Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AP001011.1-202ENST00000581172 667 ntTSL 3 BASIC4.79□□□□□ -1.64
RNF4P78317 AC097467.3-209ENST00000595760 615 ntTSL 5 BASIC4.79□□□□□ -1.64
RNF4P78317 AL450472.3-201ENST00000615578 367 ntBASIC4.79□□□□□ -1.64
RNF4P78317 AC092608.2-201ENST00000624427 218 ntBASIC4.79□□□□□ -1.64
RNF4P78317 EDIL3-202ENST00000380138 4244 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
RNF4P78317 ZBED6-201ENST00000545588 7979 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
RNF4P78317 TJP1-209ENST00000545208 5007 ntAPPRIS ALT2 TSL 5 BASIC4.79□□□□□ -1.64
RNF4P78317 AC093535.2-201ENST00000624769 2326 ntBASIC4.79□□□□□ -1.64
RNF4P78317 WDR63-201ENST00000294664 2995 ntAPPRIS P3 TSL 1 (best) BASIC4.79□□□□□ -1.64
RNF4P78317 APAF1-205ENST00000547045 3744 ntAPPRIS ALT1 TSL 1 (best) BASIC4.79□□□□□ -1.64
RNF4P78317 RNF111-212ENST00000561186 4536 ntTSL 2 BASIC4.78□□□□□ -1.64
RNF4P78317 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC4.78□□□□□ -1.64
RNF4P78317 A1CF-205ENST00000374001 9221 ntAPPRIS ALT1 TSL 5 BASIC4.78□□□□□ -1.64
RNF4P78317 NBPF9-208ENST00000621074 4302 ntTSL 5 BASIC4.78□□□□□ -1.64
RNF4P78317 CCNB3-201ENST00000276014 4513 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
RNF4P78317 OR8J2-201ENST00000641465 2883 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
RNF4P78317 AL451142.2-201ENST00000429076 2090 ntBASIC4.78□□□□□ -1.64
RNF4P78317 RNA5-8SP7-201ENST00000363443 155 ntBASIC4.78□□□□□ -1.64
RNF4P78317 AC110754.1-201ENST00000399740 601 ntBASIC4.78□□□□□ -1.64
RNF4P78317 AL391417.1-201ENST00000404100 426 ntBASIC4.78□□□□□ -1.64
RNF4P78317 NT5C3A-205ENST00000409467 1032 ntAPPRIS ALT1 TSL 5 BASIC4.78□□□□□ -1.64
RNF4P78317 RNU4-25P-201ENST00000410569 230 ntBASIC4.78□□□□□ -1.64
RNF4P78317 RPS27AP12-201ENST00000429552 465 ntBASIC4.78□□□□□ -1.64
RNF4P78317 SNAP23P1-201ENST00000433229 246 ntBASIC4.78□□□□□ -1.64
RNF4P78317 AC004866.2-201ENST00000438285 481 ntBASIC4.78□□□□□ -1.64
RNF4P78317 NEFMP1-201ENST00000443423 1006 ntBASIC4.78□□□□□ -1.64
RNF4P78317 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC4.78□□□□□ -1.64
RNF4P78317 RNU7-167P-201ENST00000459160 62 ntBASIC4.78□□□□□ -1.64
RNF4P78317 MFAP3L-206ENST00000506110 548 ntTSL 3 BASIC4.78□□□□□ -1.64
RNF4P78317 AC109464.3-201ENST00000509456 204 ntTSL 5 BASIC4.78□□□□□ -1.64
RNF4P78317 MEPE-206ENST00000511670 550 ntTSL 4 BASIC4.78□□□□□ -1.64
RNF4P78317 AC079160.1-201ENST00000513489 739 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
RNF4P78317 AC069272.1-201ENST00000514843 680 ntTSL 3 BASIC4.78□□□□□ -1.64
RNF4P78317 RNU2-69P-201ENST00000516061 100 ntBASIC4.78□□□□□ -1.64
RNF4P78317 SNORA14.1-201ENST00000516113 141 ntBASIC4.78□□□□□ -1.64
RNF4P78317 RNU4ATAC7P-201ENST00000516280 125 ntBASIC4.78□□□□□ -1.64
RNF4P78317 RNA5SP360-201ENST00000516555 118 ntBASIC4.78□□□□□ -1.64
RNF4P78317 IGHVII-44-2-201ENST00000517728 250 ntBASIC4.78□□□□□ -1.64
RNF4P78317 AC023866.1-201ENST00000518064 579 ntTSL 4 BASIC4.78□□□□□ -1.64
RNF4P78317 AP006587.4-201ENST00000526053 529 ntBASIC4.78□□□□□ -1.64
RNF4P78317 AP003122.3-201ENST00000526316 255 ntBASIC4.78□□□□□ -1.64
RNF4P78317 AC078880.2-201ENST00000547948 843 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
RNF4P78317 AC051619.2-201ENST00000559063 397 ntBASIC4.78□□□□□ -1.64
RNF4P78317 PPIAL4F-202ENST00000581138 660 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
RNF4P78317 MIR3941-201ENST00000582572 103 ntBASIC4.78□□□□□ -1.64
RNF4P78317 AC090772.1-201ENST00000583782 507 ntTSL 5 BASIC4.78□□□□□ -1.64
RNF4P78317 Metazoa_SRP.93-201ENST00000622525 276 ntBASIC4.78□□□□□ -1.64
RNF4P78317 MUM1L1-202ENST00000357175 4173 ntAPPRIS P1 TSL 2 BASIC4.78□□□□□ -1.64
RNF4P78317 ERVFRD-3-201ENST00000578561 1617 ntBASIC4.78□□□□□ -1.64
RNF4P78317 IL1RAPL1-202ENST00000378993 3667 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
RNF4P78317 EYA1-203ENST00000388740 3788 ntTSL 5 BASIC4.78□□□□□ -1.64
RNF4P78317 NBPF10-202ENST00000617010 11630 ntTSL 5 BASIC4.77□□□□□ -1.65
RNF4P78317 GPR85-201ENST00000297146 5079 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
RNF4P78317 CHM-201ENST00000357749 5442 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
RNF4P78317 GRID2-208ENST00000611049 4844 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
RNF4P78317 C1orf141-203ENST00000371007 2153 ntAPPRIS P3 TSL 5 BASIC4.77□□□□□ -1.65
RNF4P78317 AFTPH-204ENST00000409933 2811 ntAPPRIS ALT1 TSL 1 (best) BASIC4.77□□□□□ -1.65
RNF4P78317 RNA5SP305-201ENST00000362665 119 ntBASIC4.77□□□□□ -1.65
RNF4P78317 RNU6-1155P-201ENST00000363554 107 ntBASIC4.77□□□□□ -1.65
RNF4P78317 SNORA75B-201ENST00000384053 137 ntBASIC4.77□□□□□ -1.65
RNF4P78317 RPS4XP7-201ENST00000406274 780 ntBASIC4.77□□□□□ -1.65
RNF4P78317 CTSL3P-202ENST00000412179 788 ntBASIC4.77□□□□□ -1.65
RNF4P78317 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC4.77□□□□□ -1.65
RNF4P78317 MCFD2P1-201ENST00000417812 300 ntBASIC4.77□□□□□ -1.65
RNF4P78317 MTCYBP10-201ENST00000424905 650 ntBASIC4.77□□□□□ -1.65
RNF4P78317 AL669831.1-202ENST00000428504 417 ntBASIC4.77□□□□□ -1.65
RNF4P78317 SPATA13-AS1-201ENST00000430733 433 ntTSL 3 BASIC4.77□□□□□ -1.65
RNF4P78317 PTMAP6-201ENST00000439110 327 ntBASIC4.77□□□□□ -1.65
RNF4P78317 CEACAMP7-201ENST00000444105 496 ntBASIC4.77□□□□□ -1.65
RNF4P78317 LAMTOR5P1-201ENST00000444290 270 ntBASIC4.77□□□□□ -1.65
RNF4P78317 AC096644.1-201ENST00000446169 390 ntTSL 3 BASIC4.77□□□□□ -1.65
RNF4P78317 AC073850.1-201ENST00000449243 255 ntBASIC4.77□□□□□ -1.65
RNF4P78317 AL583859.1-201ENST00000455871 335 ntTSL 3 BASIC4.77□□□□□ -1.65
RNF4P78317 FO393408.1-201ENST00000458577 582 ntTSL 5 BASIC4.77□□□□□ -1.65
RNF4P78317 MTATP8P1-201ENST00000467115 207 ntBASIC4.77□□□□□ -1.65
RNF4P78317 AC087884.1-201ENST00000469738 328 ntBASIC4.77□□□□□ -1.65
RNF4P78317 Y_RNA.661-201ENST00000516003 99 ntBASIC4.77□□□□□ -1.65
RNF4P78317 RNU6-1069P-201ENST00000516612 133 ntBASIC4.77□□□□□ -1.65
RNF4P78317 RN7SKP260-201ENST00000516907 149 ntBASIC4.77□□□□□ -1.65
RNF4P78317 AC009902.1-201ENST00000519351 183 ntBASIC4.77□□□□□ -1.65
RNF4P78317 AC009435.1-201ENST00000519555 574 ntTSL 4 BASIC4.77□□□□□ -1.65
RNF4P78317 RNU6-323P-201ENST00000521915 107 ntBASIC4.77□□□□□ -1.65
RNF4P78317 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC4.77□□□□□ -1.65
RNF4P78317 AC126177.3-201ENST00000551839 688 ntBASIC4.77□□□□□ -1.65
RNF4P78317 MEG8-215ENST00000555354 469 ntTSL 3 BASIC4.77□□□□□ -1.65
RNF4P78317 Z98949.1-211ENST00000596813 773 ntTSL 5 BASIC4.77□□□□□ -1.65
RNF4P78317 AC009229.3-201ENST00000608056 282 ntBASIC4.77□□□□□ -1.65
RNF4P78317 SSX9-202ENST00000608568 580 ntTSL 4 BASIC4.77□□□□□ -1.65
RNF4P78317 MIR7155-201ENST00000615925 56 ntBASIC4.77□□□□□ -1.65
RNF4P78317 ATP5A1P2-202ENST00000616464 443 ntBASIC4.77□□□□□ -1.65
RNF4P78317 AC007485.1-201ENST00000616755 206 ntBASIC4.77□□□□□ -1.65
RNF4P78317 MIR6130-201ENST00000619419 109 ntBASIC4.77□□□□□ -1.65
RNF4P78317 AC007998.5-201ENST00000622938 237 ntBASIC4.77□□□□□ -1.65
RNF4P78317 AP002799.1-201ENST00000623552 423 ntBASIC4.77□□□□□ -1.65
RNF4P78317 LINC00706-201ENST00000628989 699 ntTSL 3 BASIC4.77□□□□□ -1.65
RNF4P78317 IQCG-201ENST00000265239 2262 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
RNF4P78317 KLHL4-202ENST00000373119 5818 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
RNF4P78317 CHRM2-203ENST00000445907 5918 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
RNF4P78317 ZNF560-201ENST00000301480 2654 ntAPPRIS P1 TSL 1 (best) BASIC4.77□□□□□ -1.65
RNF4P78317 TMEM68-209ENST00000521229 2400 ntTSL 1 (best) BASIC4.76□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 105.7 ms