Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 RNA5SP184-201ENST00000411071 108 ntBASIC2.26□□□□□ -2.05
FOXA1P55317 RPS6P14-201ENST00000425165 719 ntBASIC2.26□□□□□ -2.05
FOXA1P55317 RPS15AP28-201ENST00000435088 386 ntBASIC2.26□□□□□ -2.05
FOXA1P55317 LINC01307-201ENST00000439146 474 ntTSL 3 BASIC2.26□□□□□ -2.05
FOXA1P55317 AL592182.1-201ENST00000440897 250 ntTSL 5 BASIC2.26□□□□□ -2.05
FOXA1P55317 RPL17P49-201ENST00000443728 411 ntBASIC2.26□□□□□ -2.05
FOXA1P55317 PLCB1-IT1-202ENST00000451443 251 ntTSL 3 BASIC2.26□□□□□ -2.05
FOXA1P55317 HMGB1P15-201ENST00000453854 435 ntBASIC2.26□□□□□ -2.05
FOXA1P55317 AC010285.1-201ENST00000470580 392 ntBASIC2.26□□□□□ -2.05
FOXA1P55317 EPGN-204ENST00000502358 312 ntTSL 1 (best) BASIC2.26□□□□□ -2.05
FOXA1P55317 EPGN-206ENST00000503098 339 ntTSL 1 (best) BASIC2.26□□□□□ -2.05
FOXA1P55317 AC008696.2-201ENST00000503323 825 ntTSL 3 BASIC2.26□□□□□ -2.05
FOXA1P55317 EPGN-207ENST00000505212 285 ntTSL 1 (best) BASIC2.26□□□□□ -2.05
FOXA1P55317 AC118465.1-201ENST00000513820 1271 ntBASIC2.26□□□□□ -2.05
FOXA1P55317 EPGN-209ENST00000514968 312 ntTSL 1 (best) BASIC2.26□□□□□ -2.05
FOXA1P55317 RNU4-29P-201ENST00000515943 174 ntBASIC2.26□□□□□ -2.05
FOXA1P55317 AP000790.1-201ENST00000528891 737 ntBASIC2.26□□□□□ -2.05
FOXA1P55317 AP002833.1-201ENST00000530572 566 ntTSL 3 BASIC2.26□□□□□ -2.05
FOXA1P55317 LINC00871-202ENST00000556071 554 ntTSL 3 BASIC2.26□□□□□ -2.05
FOXA1P55317 MIR4446-201ENST00000578505 67 ntBASIC2.26□□□□□ -2.05
FOXA1P55317 SNORD39.3-201ENST00000584451 71 ntBASIC2.26□□□□□ -2.05
FOXA1P55317 BDH2P1-201ENST00000602288 736 ntBASIC2.26□□□□□ -2.05
FOXA1P55317 AL671511.2-201ENST00000611838 659 ntTSL 2 BASIC2.26□□□□□ -2.05
FOXA1P55317 HIKESHI-208ENST00000618164 499 ntTSL 5 BASIC2.26□□□□□ -2.05
FOXA1P55317 AC006249.1-201ENST00000621223 471 ntBASIC2.26□□□□□ -2.05
FOXA1P55317 BTG3-AS1-201ENST00000626994 552 ntTSL 4 BASIC2.26□□□□□ -2.05
FOXA1P55317 BX649567.1-201ENST00000642071 1134 ntBASIC2.26□□□□□ -2.05
FOXA1P55317 AC097714.1-201ENST00000511272 1647 ntBASIC2.26□□□□□ -2.05
FOXA1P55317 EYS-211ENST00000503581 10589 ntAPPRIS P3 TSL 5 BASIC2.26□□□□□ -2.05
FOXA1P55317 OGN-201ENST00000262551 2971 ntAPPRIS P1 TSL 5 BASIC2.26□□□□□ -2.05
FOXA1P55317 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC2.26□□□□□ -2.05
FOXA1P55317 ZNF85-203ENST00000345030 1689 ntAPPRIS ALT2 TSL 5 BASIC2.25□□□□□ -2.05
FOXA1P55317 ZNF720P1-201ENST00000562403 1939 ntBASIC2.25□□□□□ -2.05
FOXA1P55317 NEB-203ENST00000397345 26202 ntAPPRIS ALT2 TSL 5 BASIC2.25□□□□□ -2.05
FOXA1P55317 NEB-209ENST00000427231 26202 ntAPPRIS ALT2 TSL 5 BASIC2.25□□□□□ -2.05
FOXA1P55317 OR5H8-201ENST00000394191 1045 ntAPPRIS P1 BASIC2.25□□□□□ -2.05
FOXA1P55317 RPA3-203ENST00000401447 414 ntTSL 3 BASIC2.25□□□□□ -2.05
FOXA1P55317 MTCO2P31-201ENST00000402702 684 ntBASIC2.25□□□□□ -2.05
FOXA1P55317 MTCO3P12-201ENST00000416718 547 ntBASIC2.25□□□□□ -2.05
FOXA1P55317 FNDC1-IT1-201ENST00000419703 516 ntTSL 3 BASIC2.25□□□□□ -2.05
FOXA1P55317 FNDC3CP-201ENST00000420795 1155 ntBASIC2.25□□□□□ -2.05
FOXA1P55317 AC006007.1-201ENST00000422084 672 ntTSL 2 BASIC2.25□□□□□ -2.05
FOXA1P55317 AL078590.2-202ENST00000422736 568 ntTSL 3 BASIC2.25□□□□□ -2.05
FOXA1P55317 ZDHHC20P2-201ENST00000424108 429 ntBASIC2.25□□□□□ -2.05
FOXA1P55317 AL035410.1-201ENST00000427409 427 ntBASIC2.25□□□□□ -2.05
FOXA1P55317 AL512637.2-201ENST00000431287 1256 ntBASIC2.25□□□□□ -2.05
FOXA1P55317 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC2.25□□□□□ -2.05
FOXA1P55317 AC018634.1-201ENST00000437554 401 ntBASIC2.25□□□□□ -2.05
FOXA1P55317 TBL1XR1-AS1-201ENST00000454723 414 ntTSL 5 BASIC2.25□□□□□ -2.05
FOXA1P55317 SYT14-204ENST00000472886 2966 ntAPPRIS P3 TSL 1 (best) BASIC2.25□□□□□ -2.05
FOXA1P55317 ENSA-210ENST00000503241 574 ntTSL 3 BASIC2.25□□□□□ -2.05
FOXA1P55317 MND1-203ENST00000504860 638 ntTSL 1 (best) BASIC2.25□□□□□ -2.05
FOXA1P55317 AC016687.2-203ENST00000506650 578 ntTSL 3 BASIC2.25□□□□□ -2.05
FOXA1P55317 AC118282.2-201ENST00000508739 374 ntBASIC2.25□□□□□ -2.05
FOXA1P55317 AC048346.1-201ENST00000510247 144 ntBASIC2.25□□□□□ -2.05
FOXA1P55317 RNA5SP468-201ENST00000516782 93 ntBASIC2.25□□□□□ -2.05
FOXA1P55317 LINC02143-201ENST00000519929 520 ntTSL 3 BASIC2.25□□□□□ -2.05
FOXA1P55317 AC025524.2-211ENST00000519990 1173 ntTSL 1 (best) BASIC2.25□□□□□ -2.05
FOXA1P55317 AC087276.1-201ENST00000529659 480 ntBASIC2.25□□□□□ -2.05
FOXA1P55317 AC091053.2-201ENST00000534169 537 ntTSL 4 BASIC2.25□□□□□ -2.05
FOXA1P55317 AC006518.2-201ENST00000542513 940 ntBASIC2.25□□□□□ -2.05
FOXA1P55317 AL136520.1-202ENST00000555494 763 ntBASIC2.25□□□□□ -2.05
FOXA1P55317 AC090695.1-201ENST00000561269 1222 ntBASIC2.25□□□□□ -2.05
FOXA1P55317 AP005205.1-201ENST00000563503 508 ntBASIC2.25□□□□□ -2.05
FOXA1P55317 AP001021.1-201ENST00000577704 244 ntTSL 3 BASIC2.25□□□□□ -2.05
FOXA1P55317 AC008543.4-201ENST00000585694 442 ntTSL 2 BASIC2.25□□□□□ -2.05
FOXA1P55317 AP001029.3-201ENST00000588063 596 ntBASIC2.25□□□□□ -2.05
FOXA1P55317 AL390838.2-201ENST00000602394 274 ntBASIC2.25□□□□□ -2.05
FOXA1P55317 AL355812.1-201ENST00000603215 216 ntBASIC2.25□□□□□ -2.05
FOXA1P55317 AC002487.1-201ENST00000604565 994 ntBASIC2.25□□□□□ -2.05
FOXA1P55317 NEAT1-205ENST00000616315 483 ntTSL 2 BASIC2.25□□□□□ -2.05
FOXA1P55317 AC078880.5-201ENST00000617845 421 ntBASIC2.25□□□□□ -2.05
FOXA1P55317 SATB1-AS1-258ENST00000629405 664 ntTSL 5 BASIC2.25□□□□□ -2.05
FOXA1P55317 RTL4-201ENST00000340433 2613 ntAPPRIS P1 BASIC2.25□□□□□ -2.05
FOXA1P55317 KTN1-223ENST00000555573 1712 ntTSL 2 BASIC2.25□□□□□ -2.05
FOXA1P55317 CACNB4-238ENST00000636901 7706 ntTSL 5 BASIC2.25□□□□□ -2.05
FOXA1P55317 JCHAIN-206ENST00000543780 1406 ntAPPRIS P1 TSL 1 (best) BASIC2.25□□□□□ -2.05
FOXA1P55317 AC005336.3-201ENST00000623833 2679 ntBASIC2.24□□□□□ -2.05
FOXA1P55317 TOPORSLP1-203ENST00000493279 2871 ntTSL 4 BASIC2.24□□□□□ -2.05
FOXA1P55317 NETO1-202ENST00000397929 1849 ntTSL 1 (best) BASIC2.24□□□□□ -2.05
FOXA1P55317 MIR449A-201ENST00000362113 91 ntBASIC2.24□□□□□ -2.05
FOXA1P55317 SNORD114-30-201ENST00000364448 72 ntBASIC2.24□□□□□ -2.05
FOXA1P55317 RNU6-207P-201ENST00000384137 107 ntBASIC2.24□□□□□ -2.05
FOXA1P55317 AL121978.1-201ENST00000402778 359 ntBASIC2.24□□□□□ -2.05
FOXA1P55317 RNU6-1077P-201ENST00000410506 102 ntBASIC2.24□□□□□ -2.05
FOXA1P55317 AF274854.1-201ENST00000413236 615 ntBASIC2.24□□□□□ -2.05
FOXA1P55317 AC019070.1-201ENST00000415008 1024 ntBASIC2.24□□□□□ -2.05
FOXA1P55317 SFR1P2-201ENST00000421841 730 ntBASIC2.24□□□□□ -2.05
FOXA1P55317 NANOGP5-201ENST00000424456 877 ntBASIC2.24□□□□□ -2.05
FOXA1P55317 LINC01040-201ENST00000425048 666 ntTSL 2 BASIC2.24□□□□□ -2.05
FOXA1P55317 AC006548.1-201ENST00000427470 102 ntBASIC2.24□□□□□ -2.05
FOXA1P55317 RPS7P2-201ENST00000435134 607 ntBASIC2.24□□□□□ -2.05
FOXA1P55317 AC129850.1-201ENST00000436203 508 ntBASIC2.24□□□□□ -2.05
FOXA1P55317 RPL23AP58-201ENST00000440453 469 ntBASIC2.24□□□□□ -2.05
FOXA1P55317 AC025947.1-201ENST00000447943 299 ntTSL 5 BASIC2.24□□□□□ -2.05
FOXA1P55317 AL034418.1-201ENST00000448675 860 ntBASIC2.24□□□□□ -2.05
FOXA1P55317 TPTE2P6-203ENST00000450973 649 ntTSL 5 BASIC2.24□□□□□ -2.05
FOXA1P55317 NPM1P13-201ENST00000452663 865 ntBASIC2.24□□□□□ -2.05
FOXA1P55317 NDUFA5P7-201ENST00000452914 242 ntBASIC2.24□□□□□ -2.05
FOXA1P55317 AC004872.1-201ENST00000456062 469 ntTSL 3 BASIC2.24□□□□□ -2.05
Retrieved 100 of 98,524 protein–RNA pairs in 91.3 ms