Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 RN7SL763P-201ENST00000620922 284 ntBASIC6.16□□□□□ -1.42
COL9A1P20849 AL137067.2-201ENST00000621202 131 ntBASIC6.16□□□□□ -1.42
COL9A1P20849 DNA2-203ENST00000399180 3207 ntTSL 2 BASIC6.16□□□□□ -1.42
COL9A1P20849 OR2AG2-202ENST00000641124 4224 ntAPPRIS P1 BASIC6.16□□□□□ -1.42
COL9A1P20849 OR2AG2-203ENST00000641169 4221 ntAPPRIS P1 BASIC6.16□□□□□ -1.42
COL9A1P20849 TIPARP-207ENST00000542783 3681 ntAPPRIS P1 TSL 1 (best) BASIC6.16□□□□□ -1.42
COL9A1P20849 TLR10-208ENST00000622002 3673 ntAPPRIS P1 TSL 3 BASIC6.16□□□□□ -1.42
COL9A1P20849 PBX1-221ENST00000612123 6062 ntTSL 5 BASIC6.16□□□□□ -1.42
COL9A1P20849 JAKMIP2-205ENST00000507386 5915 ntTSL 1 (best) BASIC6.16□□□□□ -1.42
COL9A1P20849 OSBPL9-203ENST00000428468 2893 ntAPPRIS P3 TSL 1 (best) BASIC6.16□□□□□ -1.42
COL9A1P20849 FCHSD2-208ENST00000458644 2215 ntTSL 2 BASIC6.15□□□□□ -1.42
COL9A1P20849 MAPK10-365ENST00000641902 3825 ntBASIC6.15□□□□□ -1.42
COL9A1P20849 GTDC1-220ENST00000618778 2317 ntTSL 5 BASIC6.15□□□□□ -1.42
COL9A1P20849 AL445487.1-201ENST00000415694 1580 ntBASIC6.15□□□□□ -1.42
COL9A1P20849 SH3D19-210ENST00000514152 5107 ntAPPRIS ALT1 TSL 2 BASIC6.15□□□□□ -1.42
COL9A1P20849 ADAM18-201ENST00000265707 2388 ntAPPRIS P3 TSL 1 (best) BASIC6.15□□□□□ -1.42
COL9A1P20849 TRIQK-206ENST00000518748 3563 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
COL9A1P20849 TRPM7-201ENST00000313478 10400 ntAPPRIS P3 TSL 1 (best) BASIC6.15□□□□□ -1.42
COL9A1P20849 ARFGEF3-201ENST00000251691 14877 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.42
COL9A1P20849 ZNF615-204ENST00000594083 4020 ntAPPRIS ALT2 TSL 1 (best) BASIC6.15□□□□□ -1.42
COL9A1P20849 KCNA2-208ENST00000638616 3279 ntAPPRIS P1 TSL 5 BASIC6.15□□□□□ -1.42
COL9A1P20849 Y_RNA.75-201ENST00000362927 97 ntBASIC6.15□□□□□ -1.42
COL9A1P20849 RNU6-653P-201ENST00000363074 106 ntBASIC6.15□□□□□ -1.42
COL9A1P20849 RNU1-24P-201ENST00000364285 165 ntBASIC6.15□□□□□ -1.42
COL9A1P20849 RNU4-56P-201ENST00000364700 142 ntBASIC6.15□□□□□ -1.42
COL9A1P20849 AC068538.1-201ENST00000376856 336 ntBASIC6.15□□□□□ -1.42
COL9A1P20849 CDC123-202ENST00000378900 933 ntTSL 5 BASIC6.15□□□□□ -1.42
COL9A1P20849 RNU6-1056P-201ENST00000383996 107 ntBASIC6.15□□□□□ -1.42
COL9A1P20849 RNU6-318P-201ENST00000384283 103 ntBASIC6.15□□□□□ -1.42
COL9A1P20849 MIR1193-201ENST00000408109 78 ntBASIC6.15□□□□□ -1.42
COL9A1P20849 RAB28P5-201ENST00000427490 651 ntBASIC6.15□□□□□ -1.42
COL9A1P20849 AP000907.1-201ENST00000428428 510 ntBASIC6.15□□□□□ -1.42
COL9A1P20849 RPS20P1-201ENST00000434853 354 ntBASIC6.15□□□□□ -1.42
COL9A1P20849 POLR2KP2-201ENST00000438155 177 ntBASIC6.15□□□□□ -1.42
COL9A1P20849 AC090804.1-201ENST00000448870 490 ntBASIC6.15□□□□□ -1.42
COL9A1P20849 GEMIN2P1-201ENST00000454246 752 ntBASIC6.15□□□□□ -1.42
COL9A1P20849 AC092919.1-201ENST00000467896 229 ntTSL 2 BASIC6.15□□□□□ -1.42
COL9A1P20849 RPS27AP9-201ENST00000477681 438 ntBASIC6.15□□□□□ -1.42
COL9A1P20849 AC016651.1-201ENST00000502680 822 ntTSL 3 BASIC6.15□□□□□ -1.42
COL9A1P20849 RNA5SP272-201ENST00000516095 111 ntBASIC6.15□□□□□ -1.42
COL9A1P20849 RNU6ATAC24P-201ENST00000516811 135 ntBASIC6.15□□□□□ -1.42
COL9A1P20849 snoU109.6-201ENST00000516831 118 ntBASIC6.15□□□□□ -1.42
COL9A1P20849 PIGY-201ENST00000527353 217 ntAPPRIS P1 BASIC6.15□□□□□ -1.42
COL9A1P20849 AC026116.1-201ENST00000551729 474 ntTSL 3 BASIC6.15□□□□□ -1.42
COL9A1P20849 AC113208.4-201ENST00000563568 206 ntTSL 3 BASIC6.15□□□□□ -1.42
COL9A1P20849 MIR5095-201ENST00000578844 88 ntBASIC6.15□□□□□ -1.42
COL9A1P20849 AC060766.3-201ENST00000591442 263 ntBASIC6.15□□□□□ -1.42
COL9A1P20849 AL139395.1-201ENST00000603662 160 ntBASIC6.15□□□□□ -1.42
COL9A1P20849 RPL23AP88-201ENST00000605759 454 ntBASIC6.15□□□□□ -1.42
COL9A1P20849 AC005828.6-201ENST00000606610 232 ntBASIC6.15□□□□□ -1.42
COL9A1P20849 Clostridiales-1.2-201ENST00000636724 160 ntBASIC6.15□□□□□ -1.42
COL9A1P20849 FTO-223ENST00000640179 210 ntTSL 5 BASIC6.15□□□□□ -1.42
COL9A1P20849 FOXP2-226ENST00000635638 2598 ntAPPRIS ALT1 TSL 5 BASIC6.15□□□□□ -1.42
COL9A1P20849 DNA2-208ENST00000551118 3468 ntTSL 5 BASIC6.15□□□□□ -1.43
COL9A1P20849 RGPD1-206ENST00000641458 5271 ntAPPRIS ALT2 BASIC6.15□□□□□ -1.43
COL9A1P20849 AC005674.2-201ENST00000561486 3510 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
COL9A1P20849 AP000866.6-201ENST00000638898 3579 ntBASIC6.15□□□□□ -1.43
COL9A1P20849 CEACAM1-203ENST00000352591 3170 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
COL9A1P20849 HSD17B13-201ENST00000302219 2269 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
COL9A1P20849 EEF1A1P24-201ENST00000451469 1378 ntBASIC6.15□□□□□ -1.43
COL9A1P20849 GABRR1-206ENST00000611484 3259 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
COL9A1P20849 NRXN3-203ENST00000428277 4219 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
COL9A1P20849 CTAGE11P-201ENST00000451540 2353 ntBASIC6.15□□□□□ -1.43
COL9A1P20849 AQP4-201ENST00000383168 5274 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.43
COL9A1P20849 AP001541.1-201ENST00000623322 1904 ntBASIC6.15□□□□□ -1.43
COL9A1P20849 AL359551.1-201ENST00000442726 2900 ntTSL 2 BASIC6.15□□□□□ -1.43
COL9A1P20849 AC007681.1-201ENST00000604271 3438 ntTSL 4 BASIC6.15□□□□□ -1.43
COL9A1P20849 CHRM5-201ENST00000383263 5410 ntAPPRIS P1 TSL 2 BASIC6.15□□□□□ -1.43
COL9A1P20849 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC6.15□□□□□ -1.43
COL9A1P20849 AP005212.5-201ENST00000577614 3505 ntTSL 5 BASIC6.15□□□□□ -1.43
COL9A1P20849 POLK-210ENST00000508526 2019 ntTSL 1 (best) BASIC6.15□□□□□ -1.43
COL9A1P20849 EHBP1-203ENST00000405289 3591 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
COL9A1P20849 WNK3-201ENST00000354646 11341 ntAPPRIS P3 TSL 1 (best) BASIC6.14□□□□□ -1.43
COL9A1P20849 CHST12-201ENST00000258711 15979 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
COL9A1P20849 CDC7-201ENST00000234626 3173 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
COL9A1P20849 IGF2BP3-201ENST00000258729 4250 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
COL9A1P20849 SRRM1P3-201ENST00000426911 2678 ntBASIC6.14□□□□□ -1.43
COL9A1P20849 HOMEZ-203ENST00000561013 3337 ntAPPRIS ALT2 TSL 2 BASIC6.14□□□□□ -1.43
COL9A1P20849 IL1RL1-202ENST00000311734 3994 ntTSL 1 (best) BASIC6.14□□□□□ -1.43
COL9A1P20849 ERLIN2-211ENST00000523887 2347 ntTSL 2 BASIC6.14□□□□□ -1.43
COL9A1P20849 LINC01415-201ENST00000587320 4071 ntTSL 2 BASIC6.14□□□□□ -1.43
COL9A1P20849 ALMS1-207ENST00000614410 11700 ntAPPRIS ALT2 TSL 5 BASIC6.14□□□□□ -1.43
COL9A1P20849 SYCP2L-207ENST00000543878 2436 ntAPPRIS ALT2 TSL 5 BASIC6.14□□□□□ -1.43
COL9A1P20849 ZNF227-213ENST00000621083 3055 ntAPPRIS P1 TSL 2 BASIC6.14□□□□□ -1.43
COL9A1P20849 CACNB4-234ENST00000636785 3787 ntTSL 5 BASIC6.14□□□□□ -1.43
COL9A1P20849 SLC30A6-201ENST00000282587 5089 ntAPPRIS P1 TSL 1 (best) BASIC6.14□□□□□ -1.43
COL9A1P20849 Y_RNA.33-201ENST00000362591 102 ntBASIC6.14□□□□□ -1.43
COL9A1P20849 Y_RNA.217-201ENST00000364214 105 ntBASIC6.14□□□□□ -1.43
COL9A1P20849 RNU6-879P-201ENST00000364328 108 ntBASIC6.14□□□□□ -1.43
COL9A1P20849 RNU1-106P-201ENST00000384382 164 ntBASIC6.14□□□□□ -1.43
COL9A1P20849 RNU6-843P-201ENST00000384454 104 ntBASIC6.14□□□□□ -1.43
COL9A1P20849 AL592148.1-201ENST00000413568 445 ntBASIC6.14□□□□□ -1.43
COL9A1P20849 AL592045.1-201ENST00000429867 352 ntBASIC6.14□□□□□ -1.43
COL9A1P20849 AC011753.3-201ENST00000443436 406 ntBASIC6.14□□□□□ -1.43
COL9A1P20849 AC098820.1-201ENST00000453157 512 ntTSL 2 BASIC6.14□□□□□ -1.43
COL9A1P20849 Y_RNA.641-201ENST00000459414 105 ntBASIC6.14□□□□□ -1.43
COL9A1P20849 AC083795.1-201ENST00000491760 320 ntBASIC6.14□□□□□ -1.43
COL9A1P20849 HIGD1AP3-201ENST00000515857 278 ntBASIC6.14□□□□□ -1.43
COL9A1P20849 RNU4-57P-201ENST00000515980 135 ntBASIC6.14□□□□□ -1.43
COL9A1P20849 Y_RNA.686-201ENST00000516548 134 ntBASIC6.14□□□□□ -1.43
Retrieved 100 of 98,524 protein–RNA pairs in 104.2 ms