Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 AF230666.1-202ENST00000608375 870 ntTSL 5 BASIC2.32□□□□□ -2.04
TRAV40A0A0B4J280 AL355816.2-201ENST00000610049 647 ntBASIC2.32□□□□□ -2.04
TRAV40A0A0B4J280 Metazoa_SRP.117-201ENST00000615106 292 ntBASIC2.32□□□□□ -2.04
TRAV40A0A0B4J280 AC231759.1-201ENST00000616455 597 ntBASIC2.32□□□□□ -2.04
TRAV40A0A0B4J280 AC018755.4-201ENST00000619715 454 ntBASIC2.32□□□□□ -2.04
TRAV40A0A0B4J280 AC098617.1-218ENST00000628836 624 ntTSL 5 BASIC2.32□□□□□ -2.04
TRAV40A0A0B4J280 FOXP2-210ENST00000403559 6415 ntTSL 2 BASIC2.32□□□□□ -2.04
TRAV40A0A0B4J280 ZMYM2-203ENST00000382874 10139 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
TRAV40A0A0B4J280 SLC10A5P1-201ENST00000379063 1306 ntBASIC2.32□□□□□ -2.04
TRAV40A0A0B4J280 ZNF734P-201ENST00000419494 1534 ntBASIC2.32□□□□□ -2.04
TRAV40A0A0B4J280 MTCO1P24-201ENST00000515438 1558 ntBASIC2.32□□□□□ -2.04
TRAV40A0A0B4J280 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC2.31□□□□□ -2.04
TRAV40A0A0B4J280 ANKRD36BP1-201ENST00000358576 1779 ntBASIC2.31□□□□□ -2.04
TRAV40A0A0B4J280 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC2.31□□□□□ -2.04
TRAV40A0A0B4J280 AC091152.2-201ENST00000591628 2569 ntBASIC2.31□□□□□ -2.04
TRAV40A0A0B4J280 CHD9-203ENST00000447540 11509 ntTSL 5 BASIC2.31□□□□□ -2.04
TRAV40A0A0B4J280 MBNL3-205ENST00000370857 8760 ntTSL 5 BASIC2.31□□□□□ -2.04
TRAV40A0A0B4J280 AL136360.1-201ENST00000503377 1900 ntBASIC2.31□□□□□ -2.04
TRAV40A0A0B4J280 DEFB112-201ENST00000322246 342 ntAPPRIS P1 TSL 1 (best) BASIC2.31□□□□□ -2.04
TRAV40A0A0B4J280 RNU4-92P-201ENST00000363783 136 ntBASIC2.31□□□□□ -2.04
TRAV40A0A0B4J280 RNU6-560P-201ENST00000364007 108 ntBASIC2.31□□□□□ -2.04
TRAV40A0A0B4J280 RNVU1-3-201ENST00000364313 161 ntBASIC2.31□□□□□ -2.04
TRAV40A0A0B4J280 RNU6-343P-201ENST00000364709 104 ntBASIC2.31□□□□□ -2.04
TRAV40A0A0B4J280 Y_RNA.465-201ENST00000384293 102 ntBASIC2.31□□□□□ -2.04
TRAV40A0A0B4J280 RPL23AP29-201ENST00000397284 453 ntBASIC2.31□□□□□ -2.04
TRAV40A0A0B4J280 SLC9B1P2-201ENST00000398120 1184 ntBASIC2.31□□□□□ -2.04
TRAV40A0A0B4J280 RNU6-757P-201ENST00000410334 100 ntBASIC2.31□□□□□ -2.04
TRAV40A0A0B4J280 RNA5SP184-201ENST00000411071 108 ntBASIC2.31□□□□□ -2.04
TRAV40A0A0B4J280 AL391069.1-201ENST00000422153 358 ntTSL 3 BASIC2.31□□□□□ -2.04
TRAV40A0A0B4J280 TRIAP1P1-201ENST00000427062 225 ntBASIC2.31□□□□□ -2.04
TRAV40A0A0B4J280 AC079780.1-201ENST00000428259 207 ntBASIC2.31□□□□□ -2.04
TRAV40A0A0B4J280 AL390023.1-201ENST00000428836 262 ntBASIC2.31□□□□□ -2.04
TRAV40A0A0B4J280 ZRANB2-AS2-204ENST00000430605 213 ntTSL 2 BASIC2.31□□□□□ -2.04
TRAV40A0A0B4J280 AC007327.1-201ENST00000447461 264 ntBASIC2.31□□□□□ -2.04
TRAV40A0A0B4J280 RPL39P6-201ENST00000448289 150 ntBASIC2.31□□□□□ -2.04
TRAV40A0A0B4J280 RPL18AP17-201ENST00000455326 198 ntBASIC2.31□□□□□ -2.04
TRAV40A0A0B4J280 IFT74-AS1-201ENST00000456198 405 ntTSL 2 BASIC2.31□□□□□ -2.04
TRAV40A0A0B4J280 TRBV26-201ENST00000456572 344 ntBASIC2.31□□□□□ -2.04
TRAV40A0A0B4J280 AL136164.1-201ENST00000456795 352 ntTSL 3 BASIC2.31□□□□□ -2.04
TRAV40A0A0B4J280 PNPLA4P1-201ENST00000458328 305 ntBASIC2.31□□□□□ -2.04
TRAV40A0A0B4J280 snoU13.3-201ENST00000459441 104 ntBASIC2.31□□□□□ -2.04
TRAV40A0A0B4J280 RPL21P8-201ENST00000465083 535 ntBASIC2.31□□□□□ -2.04
TRAV40A0A0B4J280 SCOC-206ENST00000506322 687 ntAPPRIS ALT1 TSL 5 BASIC2.31□□□□□ -2.04
TRAV40A0A0B4J280 AC112673.1-201ENST00000513168 575 ntBASIC2.31□□□□□ -2.04
TRAV40A0A0B4J280 RNU6-27P-201ENST00000516146 107 ntBASIC2.31□□□□□ -2.04
TRAV40A0A0B4J280 RNU6-311P-201ENST00000516224 102 ntBASIC2.31□□□□□ -2.04
TRAV40A0A0B4J280 RN7SKP265-201ENST00000516448 223 ntBASIC2.31□□□□□ -2.04
TRAV40A0A0B4J280 LINC02143-201ENST00000519929 520 ntTSL 3 BASIC2.31□□□□□ -2.04
TRAV40A0A0B4J280 AP003181.1-201ENST00000528811 445 ntTSL 3 BASIC2.31□□□□□ -2.04
TRAV40A0A0B4J280 AC087276.4-201ENST00000530042 444 ntTSL 3 BASIC2.31□□□□□ -2.04
TRAV40A0A0B4J280 MTCO2P15-201ENST00000532655 656 ntBASIC2.31□□□□□ -2.04
TRAV40A0A0B4J280 MRPL42-203ENST00000547098 701 ntTSL 3 BASIC2.31□□□□□ -2.04
TRAV40A0A0B4J280 AC091534.1-202ENST00000549953 468 ntTSL 5 BASIC2.31□□□□□ -2.04
TRAV40A0A0B4J280 CENPUP2-201ENST00000555897 1186 ntBASIC2.31□□□□□ -2.04
TRAV40A0A0B4J280 MTND4P33-201ENST00000556706 766 ntBASIC2.31□□□□□ -2.04
TRAV40A0A0B4J280 HMGB1P6-201ENST00000569046 646 ntBASIC2.31□□□□□ -2.04
TRAV40A0A0B4J280 LINC01905-202ENST00000588139 459 ntTSL 3 BASIC2.31□□□□□ -2.04
TRAV40A0A0B4J280 BNIP3P26-201ENST00000600827 554 ntBASIC2.31□□□□□ -2.04
TRAV40A0A0B4J280 AC012669.1-201ENST00000603209 283 ntBASIC2.31□□□□□ -2.04
TRAV40A0A0B4J280 AL035413.2-201ENST00000604801 525 ntBASIC2.31□□□□□ -2.04
TRAV40A0A0B4J280 AC069304.2-201ENST00000605154 435 ntBASIC2.31□□□□□ -2.04
TRAV40A0A0B4J280 AC073968.1-201ENST00000618594 637 ntBASIC2.31□□□□□ -2.04
TRAV40A0A0B4J280 AP000484.1-201ENST00000620067 1252 ntBASIC2.31□□□□□ -2.04
TRAV40A0A0B4J280 AC244517.7-201ENST00000625144 398 ntTSL 3 BASIC2.31□□□□□ -2.04
TRAV40A0A0B4J280 SATB1-AS1-226ENST00000625515 776 ntTSL 5 BASIC2.31□□□□□ -2.04
TRAV40A0A0B4J280 AL139220.2-223ENST00000625982 921 ntTSL 5 BASIC2.31□□□□□ -2.04
TRAV40A0A0B4J280 AC008993.2-201ENST00000631744 806 ntBASIC2.31□□□□□ -2.04
TRAV40A0A0B4J280 MIR1322-201ENST00000638013 71 ntBASIC2.31□□□□□ -2.04
TRAV40A0A0B4J280 TMPRSS11A-202ENST00000508048 3247 ntAPPRIS ALT2 TSL 1 (best) BASIC2.31□□□□□ -2.04
TRAV40A0A0B4J280 MTCO1P23-201ENST00000415223 1526 ntBASIC2.31□□□□□ -2.04
TRAV40A0A0B4J280 MTND5P3-201ENST00000438536 1800 ntBASIC2.31□□□□□ -2.04
TRAV40A0A0B4J280 ATL2-202ENST00000402054 1883 ntTSL 5 BASIC2.31□□□□□ -2.04
TRAV40A0A0B4J280 EXOC6-203ENST00000371552 3564 ntTSL 5 BASIC2.3□□□□□ -2.04
TRAV40A0A0B4J280 BCLAF1-202ENST00000392348 2610 ntTSL 5 BASIC2.3□□□□□ -2.04
TRAV40A0A0B4J280 ZNF567-201ENST00000360729 2691 ntTSL 1 (best) BASIC2.3□□□□□ -2.04
TRAV40A0A0B4J280 AL035425.3-201ENST00000564206 4996 ntBASIC2.3□□□□□ -2.04
TRAV40A0A0B4J280 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC2.3□□□□□ -2.04
TRAV40A0A0B4J280 FTLP6-201ENST00000355274 422 ntBASIC2.3□□□□□ -2.04
TRAV40A0A0B4J280 RPA3-203ENST00000401447 414 ntTSL 3 BASIC2.3□□□□□ -2.04
TRAV40A0A0B4J280 AL024474.1-201ENST00000404655 591 ntBASIC2.3□□□□□ -2.04
TRAV40A0A0B4J280 AL133384.1-201ENST00000412744 351 ntBASIC2.3□□□□□ -2.04
TRAV40A0A0B4J280 AC069280.1-201ENST00000413094 439 ntTSL 3 BASIC2.3□□□□□ -2.04
TRAV40A0A0B4J280 ELF3-AS1-201ENST00000415582 500 ntTSL 2 BASIC2.3□□□□□ -2.04
TRAV40A0A0B4J280 GPC5-IT1-201ENST00000416664 658 ntTSL 3 BASIC2.3□□□□□ -2.04
TRAV40A0A0B4J280 AL390774.2-201ENST00000423942 788 ntTSL 3 BASIC2.3□□□□□ -2.04
TRAV40A0A0B4J280 USP9YP11-201ENST00000427537 717 ntBASIC2.3□□□□□ -2.04
TRAV40A0A0B4J280 PSMA6P3-201ENST00000428242 164 ntBASIC2.3□□□□□ -2.04
TRAV40A0A0B4J280 ZMYM4-AS1-201ENST00000432683 459 ntTSL 2 BASIC2.3□□□□□ -2.04
TRAV40A0A0B4J280 RAB6C-AS1-202ENST00000433431 123 ntBASIC2.3□□□□□ -2.04
TRAV40A0A0B4J280 MTCYBP45-201ENST00000435243 565 ntBASIC2.3□□□□□ -2.04
TRAV40A0A0B4J280 LINC01052-201ENST00000437777 496 ntTSL 3 BASIC2.3□□□□□ -2.04
TRAV40A0A0B4J280 AC092427.1-201ENST00000439177 601 ntBASIC2.3□□□□□ -2.04
TRAV40A0A0B4J280 LINC00113-203ENST00000442550 572 ntTSL 3 BASIC2.3□□□□□ -2.04
TRAV40A0A0B4J280 AC112653.1-201ENST00000443851 386 ntBASIC2.3□□□□□ -2.04
TRAV40A0A0B4J280 EEF1E1P1-201ENST00000446998 430 ntBASIC2.3□□□□□ -2.04
TRAV40A0A0B4J280 AL512658.1-201ENST00000449072 533 ntTSL 3 BASIC2.3□□□□□ -2.04
TRAV40A0A0B4J280 AL445669.2-201ENST00000454425 421 ntBASIC2.3□□□□□ -2.04
TRAV40A0A0B4J280 GRM7-AS3-208ENST00000455623 947 ntTSL 3 BASIC2.3□□□□□ -2.04
TRAV40A0A0B4J280 AC146507.1-201ENST00000468335 354 ntBASIC2.3□□□□□ -2.04
TRAV40A0A0B4J280 HMGB1P25-201ENST00000468402 607 ntBASIC2.3□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 112.4 ms