Protein–RNA interactions for Protein: Q9H4L4

SENP3, Sentrin-specific protease 3, humanhuman

Predicted RBP Predictions only

Length 574 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3Q9H4L4 ASB15-206ENST00000451558 4788 ntAPPRIS P1 TSL 5 BASIC10.09□□□□□ -0.79
SENP3Q9H4L4 OR2G6-203ENST00000641804 6084 ntAPPRIS P1 BASIC10.08□□□□□ -0.8
SENP3Q9H4L4 LAMP2-202ENST00000371335 4030 ntAPPRIS ALT2 TSL 1 (best) BASIC10.08□□□□□ -0.8
SENP3Q9H4L4 KLHL2-202ENST00000421009 2452 ntTSL 5 BASIC10.08□□□□□ -0.8
SENP3Q9H4L4 BEND2-202ENST00000380033 4611 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
SENP3Q9H4L4 NEUROD4-201ENST00000242994 3953 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
SENP3Q9H4L4 USPL1-203ENST00000614860 4074 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
SENP3Q9H4L4 TNPO1P2-201ENST00000426249 2665 ntBASIC10.08□□□□□ -0.8
SENP3Q9H4L4 EXO1-208ENST00000518483 2899 ntAPPRIS ALT2 TSL 1 (best) BASIC10.08□□□□□ -0.8
SENP3Q9H4L4 RN7SKP237-201ENST00000364663 301 ntBASIC10.08□□□□□ -0.8
SENP3Q9H4L4 EIF4A1P3-201ENST00000411521 244 ntBASIC10.08□□□□□ -0.8
SENP3Q9H4L4 AHCYP8-201ENST00000425108 209 ntBASIC10.08□□□□□ -0.8
SENP3Q9H4L4 AL354710.1-201ENST00000453641 246 ntBASIC10.08□□□□□ -0.8
SENP3Q9H4L4 AC023449.1-201ENST00000454464 154 ntBASIC10.08□□□□□ -0.8
SENP3Q9H4L4 AL138787.2-201ENST00000466576 367 ntTSL 3 BASIC10.08□□□□□ -0.8
SENP3Q9H4L4 CBX1-205ENST00000495350 550 ntTSL 2 BASIC10.08□□□□□ -0.8
SENP3Q9H4L4 AC091152.3-201ENST00000604227 325 ntBASIC10.08□□□□□ -0.8
SENP3Q9H4L4 AC002064.3-201ENST00000623448 346 ntBASIC10.08□□□□□ -0.8
SENP3Q9H4L4 MIR4302-201ENST00000638058 60 ntBASIC10.08□□□□□ -0.8
SENP3Q9H4L4 MAP4K4-212ENST00000456652 3855 ntTSL 5 BASIC10.08□□□□□ -0.8
SENP3Q9H4L4 ZC3H11A-203ENST00000367212 3004 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
SENP3Q9H4L4 ATXN3-204ENST00000429774 6713 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
SENP3Q9H4L4 MFN1-201ENST00000263969 2754 ntAPPRIS P1 TSL 1 (best) BASIC10.08□□□□□ -0.8
SENP3Q9H4L4 LINC01153-201ENST00000429809 2864 ntTSL 1 (best) BASIC10.08□□□□□ -0.8
SENP3Q9H4L4 ZNF484-203ENST00000395505 3960 ntAPPRIS ALT2 TSL 2 BASIC10.07□□□□□ -0.8
SENP3Q9H4L4 CCR2-202ENST00000400888 2232 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
SENP3Q9H4L4 MECOM-208ENST00000468789 3691 ntAPPRIS P3 TSL 2 BASIC10.07□□□□□ -0.8
SENP3Q9H4L4 NFASC-204ENST00000401399 10205 ntAPPRIS ALT1 TSL 1 (best) BASIC10.07□□□□□ -0.8
SENP3Q9H4L4 CASC1-203ENST00000395987 2363 ntAPPRIS P3 TSL 1 (best) BASIC10.07□□□□□ -0.8
SENP3Q9H4L4 CDHR3-201ENST00000317716 3813 ntAPPRIS P3 TSL 1 (best) BASIC10.07□□□□□ -0.8
SENP3Q9H4L4 MIR208B-201ENST00000401172 77 ntBASIC10.07□□□□□ -0.8
SENP3Q9H4L4 AC092660.1-201ENST00000420648 371 ntTSL 2 BASIC10.07□□□□□ -0.8
SENP3Q9H4L4 HBG2-204ENST00000444587 307 ntTSL 2 BASIC10.07□□□□□ -0.8
SENP3Q9H4L4 RNU6-1337P-201ENST00000516525 95 ntBASIC10.07□□□□□ -0.8
SENP3Q9H4L4 SNORA31.16-201ENST00000516773 139 ntBASIC10.07□□□□□ -0.8
SENP3Q9H4L4 AC007598.1-202ENST00000561528 435 ntTSL 3 BASIC10.07□□□□□ -0.8
SENP3Q9H4L4 AC024592.1-202ENST00000590441 341 ntTSL 3 BASIC10.07□□□□□ -0.8
SENP3Q9H4L4 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC10.07□□□□□ -0.8
SENP3Q9H4L4 LINC01204-203ENST00000609127 2900 ntTSL 2 BASIC10.07□□□□□ -0.8
SENP3Q9H4L4 ANKRD31-203ENST00000506364 6207 ntAPPRIS ALT2 TSL 5 BASIC10.07□□□□□ -0.8
SENP3Q9H4L4 SPATA31A7-206ENST00000619167 4256 ntAPPRIS P1 TSL 1 (best) BASIC10.07□□□□□ -0.8
SENP3Q9H4L4 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC10.07□□□□□ -0.8
SENP3Q9H4L4 SLMAP-202ENST00000295952 4420 ntAPPRIS P1 TSL 2 BASIC10.07□□□□□ -0.8
SENP3Q9H4L4 CCDC77-202ENST00000412006 2253 ntAPPRIS ALT2 TSL 2 BASIC10.07□□□□□ -0.8
SENP3Q9H4L4 AL450326.2-201ENST00000421913 1962 ntBASIC10.06□□□□□ -0.8
SENP3Q9H4L4 PPARA-201ENST00000262735 9965 ntAPPRIS P1 TSL 5 BASIC10.06□□□□□ -0.8
SENP3Q9H4L4 STAU1-210ENST00000614381 3054 ntAPPRIS ALT2 TSL 5 BASIC10.06□□□□□ -0.8
SENP3Q9H4L4 RNU6-633P-201ENST00000362612 103 ntBASIC10.06□□□□□ -0.8
SENP3Q9H4L4 Y_RNA.124-201ENST00000363339 93 ntBASIC10.06□□□□□ -0.8
SENP3Q9H4L4 Y_RNA.454-201ENST00000384224 113 ntBASIC10.06□□□□□ -0.8
SENP3Q9H4L4 AL121835.1-201ENST00000404250 354 ntBASIC10.06□□□□□ -0.8
SENP3Q9H4L4 Z85995.1-201ENST00000415547 335 ntBASIC10.06□□□□□ -0.8
SENP3Q9H4L4 AC019205.3-201ENST00000424573 156 ntBASIC10.06□□□□□ -0.8
SENP3Q9H4L4 IGLC4-201ENST00000517690 248 ntBASIC10.06□□□□□ -0.8
SENP3Q9H4L4 LINC01234-204ENST00000550905 589 ntTSL 3 BASIC10.06□□□□□ -0.8
SENP3Q9H4L4 EEF1B2P1-201ENST00000567221 672 ntBASIC10.06□□□□□ -0.8
SENP3Q9H4L4 LINC01974-201ENST00000575126 494 ntTSL 3 BASIC10.06□□□□□ -0.8
SENP3Q9H4L4 AD001527.1-201ENST00000604228 379 ntTSL 5 BASIC10.06□□□□□ -0.8
SENP3Q9H4L4 ZMYM6-202ENST00000357182 4330 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
SENP3Q9H4L4 ZNF816-203ENST00000357666 2697 ntAPPRIS P1 TSL 1 (best) BASIC10.06□□□□□ -0.8
SENP3Q9H4L4 CEACAM5-203ENST00000405816 2354 ntAPPRIS P3 TSL 1 (best) BASIC10.06□□□□□ -0.8
SENP3Q9H4L4 IQCA1-206ENST00000431676 3069 ntAPPRIS ALT2 TSL 2 BASIC10.05□□□□□ -0.8
SENP3Q9H4L4 ZNF329-204ENST00000598312 3410 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
SENP3Q9H4L4 TIAL1-203ENST00000369093 5072 ntTSL 2 BASIC10.05□□□□□ -0.8
SENP3Q9H4L4 ZNF585B-204ENST00000531805 2971 ntTSL 2 BASIC10.05□□□□□ -0.8
SENP3Q9H4L4 MTO1-202ENST00000370305 2174 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
SENP3Q9H4L4 CECR2-206ENST00000612582 9645 ntAPPRIS ALT2 TSL 5 BASIC10.05□□□□□ -0.8
SENP3Q9H4L4 UGDH-205ENST00000506179 3021 ntAPPRIS P1 TSL 5 BASIC10.05□□□□□ -0.8
SENP3Q9H4L4 LINC02073-201ENST00000588341 2845 ntTSL 2 BASIC10.05□□□□□ -0.8
SENP3Q9H4L4 RNU6-60P-201ENST00000364792 103 ntBASIC10.05□□□□□ -0.8
SENP3Q9H4L4 RNU6-438P-201ENST00000365561 103 ntBASIC10.05□□□□□ -0.8
SENP3Q9H4L4 SNORA1-201ENST00000384107 130 ntBASIC10.05□□□□□ -0.8
SENP3Q9H4L4 Y_RNA.531-201ENST00000384589 121 ntBASIC10.05□□□□□ -0.8
SENP3Q9H4L4 AC026310.1-201ENST00000396004 378 ntBASIC10.05□□□□□ -0.8
SENP3Q9H4L4 AL590143.1-201ENST00000405071 138 ntBASIC10.05□□□□□ -0.8
SENP3Q9H4L4 SNORA77.2-201ENST00000408571 112 ntBASIC10.05□□□□□ -0.8
SENP3Q9H4L4 RPL12P16-201ENST00000431098 498 ntBASIC10.05□□□□□ -0.8
SENP3Q9H4L4 VDAC1P3-201ENST00000434069 851 ntBASIC10.05□□□□□ -0.8
SENP3Q9H4L4 LINC00570-203ENST00000437795 490 ntTSL 3 BASIC10.05□□□□□ -0.8
SENP3Q9H4L4 POU5F1P5-201ENST00000445059 658 ntBASIC10.05□□□□□ -0.8
SENP3Q9H4L4 EEF1B2P6-201ENST00000445713 673 ntBASIC10.05□□□□□ -0.8
SENP3Q9H4L4 RPL23AP14-201ENST00000468281 468 ntBASIC10.05□□□□□ -0.8
SENP3Q9H4L4 RNA5SP441-201ENST00000516809 88 ntBASIC10.05□□□□□ -0.8
SENP3Q9H4L4 INO80-AS1-201ENST00000558967 312 ntTSL 5 BASIC10.05□□□□□ -0.8
SENP3Q9H4L4 AC090181.1-201ENST00000560446 264 ntTSL 3 BASIC10.05□□□□□ -0.8
SENP3Q9H4L4 CYCSP39-201ENST00000565821 309 ntBASIC10.05□□□□□ -0.8
SENP3Q9H4L4 ST7-OT3_3.1-201ENST00000611709 115 ntBASIC10.05□□□□□ -0.8
SENP3Q9H4L4 FAS-AS1.1-201ENST00000615327 126 ntBASIC10.05□□□□□ -0.8
SENP3Q9H4L4 STK4-202ENST00000372806 6342 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
SENP3Q9H4L4 ADGRF2-204ENST00000507065 3043 ntTSL 5 BASIC10.05□□□□□ -0.8
SENP3Q9H4L4 OR5AU1-202ENST00000641039 8232 ntAPPRIS P1 BASIC10.05□□□□□ -0.8
SENP3Q9H4L4 OR2T11-202ENST00000641193 3770 ntAPPRIS P1 BASIC10.05□□□□□ -0.8
SENP3Q9H4L4 RAB5B-201ENST00000360299 5340 ntAPPRIS P1 TSL 1 (best) BASIC10.05□□□□□ -0.8
SENP3Q9H4L4 LINC01358-207ENST00000634502 2575 ntTSL 5 BASIC10.05□□□□□ -0.8
SENP3Q9H4L4 MID1-204ENST00000380782 3352 ntTSL 1 (best) BASIC10.05□□□□□ -0.8
SENP3Q9H4L4 AC244502.1-201ENST00000514473 1951 ntTSL 2 BASIC10.05□□□□□ -0.8
SENP3Q9H4L4 VEPH1-201ENST00000362010 4202 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.8
SENP3Q9H4L4 CA10-204ENST00000570565 2276 ntTSL 5 BASIC10.04□□□□□ -0.8
SENP3Q9H4L4 SLITRK4-202ENST00000356928 3074 ntAPPRIS P1 TSL 2 BASIC10.04□□□□□ -0.8
SENP3Q9H4L4 SELP-203ENST00000367788 2427 ntAPPRIS ALT2 TSL 5 BASIC10.04□□□□□ -0.8
Retrieved 100 of 98,524 protein–RNA pairs in 147.5 ms