-201ENST00000516589 107 ntBASIC4.02□□□□□ -1.77
HOXA3O43365 Y_RNA.711-201ENST00000516993 102 ntBASIC4.02□□□□□ -1.77
HOXA3O43365 AC069120.1-201ENST00000521623 379 ntTSL 3 BASIC4.02□□□□□ -1.77
HOXA3O43365 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC4.02□□□□□ -1.77
HOXA3O43365 AC091163.1-201ENST00000524012 605 ntTSL 4 BASIC4.02□□□□□ -1.77
HOXA3O43365 COPS8P3-201ENST00000526024 482 ntBASIC4.02□□□□□ -1.77
HOXA3O43365 AC044810.3-201ENST00000527565 589 ntTSL 3 BASIC4.02□□□□□ -1.77
HOXA3O43365 AC011611.2-201ENST00000549888 358 ntTSL 3 BASIC4.02□□□□□ -1.77
HOXA3O43365 AL133371.2-201ENST00000556624 294 ntTSL 3 BASIC4.02□□□□□ -1.77
Retrieved 100 of 98,524 protein–RNA pairs in 103.9 ms