Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 RPL21P3-201ENST00000395517 478 ntBASIC3.08□□□□□ -1.92
ZNF540Q8NDQ6 RPL21P75-201ENST00000396599 483 ntBASIC3.08□□□□□ -1.92
ZNF540Q8NDQ6 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
ZNF540Q8NDQ6 RPL21P28-201ENST00000401418 483 ntBASIC3.08□□□□□ -1.92
ZNF540Q8NDQ6 MTCO1P56-201ENST00000401674 224 ntBASIC3.08□□□□□ -1.92
ZNF540Q8NDQ6 AL592114.1-201ENST00000403842 483 ntBASIC3.08□□□□□ -1.92
ZNF540Q8NDQ6 NDUFB4P5-201ENST00000415445 361 ntBASIC3.08□□□□□ -1.92
ZNF540Q8NDQ6 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC3.08□□□□□ -1.92
ZNF540Q8NDQ6 AC007953.1-201ENST00000450500 560 ntTSL 4 BASIC3.08□□□□□ -1.92
ZNF540Q8NDQ6 snoU13.28-201ENST00000459235 104 ntBASIC3.08□□□□□ -1.92
ZNF540Q8NDQ6 AC146507.2-201ENST00000460608 476 ntBASIC3.08□□□□□ -1.92
ZNF540Q8NDQ6 TIPARP-AS1-201ENST00000463449 735 ntTSL 3 BASIC3.08□□□□□ -1.92
ZNF540Q8NDQ6 RPL21P39-201ENST00000463605 483 ntBASIC3.08□□□□□ -1.92
ZNF540Q8NDQ6 AC011979.1-201ENST00000472300 483 ntBASIC3.08□□□□□ -1.92
ZNF540Q8NDQ6 RPL21P93-201ENST00000480465 489 ntBASIC3.08□□□□□ -1.92
ZNF540Q8NDQ6 AC233702.1-201ENST00000482905 502 ntBASIC3.08□□□□□ -1.92
ZNF540Q8NDQ6 AC087190.1-201ENST00000484462 480 ntBASIC3.08□□□□□ -1.92
ZNF540Q8NDQ6 AC093591.1-201ENST00000491435 481 ntBASIC3.08□□□□□ -1.92
ZNF540Q8NDQ6 RPL21P16-201ENST00000495531 483 ntBASIC3.08□□□□□ -1.92
ZNF540Q8NDQ6 AL358832.1-201ENST00000497800 389 ntBASIC3.08□□□□□ -1.92
ZNF540Q8NDQ6 AC147055.4-201ENST00000504399 745 ntBASIC3.08□□□□□ -1.92
ZNF540Q8NDQ6 AC074250.1-201ENST00000511117 192 ntBASIC3.08□□□□□ -1.92
ZNF540Q8NDQ6 SNORA70.24-201ENST00000517233 118 ntBASIC3.08□□□□□ -1.92
ZNF540Q8NDQ6 NECAB1-205ENST00000522820 811 ntTSL 2 BASIC3.08□□□□□ -1.92
ZNF540Q8NDQ6 ZFPM2-AS1-207ENST00000524045 987 ntTSL 3 BASIC3.08□□□□□ -1.92
ZNF540Q8NDQ6 MS4A13-204ENST00000527948 790 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
ZNF540Q8NDQ6 TIMM9-208ENST00000556007 746 ntTSL 3 BASIC3.08□□□□□ -1.92
ZNF540Q8NDQ6 LINC01146-208ENST00000557355 548 ntTSL 4 BASIC3.08□□□□□ -1.92
ZNF540Q8NDQ6 AC090695.1-201ENST00000561269 1222 ntBASIC3.08□□□□□ -1.92
ZNF540Q8NDQ6 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC3.08□□□□□ -1.92
ZNF540Q8NDQ6 CCDC178-211ENST00000581852 876 ntAPPRIS ALT2 TSL 2 BASIC3.08□□□□□ -1.92
ZNF540Q8NDQ6 BNIP3P27-201ENST00000599991 412 ntBASIC3.08□□□□□ -1.92
ZNF540Q8NDQ6 AC096577.2-201ENST00000611455 153 ntBASIC3.08□□□□□ -1.92
ZNF540Q8NDQ6 AC243773.3-201ENST00000613270 256 ntBASIC3.08□□□□□ -1.92
ZNF540Q8NDQ6 MIR7975-201ENST00000619350 68 ntBASIC3.08□□□□□ -1.92
ZNF540Q8NDQ6 U4.6-201ENST00000621618 127 ntBASIC3.08□□□□□ -1.92
ZNF540Q8NDQ6 C8orf89-203ENST00000625134 507 ntAPPRIS ALT2 TSL 1 (best) BASIC3.08□□□□□ -1.92
ZNF540Q8NDQ6 U6.105-201ENST00000637379 88 ntBASIC3.08□□□□□ -1.92
ZNF540Q8NDQ6 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
ZNF540Q8NDQ6 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
ZNF540Q8NDQ6 AL356274.2-201ENST00000624379 3752 ntBASIC3.07□□□□□ -1.92
ZNF540Q8NDQ6 MIPOL1-206ENST00000545536 2073 ntTSL 5 BASIC3.07□□□□□ -1.92
ZNF540Q8NDQ6 FIGNL1-212ENST00000613602 3187 ntAPPRIS P1 TSL 5 BASIC3.07□□□□□ -1.92
ZNF540Q8NDQ6 AP000568.1-201ENST00000282964 442 ntBASIC3.07□□□□□ -1.92
ZNF540Q8NDQ6 CXCL10-201ENST00000306602 1176 ntAPPRIS P1 TSL 1 (best) BASIC3.07□□□□□ -1.92
ZNF540Q8NDQ6 U3.6-201ENST00000363622 211 ntBASIC3.07□□□□□ -1.92
ZNF540Q8NDQ6 RNU6-1122P-201ENST00000384449 107 ntBASIC3.07□□□□□ -1.92
ZNF540Q8NDQ6 U3.19-201ENST00000390893 196 ntBASIC3.07□□□□□ -1.92
ZNF540Q8NDQ6 SNORA26.7-201ENST00000391288 122 ntBASIC3.07□□□□□ -1.92
ZNF540Q8NDQ6 OR5H8-201ENST00000394191 1045 ntAPPRIS P1 BASIC3.07□□□□□ -1.92
ZNF540Q8NDQ6 HMGB1P17-201ENST00000403495 628 ntBASIC3.07□□□□□ -1.92
ZNF540Q8NDQ6 RSL24D1P1-201ENST00000404972 493 ntBASIC3.07□□□□□ -1.92
ZNF540Q8NDQ6 RNU2-25P-201ENST00000411041 191 ntBASIC3.07□□□□□ -1.92
ZNF540Q8NDQ6 ZNF736P7Y-201ENST00000425158 820 ntBASIC3.07□□□□□ -1.92
ZNF540Q8NDQ6 AL512844.2-201ENST00000433990 593 ntBASIC3.07□□□□□ -1.92
ZNF540Q8NDQ6 AC005208.1-201ENST00000435112 599 ntTSL 3 BASIC3.07□□□□□ -1.92
ZNF540Q8NDQ6 PATE1-202ENST00000437148 457 ntAPPRIS ALT2 TSL 1 (best) BASIC3.07□□□□□ -1.92
ZNF540Q8NDQ6 AC009969.1-201ENST00000438726 172 ntBASIC3.07□□□□□ -1.92
ZNF540Q8NDQ6 CASP12-207ENST00000447913 819 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
ZNF540Q8NDQ6 MTATP6P14-201ENST00000455189 673 ntBASIC3.07□□□□□ -1.92
ZNF540Q8NDQ6 FCF1P6-201ENST00000456841 595 ntBASIC3.07□□□□□ -1.92
ZNF540Q8NDQ6 AC069528.1-202ENST00000482888 637 ntBASIC3.07□□□□□ -1.92
ZNF540Q8NDQ6 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC3.07□□□□□ -1.92
ZNF540Q8NDQ6 RN7SL283P-201ENST00000489055 303 ntBASIC3.07□□□□□ -1.92
ZNF540Q8NDQ6 TMEM251P1-201ENST00000503717 318 ntBASIC3.07□□□□□ -1.92
ZNF540Q8NDQ6 NAMPTP2-201ENST00000505629 1115 ntBASIC3.07□□□□□ -1.92
ZNF540Q8NDQ6 AC119751.4-201ENST00000507498 357 ntBASIC3.07□□□□□ -1.92
ZNF540Q8NDQ6 MTCYBP16-201ENST00000509187 1129 ntBASIC3.07□□□□□ -1.92
ZNF540Q8NDQ6 ZCCHC10-207ENST00000509437 1070 ntAPPRIS ALT2 TSL 1 (best) BASIC3.07□□□□□ -1.92
ZNF540Q8NDQ6 AC104827.1-202ENST00000511917 1049 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
ZNF540Q8NDQ6 SCARNA15.2-201ENST00000516409 127 ntBASIC3.07□□□□□ -1.92
ZNF540Q8NDQ6 RNU6-1028P-201ENST00000517164 93 ntBASIC3.07□□□□□ -1.92
ZNF540Q8NDQ6 SCARNA20.6-201ENST00000517251 106 ntBASIC3.07□□□□□ -1.92
ZNF540Q8NDQ6 AC087242.1-201ENST00000536931 572 ntTSL 4 BASIC3.07□□□□□ -1.92
ZNF540Q8NDQ6 HSPE1P20-201ENST00000538133 289 ntBASIC3.07□□□□□ -1.92
ZNF540Q8NDQ6 AC011611.1-201ENST00000552179 197 ntBASIC3.07□□□□□ -1.92
ZNF540Q8NDQ6 AC124947.2-202ENST00000552735 133 ntBASIC3.07□□□□□ -1.92
ZNF540Q8NDQ6 GTF2IP22-201ENST00000554443 182 ntBASIC3.07□□□□□ -1.92
ZNF540Q8NDQ6 HIGD1AP17-201ENST00000554576 276 ntBASIC3.07□□□□□ -1.92
ZNF540Q8NDQ6 LINC2194-201ENST00000567127 454 ntTSL 3 BASIC3.07□□□□□ -1.92
ZNF540Q8NDQ6 RPL23AP84-201ENST00000571193 464 ntBASIC3.07□□□□□ -1.92
ZNF540Q8NDQ6 TTN-AS1-243ENST00000591867 748 ntTSL 5 BASIC3.07□□□□□ -1.92
ZNF540Q8NDQ6 AC004987.4-201ENST00000603383 338 ntBASIC3.07□□□□□ -1.92
ZNF540Q8NDQ6 BNIP3P11-201ENST00000603878 563 ntBASIC3.07□□□□□ -1.92
ZNF540Q8NDQ6 AL450472.3-201ENST00000615578 367 ntBASIC3.07□□□□□ -1.92
ZNF540Q8NDQ6 IL1RL1-204ENST00000409584 2693 ntTSL 5 BASIC3.07□□□□□ -1.92
ZNF540Q8NDQ6 PKN2-AS1-202ENST00000458097 3542 ntTSL 2 BASIC3.06□□□□□ -1.92
ZNF540Q8NDQ6 NEB-220ENST00000618972 26307 ntAPPRIS ALT2 TSL 5 BASIC3.06□□□□□ -1.92
ZNF540Q8NDQ6 GPBP1-201ENST00000264779 1786 ntAPPRIS ALT2 TSL 1 (best) BASIC3.06□□□□□ -1.92
ZNF540Q8NDQ6 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
ZNF540Q8NDQ6 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.06□□□□□ -1.92
ZNF540Q8NDQ6 ADAM5-201ENST00000359790 1663 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
ZNF540Q8NDQ6 RNU6-28P-201ENST00000362378 107 ntBASIC3.06□□□□□ -1.92
ZNF540Q8NDQ6 RNU6-1180P-201ENST00000364935 107 ntBASIC3.06□□□□□ -1.92
ZNF540Q8NDQ6 U8.9-201ENST00000365667 134 ntBASIC3.06□□□□□ -1.92
ZNF540Q8NDQ6 MIR767-201ENST00000390228 109 ntBASIC3.06□□□□□ -1.92
ZNF540Q8NDQ6 RPS3AP25-201ENST00000411660 793 ntBASIC3.06□□□□□ -1.92
ZNF540Q8NDQ6 AL158013.1-202ENST00000419666 520 ntTSL 5 BASIC3.06□□□□□ -1.92
ZNF540Q8NDQ6 AC007435.1-201ENST00000421086 415 ntBASIC3.06□□□□□ -1.92
ZNF540Q8NDQ6 TXNDC8-204ENST00000423740 356 ntTSL 1 (best) BASIC3.06□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 100 ms