Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 AC022790.1-201ENST00000522872 204 ntBASIC4.99□□□□□ -1.61
HIF3AQ9Y2N7 AC090124.1-201ENST00000525097 448 ntTSL 3 BASIC4.99□□□□□ -1.61
HIF3AQ9Y2N7 AC005363.1-201ENST00000530779 351 ntBASIC4.99□□□□□ -1.61
HIF3AQ9Y2N7 IGBP1P1-201ENST00000554337 1009 ntBASIC4.99□□□□□ -1.61
HIF3AQ9Y2N7 PWRN1-204ENST00000565241 480 ntTSL 2 BASIC4.99□□□□□ -1.61
HIF3AQ9Y2N7 MIR4716-201ENST00000579628 84 ntBASIC4.99□□□□□ -1.61
HIF3AQ9Y2N7 MIR4512-201ENST00000583257 77 ntBASIC4.99□□□□□ -1.61
HIF3AQ9Y2N7 AC104534.1-201ENST00000594558 566 ntTSL 4 BASIC4.99□□□□□ -1.61
HIF3AQ9Y2N7 AC174048.1-201ENST00000603389 144 ntBASIC4.99□□□□□ -1.61
HIF3AQ9Y2N7 HMGN2P28-201ENST00000606102 262 ntBASIC4.99□□□□□ -1.61
HIF3AQ9Y2N7 AC243829.4-202ENST00000610845 410 ntTSL 5 BASIC4.99□□□□□ -1.61
HIF3AQ9Y2N7 AL138825.1-201ENST00000618587 192 ntBASIC4.99□□□□□ -1.61
HIF3AQ9Y2N7 DOCK10-202ENST00000409592 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC4.99□□□□□ -1.61
HIF3AQ9Y2N7 OR4E2-202ENST00000641524 2855 ntAPPRIS P1 BASIC4.99□□□□□ -1.61
HIF3AQ9Y2N7 ATP2C1-210ENST00000505330 4888 ntAPPRIS ALT2 TSL 2 BASIC4.99□□□□□ -1.61
HIF3AQ9Y2N7 SLC26A7-208ENST00000523719 2902 ntAPPRIS P1 TSL 2 BASIC4.99□□□□□ -1.61
HIF3AQ9Y2N7 LDAH-211ENST00000541941 3807 ntTSL 2 BASIC4.99□□□□□ -1.61
HIF3AQ9Y2N7 TOPBP1-201ENST00000260810 5378 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
HIF3AQ9Y2N7 PARD3B-212ENST00000613457 7559 ntTSL 5 BASIC4.99□□□□□ -1.61
HIF3AQ9Y2N7 AC109446.4-201ENST00000623235 2755 ntBASIC4.99□□□□□ -1.61
HIF3AQ9Y2N7 OR10G4-203ENST00000641722 3301 ntAPPRIS P1 BASIC4.98□□□□□ -1.61
HIF3AQ9Y2N7 DPP8-210ENST00000559233 2953 ntAPPRIS P4 TSL 2 BASIC4.98□□□□□ -1.61
HIF3AQ9Y2N7 AC022893.1-201ENST00000517664 3549 ntTSL 2 BASIC4.98□□□□□ -1.61
HIF3AQ9Y2N7 PGM3-211ENST00000512866 2013 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
HIF3AQ9Y2N7 LINC01289-201ENST00000519550 3712 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
HIF3AQ9Y2N7 RAPGEF4-213ENST00000535187 3707 ntTSL 2 BASIC4.98□□□□□ -1.61
HIF3AQ9Y2N7 OR5AS1-201ENST00000313555 975 ntAPPRIS P1 BASIC4.98□□□□□ -1.61
HIF3AQ9Y2N7 RNU6-989P-201ENST00000362756 107 ntBASIC4.98□□□□□ -1.61
HIF3AQ9Y2N7 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
HIF3AQ9Y2N7 RNA5SP122-201ENST00000384457 108 ntBASIC4.98□□□□□ -1.61
HIF3AQ9Y2N7 MIR323B-201ENST00000385269 82 ntBASIC4.98□□□□□ -1.61
HIF3AQ9Y2N7 HMGB1P20-201ENST00000402555 677 ntBASIC4.98□□□□□ -1.61
HIF3AQ9Y2N7 RNU6-1156P-201ENST00000410365 100 ntBASIC4.98□□□□□ -1.61
HIF3AQ9Y2N7 RPS23P10-201ENST00000416185 486 ntBASIC4.98□□□□□ -1.61
HIF3AQ9Y2N7 SAGE2P-201ENST00000420011 2126 ntBASIC4.98□□□□□ -1.61
HIF3AQ9Y2N7 DCN-203ENST00000420120 753 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
HIF3AQ9Y2N7 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC4.98□□□□□ -1.61
HIF3AQ9Y2N7 ATP5A1P8-201ENST00000423669 1291 ntBASIC4.98□□□□□ -1.61
HIF3AQ9Y2N7 AC008065.1-201ENST00000428525 348 ntBASIC4.98□□□□□ -1.61
HIF3AQ9Y2N7 HLA-DPA3-207ENST00000454398 229 ntBASIC4.98□□□□□ -1.61
HIF3AQ9Y2N7 AL139109.1-201ENST00000455491 297 ntBASIC4.98□□□□□ -1.61
HIF3AQ9Y2N7 AC092422.1-201ENST00000455576 584 ntTSL 4 BASIC4.98□□□□□ -1.61
HIF3AQ9Y2N7 DCN-206ENST00000456569 228 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
HIF3AQ9Y2N7 AC018437.1-201ENST00000492214 406 ntBASIC4.98□□□□□ -1.61
HIF3AQ9Y2N7 NDUFB5P1-201ENST00000508134 564 ntBASIC4.98□□□□□ -1.61
HIF3AQ9Y2N7 RNU6-615P-201ENST00000516065 106 ntBASIC4.98□□□□□ -1.61
HIF3AQ9Y2N7 RNU4ATAC18P-201ENST00000516179 126 ntBASIC4.98□□□□□ -1.61
HIF3AQ9Y2N7 CYCSP27-201ENST00000527643 293 ntBASIC4.98□□□□□ -1.61
HIF3AQ9Y2N7 AP001992.1-201ENST00000533875 723 ntTSL 5 BASIC4.98□□□□□ -1.61
HIF3AQ9Y2N7 SOX5-AS1-201ENST00000539583 573 ntTSL 4 BASIC4.98□□□□□ -1.61
HIF3AQ9Y2N7 LINC02306-201ENST00000546412 529 ntTSL 3 BASIC4.98□□□□□ -1.61
HIF3AQ9Y2N7 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC4.98□□□□□ -1.61
HIF3AQ9Y2N7 CDC42EP3P1-201ENST00000601004 764 ntBASIC4.98□□□□□ -1.61
HIF3AQ9Y2N7 ELOCP5-201ENST00000604924 333 ntBASIC4.98□□□□□ -1.61
HIF3AQ9Y2N7 AC105265.3-202ENST00000610188 459 ntTSL 5 BASIC4.98□□□□□ -1.61
HIF3AQ9Y2N7 FTX_2.1-201ENST00000618816 94 ntBASIC4.98□□□□□ -1.61
HIF3AQ9Y2N7 COA1-220ENST00000640232 192 ntAPPRIS ALT2 TSL 3 BASIC4.98□□□□□ -1.61
HIF3AQ9Y2N7 AL596275.2-204ENST00000641628 552 ntBASIC4.98□□□□□ -1.61
HIF3AQ9Y2N7 AL596275.2-206ENST00000641957 626 ntBASIC4.98□□□□□ -1.61
HIF3AQ9Y2N7 ZNF230-201ENST00000429154 4115 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
HIF3AQ9Y2N7 DTNA-229ENST00000598142 2509 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
HIF3AQ9Y2N7 TRAPPC13-201ENST00000231526 2715 ntAPPRIS ALT1 TSL 5 BASIC4.98□□□□□ -1.61
HIF3AQ9Y2N7 SPATA5-201ENST00000274008 8137 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
HIF3AQ9Y2N7 DTNA-230ENST00000598334 3201 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
HIF3AQ9Y2N7 SLC4A7-206ENST00000428386 7385 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
HIF3AQ9Y2N7 Z95331.1-201ENST00000623075 23112 ntBASIC4.98□□□□□ -1.61
HIF3AQ9Y2N7 AMY2B-201ENST00000361355 2181 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
HIF3AQ9Y2N7 RIMS1-206ENST00000425662 2799 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
HIF3AQ9Y2N7 LINC01581-202ENST00000558874 3173 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
HIF3AQ9Y2N7 LINC00624-202ENST00000621316 3372 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
HIF3AQ9Y2N7 AC100757.1-201ENST00000616872 1835 ntBASIC4.97□□□□□ -1.61
HIF3AQ9Y2N7 HSPA8P4-201ENST00000511877 1920 ntBASIC4.97□□□□□ -1.61
HIF3AQ9Y2N7 AL499616.1-201ENST00000415437 2633 ntTSL 2 BASIC4.97□□□□□ -1.61
HIF3AQ9Y2N7 CCDC178-209ENST00000579947 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC4.97□□□□□ -1.61
HIF3AQ9Y2N7 SDHC-202ENST00000367975 13566 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
HIF3AQ9Y2N7 ADGB-205ENST00000397944 5325 ntAPPRIS P5 TSL 5 BASIC4.97□□□□□ -1.61
HIF3AQ9Y2N7 DSPP-201ENST00000282478 4281 ntAPPRIS P1 TSL 5 BASIC4.97□□□□□ -1.61
HIF3AQ9Y2N7 ATF2-202ENST00000345739 4079 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
HIF3AQ9Y2N7 OR52A5-201ENST00000307388 3973 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
HIF3AQ9Y2N7 OR52A5-202ENST00000642125 3993 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
HIF3AQ9Y2N7 SRRM1P3-201ENST00000426911 2678 ntBASIC4.97□□□□□ -1.61
HIF3AQ9Y2N7 ZNF415-203ENST00000500065 2496 ntAPPRIS ALT2 TSL 4 BASIC4.97□□□□□ -1.61
HIF3AQ9Y2N7 RBMY1F-201ENST00000303766 1887 ntAPPRIS P5 TSL 1 (best) BASIC4.97□□□□□ -1.61
HIF3AQ9Y2N7 AL138820.1-201ENST00000617901 5305 ntBASIC4.97□□□□□ -1.61
HIF3AQ9Y2N7 Y_RNA.180-201ENST00000363867 113 ntBASIC4.97□□□□□ -1.61
HIF3AQ9Y2N7 Y_RNA.270-201ENST00000364693 104 ntBASIC4.97□□□□□ -1.61
HIF3AQ9Y2N7 RNU6-338P-201ENST00000383888 105 ntBASIC4.97□□□□□ -1.61
HIF3AQ9Y2N7 Y_RNA.785-201ENST00000384290 109 ntBASIC4.97□□□□□ -1.61
HIF3AQ9Y2N7 TRAV16-201ENST00000390444 329 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
HIF3AQ9Y2N7 AC092809.3-201ENST00000415453 231 ntBASIC4.97□□□□□ -1.61
HIF3AQ9Y2N7 CYCSP10-201ENST00000417973 294 ntBASIC4.97□□□□□ -1.61
HIF3AQ9Y2N7 TAB3-AS1-201ENST00000428263 245 ntTSL 5 BASIC4.97□□□□□ -1.61
HIF3AQ9Y2N7 SPATA13-AS1-201ENST00000430733 433 ntTSL 3 BASIC4.97□□□□□ -1.61
HIF3AQ9Y2N7 AL591704.1-201ENST00000432574 275 ntBASIC4.97□□□□□ -1.61
HIF3AQ9Y2N7 MACC1-AS1-201ENST00000439285 639 ntTSL 3 BASIC4.97□□□□□ -1.61
HIF3AQ9Y2N7 AC017074.2-201ENST00000439382 607 ntTSL 2 BASIC4.97□□□□□ -1.61
HIF3AQ9Y2N7 CREM-230ENST00000474931 626 ntTSL 2 BASIC4.97□□□□□ -1.61
HIF3AQ9Y2N7 TRBVB-201ENST00000477100 408 ntBASIC4.97□□□□□ -1.61
HIF3AQ9Y2N7 RPL17P19-201ENST00000489069 552 ntBASIC4.97□□□□□ -1.61
HIF3AQ9Y2N7 LECT2-205ENST00000522943 574 ntTSL 3 BASIC4.97□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 97.9 ms