Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 AC009464.1-201ENST00000615731 469 ntBASIC3.59□□□□□ -1.83
CPSF3Q9UKF6 AC138393.3-201ENST00000618397 573 ntTSL 3 BASIC3.59□□□□□ -1.83
CPSF3Q9UKF6 SNORD39.4-201ENST00000620099 78 ntBASIC3.59□□□□□ -1.83
CPSF3Q9UKF6 AC103706.2-201ENST00000638080 240 ntBASIC3.59□□□□□ -1.83
CPSF3Q9UKF6 ZNF804B-202ENST00000611114 3968 ntTSL 5 BASIC3.59□□□□□ -1.83
CPSF3Q9UKF6 CYSLTR2-201ENST00000282018 4672 ntAPPRIS P1 BASIC3.59□□□□□ -1.83
CPSF3Q9UKF6 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC3.59□□□□□ -1.83
CPSF3Q9UKF6 MTND5P1-201ENST00000445440 1375 ntBASIC3.59□□□□□ -1.83
CPSF3Q9UKF6 FASTKD1-205ENST00000453929 2791 ntTSL 2 BASIC3.59□□□□□ -1.83
CPSF3Q9UKF6 ROCK1P1-203ENST00000608049 2457 ntTSL 1 (best) BASIC3.59□□□□□ -1.84
CPSF3Q9UKF6 CADM2-AS1-201ENST00000476021 2656 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
CPSF3Q9UKF6 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.58□□□□□ -1.84
CPSF3Q9UKF6 SYNE2-212ENST00000554584 20508 ntTSL 5 BASIC3.58□□□□□ -1.84
CPSF3Q9UKF6 PCAT4-201ENST00000504263 2091 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
CPSF3Q9UKF6 MUC15-205ENST00000529533 2084 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
CPSF3Q9UKF6 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.58□□□□□ -1.84
CPSF3Q9UKF6 SLAIN1-203ENST00000351546 2394 ntTSL 2 BASIC3.58□□□□□ -1.84
CPSF3Q9UKF6 KRTAP15-1-201ENST00000334067 671 ntAPPRIS P1 BASIC3.58□□□□□ -1.84
CPSF3Q9UKF6 CD2-201ENST00000369477 478 ntTSL 2 BASIC3.58□□□□□ -1.84
CPSF3Q9UKF6 EI24P2-201ENST00000397776 1076 ntBASIC3.58□□□□□ -1.84
CPSF3Q9UKF6 HMGB3P23-201ENST00000414981 585 ntBASIC3.58□□□□□ -1.84
CPSF3Q9UKF6 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC3.58□□□□□ -1.84
CPSF3Q9UKF6 AC063979.1-201ENST00000415539 377 ntBASIC3.58□□□□□ -1.84
CPSF3Q9UKF6 LANCL1-AS1-201ENST00000416344 714 ntTSL 3 BASIC3.58□□□□□ -1.84
CPSF3Q9UKF6 MTCO2P5-201ENST00000422621 426 ntBASIC3.58□□□□□ -1.84
CPSF3Q9UKF6 AL022400.1-201ENST00000423946 935 ntBASIC3.58□□□□□ -1.84
CPSF3Q9UKF6 MTND4LP10-201ENST00000435146 291 ntBASIC3.58□□□□□ -1.84
CPSF3Q9UKF6 MTCYBP34-201ENST00000439552 670 ntBASIC3.58□□□□□ -1.84
CPSF3Q9UKF6 AP002512.3-201ENST00000440231 985 ntAPPRIS P1 BASIC3.58□□□□□ -1.84
CPSF3Q9UKF6 AL591503.2-201ENST00000442314 1005 ntBASIC3.58□□□□□ -1.84
CPSF3Q9UKF6 LINC00278-202ENST00000444263 587 ntTSL 3 BASIC3.58□□□□□ -1.84
CPSF3Q9UKF6 AC002381.1-201ENST00000447049 280 ntBASIC3.58□□□□□ -1.84
CPSF3Q9UKF6 AL353691.1-201ENST00000451332 387 ntBASIC3.58□□□□□ -1.84
CPSF3Q9UKF6 RPL32P34-201ENST00000486380 400 ntBASIC3.58□□□□□ -1.84
CPSF3Q9UKF6 AC016933.1-201ENST00000504735 539 ntTSL 2 BASIC3.58□□□□□ -1.84
CPSF3Q9UKF6 LINC02379-201ENST00000505741 300 ntTSL 3 BASIC3.58□□□□□ -1.84
CPSF3Q9UKF6 AC118282.1-201ENST00000506408 765 ntBASIC3.58□□□□□ -1.84
CPSF3Q9UKF6 LINC01861-201ENST00000509568 537 ntTSL 4 BASIC3.58□□□□□ -1.84
CPSF3Q9UKF6 ERAP2-205ENST00000510309 1275 ntTSL 1 (best) BASIC3.58□□□□□ -1.84
CPSF3Q9UKF6 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC3.58□□□□□ -1.84
CPSF3Q9UKF6 HTN1-204ENST00000511674 623 ntAPPRIS P1 TSL 2 BASIC3.58□□□□□ -1.84
CPSF3Q9UKF6 AC026780.1-201ENST00000512237 952 ntTSL 3 BASIC3.58□□□□□ -1.84
CPSF3Q9UKF6 AC095057.2-201ENST00000515422 553 ntTSL 4 BASIC3.58□□□□□ -1.84
CPSF3Q9UKF6 COX6CP8-201ENST00000522620 226 ntBASIC3.58□□□□□ -1.84
CPSF3Q9UKF6 UBTFL10-201ENST00000528532 562 ntBASIC3.58□□□□□ -1.84
CPSF3Q9UKF6 AC107882.1-201ENST00000530837 477 ntTSL 3 BASIC3.58□□□□□ -1.84
CPSF3Q9UKF6 SETP7-201ENST00000552169 453 ntBASIC3.58□□□□□ -1.84
CPSF3Q9UKF6 CERS3-AS1-202ENST00000560718 432 ntTSL 3 BASIC3.58□□□□□ -1.84
CPSF3Q9UKF6 MYL12B-204ENST00000584539 1064 ntAPPRIS P1 TSL 3 BASIC3.58□□□□□ -1.84
CPSF3Q9UKF6 AL157938.2-201ENST00000587264 894 ntTSL 5 BASIC3.58□□□□□ -1.84
CPSF3Q9UKF6 AC099811.4-201ENST00000592536 496 ntTSL 2 BASIC3.58□□□□□ -1.84
CPSF3Q9UKF6 AC098617.1-215ENST00000594798 1152 ntTSL 5 BASIC3.58□□□□□ -1.84
CPSF3Q9UKF6 VN1R90P-201ENST00000595717 726 ntBASIC3.58□□□□□ -1.84
CPSF3Q9UKF6 AL109653.1-201ENST00000603091 248 ntBASIC3.58□□□□□ -1.84
CPSF3Q9UKF6 AL162713.1-201ENST00000604480 262 ntBASIC3.58□□□□□ -1.84
CPSF3Q9UKF6 AL139344.1-201ENST00000605228 195 ntBASIC3.58□□□□□ -1.84
CPSF3Q9UKF6 AC073657.2-201ENST00000605661 303 ntBASIC3.58□□□□□ -1.84
CPSF3Q9UKF6 AC024560.3-201ENST00000608482 349 ntBASIC3.58□□□□□ -1.84
CPSF3Q9UKF6 AC096577.2-201ENST00000611455 153 ntBASIC3.58□□□□□ -1.84
CPSF3Q9UKF6 AC245297.3-203ENST00000612135 405 ntTSL 5 BASIC3.58□□□□□ -1.84
CPSF3Q9UKF6 AL592295.2-201ENST00000612578 206 ntBASIC3.58□□□□□ -1.84
CPSF3Q9UKF6 RNVU1-4-201ENST00000612985 164 ntBASIC3.58□□□□□ -1.84
CPSF3Q9UKF6 MIR7112-201ENST00000616126 65 ntBASIC3.58□□□□□ -1.84
CPSF3Q9UKF6 AL357080.1-201ENST00000617394 239 ntBASIC3.58□□□□□ -1.84
CPSF3Q9UKF6 AC018816.2-201ENST00000621460 353 ntBASIC3.58□□□□□ -1.84
CPSF3Q9UKF6 AL139220.2-223ENST00000625982 921 ntTSL 5 BASIC3.58□□□□□ -1.84
CPSF3Q9UKF6 AC011477.1-204ENST00000623416 1325 ntBASIC3.58□□□□□ -1.84
CPSF3Q9UKF6 MBNL3-204ENST00000370853 2661 ntAPPRIS P4 TSL 1 (best) BASIC3.58□□□□□ -1.84
CPSF3Q9UKF6 RIOK3P1-201ENST00000418778 1528 ntBASIC3.58□□□□□ -1.84
CPSF3Q9UKF6 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.58□□□□□ -1.84
CPSF3Q9UKF6 AC007256.1-201ENST00000392253 2765 ntBASIC3.57□□□□□ -1.84
CPSF3Q9UKF6 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.57□□□□□ -1.84
CPSF3Q9UKF6 DNAH12-201ENST00000311202 1555 ntTSL 2 BASIC3.57□□□□□ -1.84
CPSF3Q9UKF6 CD80-202ENST00000383669 771 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
CPSF3Q9UKF6 PRB2-201ENST00000389362 1429 ntAPPRIS P2 TSL 5 BASIC3.57□□□□□ -1.84
CPSF3Q9UKF6 AL357075.1-201ENST00000404107 726 ntBASIC3.57□□□□□ -1.84
CPSF3Q9UKF6 AL591034.1-201ENST00000407447 340 ntBASIC3.57□□□□□ -1.84
CPSF3Q9UKF6 RAP1BP1-201ENST00000412709 553 ntBASIC3.57□□□□□ -1.84
CPSF3Q9UKF6 AL024509.3-201ENST00000413898 745 ntTSL 1 (best) BASIC3.57□□□□□ -1.84
CPSF3Q9UKF6 AC006369.2-201ENST00000431712 384 ntTSL 3 BASIC3.57□□□□□ -1.84
CPSF3Q9UKF6 LINC00353-201ENST00000435401 685 ntTSL 5 BASIC3.57□□□□□ -1.84
CPSF3Q9UKF6 AC016644.1-201ENST00000438553 434 ntTSL 2 BASIC3.57□□□□□ -1.84
CPSF3Q9UKF6 AL354941.1-201ENST00000438600 464 ntBASIC3.57□□□□□ -1.84
CPSF3Q9UKF6 AL117351.1-201ENST00000438864 766 ntBASIC3.57□□□□□ -1.84
CPSF3Q9UKF6 LINC01317-202ENST00000442026 677 ntTSL 3 BASIC3.57□□□□□ -1.84
CPSF3Q9UKF6 MTCYBP3-201ENST00000445588 1137 ntBASIC3.57□□□□□ -1.84
CPSF3Q9UKF6 MTND1P31-201ENST00000449206 961 ntBASIC3.57□□□□□ -1.84
CPSF3Q9UKF6 Z82190.1-201ENST00000454534 490 ntBASIC3.57□□□□□ -1.84
CPSF3Q9UKF6 AL023581.2-201ENST00000454588 552 ntTSL 2 BASIC3.57□□□□□ -1.84
CPSF3Q9UKF6 AC004801.2-202ENST00000463559 283 ntBASIC3.57□□□□□ -1.84
CPSF3Q9UKF6 C1orf185-202ENST00000467127 747 ntAPPRIS ALT2 TSL 3 BASIC3.57□□□□□ -1.84
CPSF3Q9UKF6 AC084117.1-201ENST00000496975 270 ntTSL 5 BASIC3.57□□□□□ -1.84
CPSF3Q9UKF6 LINC02213-202ENST00000506021 774 ntTSL 2 BASIC3.57□□□□□ -1.84
CPSF3Q9UKF6 AC097478.1-204ENST00000509723 547 ntTSL 3 BASIC3.57□□□□□ -1.84
CPSF3Q9UKF6 LINC02113-201ENST00000510302 336 ntTSL 3 BASIC3.57□□□□□ -1.84
CPSF3Q9UKF6 ARL2BPP6-201ENST00000512757 439 ntBASIC3.57□□□□□ -1.84
CPSF3Q9UKF6 MTCYBP43-201ENST00000513621 740 ntBASIC3.57□□□□□ -1.84
CPSF3Q9UKF6 RNU6-1129P-201ENST00000515964 104 ntBASIC3.57□□□□□ -1.84
CPSF3Q9UKF6 SNORA31.8-201ENST00000516327 108 ntBASIC3.57□□□□□ -1.84
CPSF3Q9UKF6 AC026407.1-201ENST00000518369 204 ntBASIC3.57□□□□□ -1.84
Retrieved 100 of 98,524 protein–RNA pairs in 159.9 ms