Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 AC114546.3-201ENST00000623582 1734 ntBASIC4.24□□□□□ -1.73
COL4A3Q01955 UBE4A-202ENST00000431736 6061 ntAPPRIS P3 TSL 1 (best) BASIC4.24□□□□□ -1.73
COL4A3Q01955 SEC31A-203ENST00000348405 4012 ntAPPRIS ALT2 TSL 1 (best) BASIC4.24□□□□□ -1.73
COL4A3Q01955 PTPRZ1-202ENST00000449182 4627 ntAPPRIS ALT2 TSL 1 (best) BASIC4.24□□□□□ -1.73
COL4A3Q01955 AL161781.1-201ENST00000354277 403 ntBASIC4.24□□□□□ -1.73
COL4A3Q01955 RNU4-1-201ENST00000363925 141 ntBASIC4.24□□□□□ -1.73
COL4A3Q01955 Y_RNA.387-201ENST00000383918 102 ntBASIC4.24□□□□□ -1.73
COL4A3Q01955 MIR195-201ENST00000385194 87 ntBASIC4.24□□□□□ -1.73
COL4A3Q01955 MIR1179-201ENST00000408703 91 ntBASIC4.24□□□□□ -1.73
COL4A3Q01955 RPS7P15-201ENST00000415804 584 ntBASIC4.24□□□□□ -1.73
COL4A3Q01955 AC009161.1-201ENST00000417306 376 ntBASIC4.24□□□□□ -1.73
COL4A3Q01955 MAP1LC3BP1-201ENST00000417653 379 ntBASIC4.24□□□□□ -1.73
COL4A3Q01955 AL500522.1-201ENST00000423667 318 ntTSL 3 BASIC4.24□□□□□ -1.73
COL4A3Q01955 AL355340.1-201ENST00000433085 344 ntTSL 3 BASIC4.24□□□□□ -1.73
COL4A3Q01955 GPR143P-201ENST00000434155 205 ntBASIC4.24□□□□□ -1.73
COL4A3Q01955 AC062032.1-201ENST00000436245 355 ntTSL 5 BASIC4.24□□□□□ -1.73
COL4A3Q01955 ZNF385D-AS2-201ENST00000436306 424 ntTSL 5 BASIC4.24□□□□□ -1.73
COL4A3Q01955 AC006011.1-201ENST00000442758 349 ntBASIC4.24□□□□□ -1.73
COL4A3Q01955 HSPE1P28-201ENST00000443139 211 ntBASIC4.24□□□□□ -1.73
COL4A3Q01955 LINC02146-201ENST00000504244 509 ntTSL 3 BASIC4.24□□□□□ -1.73
COL4A3Q01955 LINC02198-202ENST00000505371 526 ntTSL 5 BASIC4.24□□□□□ -1.73
COL4A3Q01955 TMEM248P1-201ENST00000510579 951 ntBASIC4.24□□□□□ -1.73
COL4A3Q01955 RN7SKP289-201ENST00000517244 295 ntBASIC4.24□□□□□ -1.73
COL4A3Q01955 AC090572.1-201ENST00000519251 160 ntBASIC4.24□□□□□ -1.73
COL4A3Q01955 AC104316.1-201ENST00000521258 625 ntTSL 3 BASIC4.24□□□□□ -1.73
COL4A3Q01955 AC107953.1-201ENST00000522216 297 ntBASIC4.24□□□□□ -1.73
COL4A3Q01955 RGS5-208ENST00000530507 851 ntAPPRIS ALT1 TSL 3 BASIC4.24□□□□□ -1.73
COL4A3Q01955 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC4.24□□□□□ -1.73
COL4A3Q01955 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC4.24□□□□□ -1.73
COL4A3Q01955 AC099313.1-201ENST00000568437 452 ntTSL 2 BASIC4.24□□□□□ -1.73
COL4A3Q01955 LINC01894-201ENST00000580984 487 ntTSL 2 BASIC4.24□□□□□ -1.73
COL4A3Q01955 AC104237.2-201ENST00000612456 443 ntBASIC4.24□□□□□ -1.73
COL4A3Q01955 CT45A6-201ENST00000612878 770 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
COL4A3Q01955 CT45A7-202ENST00000620885 578 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
COL4A3Q01955 AC090971.5-201ENST00000621102 293 ntBASIC4.24□□□□□ -1.73
COL4A3Q01955 AC091953.2-201ENST00000623979 160 ntBASIC4.24□□□□□ -1.73
COL4A3Q01955 ADAMDEC1-201ENST00000256412 2348 ntAPPRIS P3 TSL 1 (best) BASIC4.24□□□□□ -1.73
COL4A3Q01955 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC4.24□□□□□ -1.73
COL4A3Q01955 AP001803.2-201ENST00000532274 2034 ntTSL 2 BASIC4.24□□□□□ -1.73
COL4A3Q01955 HERC1-201ENST00000443617 15137 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
COL4A3Q01955 KIF21A-201ENST00000361418 5044 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
COL4A3Q01955 TFPI-201ENST00000233156 3885 ntAPPRIS P1 TSL 1 (best) BASIC4.24□□□□□ -1.73
COL4A3Q01955 DLC1-209ENST00000511869 2451 ntTSL 1 (best) BASIC4.24□□□□□ -1.73
COL4A3Q01955 AC083843.3-201ENST00000623679 2186 ntBASIC4.23□□□□□ -1.73
COL4A3Q01955 DCDC1-203ENST00000406071 4758 ntAPPRIS P2 TSL 5 BASIC4.23□□□□□ -1.73
COL4A3Q01955 WDPCP-203ENST00000409120 5408 ntTSL 1 (best) BASIC4.23□□□□□ -1.73
COL4A3Q01955 Y_RNA.132-201ENST00000363421 102 ntBASIC4.23□□□□□ -1.73
COL4A3Q01955 RNU6-853P-201ENST00000364306 107 ntBASIC4.23□□□□□ -1.73
COL4A3Q01955 Y_RNA.255-201ENST00000364581 97 ntBASIC4.23□□□□□ -1.73
COL4A3Q01955 SNORA5A-201ENST00000384111 134 ntBASIC4.23□□□□□ -1.73
COL4A3Q01955 Y_RNA.500-201ENST00000384466 111 ntBASIC4.23□□□□□ -1.73
COL4A3Q01955 VN1R36P-201ENST00000414936 291 ntBASIC4.23□□□□□ -1.73
COL4A3Q01955 AC048351.1-201ENST00000420064 602 ntBASIC4.23□□□□□ -1.73
COL4A3Q01955 LINC01351-201ENST00000424735 526 ntTSL 2 BASIC4.23□□□□□ -1.73
COL4A3Q01955 DUTP6-201ENST00000425573 462 ntBASIC4.23□□□□□ -1.73
COL4A3Q01955 AL691497.1-201ENST00000443270 449 ntTSL 2 BASIC4.23□□□□□ -1.73
COL4A3Q01955 AC018643.1-201ENST00000445459 414 ntTSL 5 BASIC4.23□□□□□ -1.73
COL4A3Q01955 MYCBP2-AS1-202ENST00000448470 333 ntTSL 3 BASIC4.23□□□□□ -1.73
COL4A3Q01955 AP1S2P1-201ENST00000457344 379 ntBASIC4.23□□□□□ -1.73
COL4A3Q01955 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC4.23□□□□□ -1.73
COL4A3Q01955 RNU6-329P-201ENST00000459618 107 ntBASIC4.23□□□□□ -1.73
COL4A3Q01955 UBE2DNL-203ENST00000474922 222 ntBASIC4.23□□□□□ -1.73
COL4A3Q01955 AL365356.5-201ENST00000478294 697 ntTSL 2 BASIC4.23□□□□□ -1.73
COL4A3Q01955 BTF3P12-201ENST00000519620 469 ntBASIC4.23□□□□□ -1.73
COL4A3Q01955 AC068672.1-201ENST00000520391 328 ntTSL 3 BASIC4.23□□□□□ -1.73
COL4A3Q01955 AP005597.4-201ENST00000526762 229 ntBASIC4.23□□□□□ -1.73
COL4A3Q01955 AC113192.1-201ENST00000527270 321 ntTSL 3 BASIC4.23□□□□□ -1.73
COL4A3Q01955 CYCSP28-201ENST00000534284 321 ntBASIC4.23□□□□□ -1.73
COL4A3Q01955 AC093515.1-201ENST00000567103 445 ntTSL 5 BASIC4.23□□□□□ -1.73
COL4A3Q01955 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC4.23□□□□□ -1.73
COL4A3Q01955 MIR3171-201ENST00000584270 74 ntBASIC4.23□□□□□ -1.73
COL4A3Q01955 AC110743.1-201ENST00000584870 478 ntBASIC4.23□□□□□ -1.73
COL4A3Q01955 AC098848.2-201ENST00000588023 330 ntBASIC4.23□□□□□ -1.73
COL4A3Q01955 AL355802.3-201ENST00000607571 545 ntBASIC4.23□□□□□ -1.73
COL4A3Q01955 AC022017.1-201ENST00000608793 559 ntTSL 4 BASIC4.23□□□□□ -1.73
COL4A3Q01955 LINC00649-214ENST00000609132 668 ntTSL 5 BASIC4.23□□□□□ -1.73
COL4A3Q01955 AL355472.4-201ENST00000610233 626 ntBASIC4.23□□□□□ -1.73
COL4A3Q01955 AC093838.1-201ENST00000613014 469 ntBASIC4.23□□□□□ -1.73
COL4A3Q01955 AC015967.1-201ENST00000619893 476 ntBASIC4.23□□□□□ -1.73
COL4A3Q01955 AC010976.1-210ENST00000630740 1005 ntTSL 5 BASIC4.23□□□□□ -1.73
COL4A3Q01955 MPDZ-208ENST00000447879 6262 ntAPPRIS ALT2 TSL 1 (best) BASIC4.23□□□□□ -1.73
COL4A3Q01955 OR5A2-203ENST00000641673 9444 ntAPPRIS P1 BASIC4.23□□□□□ -1.73
COL4A3Q01955 FIGN-201ENST00000333129 9536 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
COL4A3Q01955 ZNF705A-204ENST00000610508 3378 ntAPPRIS P1 TSL 5 BASIC4.23□□□□□ -1.73
COL4A3Q01955 EOGT-210ENST00000615922 1931 ntBASIC4.23□□□□□ -1.73
COL4A3Q01955 LINC00648-202ENST00000555985 2885 ntTSL 2 BASIC4.23□□□□□ -1.73
COL4A3Q01955 BCLAF1P2-201ENST00000624956 2609 ntBASIC4.23□□□□□ -1.73
COL4A3Q01955 RFTN2-201ENST00000295049 5827 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
COL4A3Q01955 SLC44A5-201ENST00000370855 4406 ntAPPRIS P3 TSL 1 (best) BASIC4.23□□□□□ -1.73
COL4A3Q01955 EIF2S1-202ENST00000466499 2390 ntAPPRIS P1 TSL 1 (best) BASIC4.23□□□□□ -1.73
COL4A3Q01955 GCSAML-210ENST00000536561 4063 ntAPPRIS P3 TSL 4 BASIC4.23□□□□□ -1.73
COL4A3Q01955 TRAT1-201ENST00000295756 1919 ntAPPRIS P1 TSL 1 (best) BASIC4.22□□□□□ -1.73
COL4A3Q01955 Y_RNA.315-201ENST00000365117 102 ntBASIC4.22□□□□□ -1.73
COL4A3Q01955 RNU6-441P-201ENST00000384545 106 ntBASIC4.22□□□□□ -1.73
COL4A3Q01955 MIR200C-201ENST00000384980 68 ntBASIC4.22□□□□□ -1.73
COL4A3Q01955 AL591416.1-201ENST00000404015 867 ntBASIC4.22□□□□□ -1.73
COL4A3Q01955 PRRC2CP1-201ENST00000404428 159 ntBASIC4.22□□□□□ -1.73
COL4A3Q01955 AL022329.2-201ENST00000413494 660 ntTSL 5 BASIC4.22□□□□□ -1.73
COL4A3Q01955 LINC02542-201ENST00000418567 822 ntTSL 5 BASIC4.22□□□□□ -1.73
COL4A3Q01955 AC006548.1-201ENST00000427470 102 ntBASIC4.22□□□□□ -1.73
Retrieved 100 of 98,524 protein–RNA pairs in 92.2 ms