Protein–RNA interactions for Protein: Q9Y6R9

CCDC61, Coiled-coil domain-containing protein 61, humanhuman

Predictions only

Length 512 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC61Q9Y6R9 SNORA70J-201ENST00000384182 135 ntBASIC7.68□□□□□ -1.18
CCDC61Q9Y6R9 RNA5SP91-201ENST00000390902 119 ntBASIC7.68□□□□□ -1.18
CCDC61Q9Y6R9 AC069218.2-201ENST00000411665 344 ntBASIC7.68□□□□□ -1.18
CCDC61Q9Y6R9 LINC00415-201ENST00000439079 435 ntTSL 3 BASIC7.68□□□□□ -1.18
CCDC61Q9Y6R9 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC7.68□□□□□ -1.18
CCDC61Q9Y6R9 Z92846.1-201ENST00000456203 268 ntBASIC7.68□□□□□ -1.18
CCDC61Q9Y6R9 RN7SKP210-201ENST00000459176 261 ntBASIC7.68□□□□□ -1.18
CCDC61Q9Y6R9 SNHG1-204ENST00000537068 629 ntTSL 5 BASIC7.68□□□□□ -1.18
CCDC61Q9Y6R9 AL160191.1-202ENST00000554008 576 ntTSL 4 BASIC7.68□□□□□ -1.18
CCDC61Q9Y6R9 AC114947.2-201ENST00000565748 2125 ntBASIC7.68□□□□□ -1.18
CCDC61Q9Y6R9 RN7SL708P-201ENST00000580952 299 ntBASIC7.68□□□□□ -1.18
CCDC61Q9Y6R9 BRDTP1-201ENST00000605735 677 ntBASIC7.68□□□□□ -1.18
CCDC61Q9Y6R9 AC008035.1-201ENST00000607353 448 ntTSL 3 BASIC7.68□□□□□ -1.18
CCDC61Q9Y6R9 AC105265.3-202ENST00000610188 459 ntTSL 5 BASIC7.68□□□□□ -1.18
CCDC61Q9Y6R9 AC126915.2-201ENST00000610957 190 ntBASIC7.68□□□□□ -1.18
CCDC61Q9Y6R9 AC243829.4-201ENST00000620056 701 ntTSL 5 BASIC7.68□□□□□ -1.18
CCDC61Q9Y6R9 ZNF813-201ENST00000396403 6151 ntAPPRIS P1 TSL 3 BASIC7.68□□□□□ -1.18
CCDC61Q9Y6R9 DECR1-215ENST00000522161 1766 ntAPPRIS ALT2 TSL 2 BASIC7.68□□□□□ -1.18
CCDC61Q9Y6R9 PHACTR4-201ENST00000373836 3107 ntAPPRIS P4 TSL 5 BASIC7.68□□□□□ -1.18
CCDC61Q9Y6R9 DCTN5-201ENST00000300087 11011 ntAPPRIS P1 TSL 1 (best) BASIC7.68□□□□□ -1.18
CCDC61Q9Y6R9 SPINK5-202ENST00000359874 3656 ntAPPRIS ALT2 TSL 1 (best) BASIC7.68□□□□□ -1.18
CCDC61Q9Y6R9 BMPR2-204ENST00000638587 3443 ntTSL 5 BASIC7.68□□□□□ -1.18
CCDC61Q9Y6R9 LRRC39-204ENST00000620882 1951 ntTSL 5 BASIC7.68□□□□□ -1.18
CCDC61Q9Y6R9 OR2T5-201ENST00000641363 2525 ntAPPRIS P1 BASIC7.68□□□□□ -1.18
CCDC61Q9Y6R9 FYB1-204ENST00000505428 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC7.67□□□□□ -1.18
CCDC61Q9Y6R9 SATL1-202ENST00000509231 2224 ntTSL 1 (best) BASIC7.67□□□□□ -1.18
CCDC61Q9Y6R9 UBE2WP1-201ENST00000362030 340 ntBASIC7.67□□□□□ -1.18
CCDC61Q9Y6R9 MIR133B-201ENST00000362210 119 ntBASIC7.67□□□□□ -1.18
CCDC61Q9Y6R9 Y_RNA.331-201ENST00000365267 102 ntBASIC7.67□□□□□ -1.18
CCDC61Q9Y6R9 RNA5-8SP5-201ENST00000365304 152 ntBASIC7.67□□□□□ -1.18
CCDC61Q9Y6R9 MIR539-201ENST00000365690 78 ntBASIC7.67□□□□□ -1.18
CCDC61Q9Y6R9 RNU6-637P-201ENST00000384050 107 ntBASIC7.67□□□□□ -1.18
CCDC61Q9Y6R9 RN7SKP125-201ENST00000410481 302 ntBASIC7.67□□□□□ -1.18
CCDC61Q9Y6R9 RN7SKP213-201ENST00000410746 298 ntBASIC7.67□□□□□ -1.18
CCDC61Q9Y6R9 AC092809.3-201ENST00000415453 231 ntBASIC7.67□□□□□ -1.18
CCDC61Q9Y6R9 RPL21P90-201ENST00000415692 466 ntBASIC7.67□□□□□ -1.18
CCDC61Q9Y6R9 CRIP1P1-201ENST00000427567 185 ntBASIC7.67□□□□□ -1.18
CCDC61Q9Y6R9 AL135923.2-201ENST00000435444 501 ntTSL 2 BASIC7.67□□□□□ -1.18
CCDC61Q9Y6R9 AL596266.1-201ENST00000448132 400 ntBASIC7.67□□□□□ -1.18
CCDC61Q9Y6R9 AC114814.3-201ENST00000449362 663 ntTSL 2 BASIC7.67□□□□□ -1.18
CCDC61Q9Y6R9 RNU6-1037P-201ENST00000459571 107 ntBASIC7.67□□□□□ -1.18
CCDC61Q9Y6R9 RPL21P41-201ENST00000459863 264 ntBASIC7.67□□□□□ -1.18
CCDC61Q9Y6R9 AC008481.1-201ENST00000463278 396 ntBASIC7.67□□□□□ -1.18
CCDC61Q9Y6R9 HMGB1P25-201ENST00000468402 607 ntBASIC7.67□□□□□ -1.18
CCDC61Q9Y6R9 RPL7AP6-201ENST00000477943 801 ntBASIC7.67□□□□□ -1.18
CCDC61Q9Y6R9 RPSAP50-201ENST00000481955 852 ntBASIC7.67□□□□□ -1.18
CCDC61Q9Y6R9 AC005840.1-201ENST00000498412 377 ntBASIC7.67□□□□□ -1.18
CCDC61Q9Y6R9 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC7.67□□□□□ -1.18
CCDC61Q9Y6R9 MIR548X2-201ENST00000579776 100 ntBASIC7.67□□□□□ -1.18
CCDC61Q9Y6R9 PRPF19P1-201ENST00000584766 898 ntBASIC7.67□□□□□ -1.18
CCDC61Q9Y6R9 AP001120.2-201ENST00000589395 296 ntTSL 3 BASIC7.67□□□□□ -1.18
CCDC61Q9Y6R9 AL049539.1-201ENST00000611964 459 ntBASIC7.67□□□□□ -1.18
CCDC61Q9Y6R9 CR392039.4-201ENST00000624968 501 ntBASIC7.67□□□□□ -1.18
CCDC61Q9Y6R9 APOL4-203ENST00000352371 3227 ntAPPRIS P4 TSL 1 (best) BASIC7.67□□□□□ -1.18
CCDC61Q9Y6R9 NUMB-201ENST00000355058 3342 ntAPPRIS ALT1 TSL 5 BASIC7.67□□□□□ -1.18
CCDC61Q9Y6R9 AC006145.1-201ENST00000439234 2651 ntTSL 2 BASIC7.67□□□□□ -1.18
CCDC61Q9Y6R9 RAD17P1-201ENST00000418130 2042 ntBASIC7.67□□□□□ -1.18
CCDC61Q9Y6R9 POLK-210ENST00000508526 2019 ntTSL 1 (best) BASIC7.67□□□□□ -1.18
CCDC61Q9Y6R9 PYROXD1-201ENST00000240651 4055 ntAPPRIS P1 TSL 1 (best) BASIC7.67□□□□□ -1.18
CCDC61Q9Y6R9 HHLA1-201ENST00000414222 4105 ntAPPRIS ALT2 TSL 5 BASIC7.67□□□□□ -1.18
CCDC61Q9Y6R9 FOXP2-205ENST00000393489 2285 ntTSL 1 (best) BASIC7.67□□□□□ -1.18
CCDC61Q9Y6R9 LIMCH1-201ENST00000313860 6165 ntAPPRIS P3 TSL 1 (best) BASIC7.67□□□□□ -1.18
CCDC61Q9Y6R9 NRG3-202ENST00000372142 3136 ntAPPRIS ALT2 TSL 1 (best) BASIC7.67□□□□□ -1.18
CCDC61Q9Y6R9 RAPH1-207ENST00000423104 1860 ntAPPRIS ALT2 TSL 5 BASIC7.66□□□□□ -1.18
CCDC61Q9Y6R9 LSAMP-207ENST00000539563 8821 ntTSL 3 BASIC7.66□□□□□ -1.18
CCDC61Q9Y6R9 MYBPC1-216ENST00000550270 3426 ntAPPRIS ALT2 TSL 5 BASIC7.66□□□□□ -1.18
CCDC61Q9Y6R9 CLCN3-201ENST00000347613 3635 ntAPPRIS P4 TSL 1 (best) BASIC7.66□□□□□ -1.18
CCDC61Q9Y6R9 CEP250-202ENST00000397527 15703 ntAPPRIS P1 TSL 5 BASIC7.66□□□□□ -1.18
CCDC61Q9Y6R9 RPL23P2-201ENST00000320371 421 ntBASIC7.66□□□□□ -1.18
CCDC61Q9Y6R9 RNU6-312P-201ENST00000364629 107 ntBASIC7.66□□□□□ -1.18
CCDC61Q9Y6R9 AC019155.1-201ENST00000382242 574 ntBASIC7.66□□□□□ -1.18
CCDC61Q9Y6R9 RNU6-1289P-201ENST00000384431 106 ntBASIC7.66□□□□□ -1.18
CCDC61Q9Y6R9 AL009179.1-201ENST00000406085 265 ntBASIC7.66□□□□□ -1.18
CCDC61Q9Y6R9 AC079809.1-201ENST00000415468 276 ntBASIC7.66□□□□□ -1.18
CCDC61Q9Y6R9 AC007161.1-204ENST00000423039 460 ntBASIC7.66□□□□□ -1.18
CCDC61Q9Y6R9 AC108075.1-201ENST00000424692 529 ntBASIC7.66□□□□□ -1.18
CCDC61Q9Y6R9 TSSK4-203ENST00000428351 576 ntTSL 2 BASIC7.66□□□□□ -1.18
CCDC61Q9Y6R9 AC018742.1-202ENST00000457901 504 ntTSL 3 BASIC7.66□□□□□ -1.18
CCDC61Q9Y6R9 SNORD2.1-201ENST00000458762 69 ntBASIC7.66□□□□□ -1.18
CCDC61Q9Y6R9 IGKV2-30-201ENST00000468494 390 ntAPPRIS P1 BASIC7.66□□□□□ -1.18
CCDC61Q9Y6R9 AC034223.1-201ENST00000511054 599 ntTSL 3 BASIC7.66□□□□□ -1.18
CCDC61Q9Y6R9 AC092326.1-201ENST00000567465 674 ntTSL 3 BASIC7.66□□□□□ -1.18
CCDC61Q9Y6R9 RDM1-226ENST00000619828 687 ntTSL 1 (best) BASIC7.66□□□□□ -1.18
CCDC61Q9Y6R9 C2orf83-206ENST00000642055 453 ntAPPRIS P3 BASIC7.66□□□□□ -1.18
CCDC61Q9Y6R9 ZNF347-202ENST00000452676 4553 ntAPPRIS ALT2 TSL 2 BASIC7.66□□□□□ -1.18
CCDC61Q9Y6R9 PRLR-201ENST00000231423 1679 ntTSL 1 (best) BASIC7.66□□□□□ -1.18
CCDC61Q9Y6R9 AC018462.1-201ENST00000425966 1684 ntTSL 1 (best) BASIC7.66□□□□□ -1.18
CCDC61Q9Y6R9 C1orf27-201ENST00000287859 3792 ntAPPRIS P1 TSL 1 (best) BASIC7.66□□□□□ -1.18
CCDC61Q9Y6R9 LINC01450-201ENST00000443406 3263 ntTSL 1 (best) BASIC7.65□□□□□ -1.18
CCDC61Q9Y6R9 POLR1D-218ENST00000636817 4592 ntTSL 5 BASIC7.65□□□□□ -1.18
CCDC61Q9Y6R9 OLFM4-201ENST00000219022 2897 ntAPPRIS P1 TSL 1 (best) BASIC7.65□□□□□ -1.18
CCDC61Q9Y6R9 RPL9P7-201ENST00000330965 580 ntBASIC7.65□□□□□ -1.18
CCDC61Q9Y6R9 LRRIQ3-201ENST00000354431 2849 ntAPPRIS P2 TSL 5 BASIC7.65□□□□□ -1.18
CCDC61Q9Y6R9 GLRA2-202ENST00000355020 1730 ntAPPRIS ALT1 TSL 1 (best) BASIC7.65□□□□□ -1.18
CCDC61Q9Y6R9 ESRRG-205ENST00000366937 5365 ntTSL 1 (best) BASIC7.65□□□□□ -1.18
CCDC61Q9Y6R9 AL133270.1-201ENST00000402635 279 ntBASIC7.65□□□□□ -1.18
CCDC61Q9Y6R9 AL513043.1-201ENST00000439124 535 ntBASIC7.65□□□□□ -1.18
CCDC61Q9Y6R9 RPL12P3-201ENST00000440080 396 ntBASIC7.65□□□□□ -1.18
CCDC61Q9Y6R9 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC7.65□□□□□ -1.18
CCDC61Q9Y6R9 ZNF780A-204ENST00000455521 3600 ntAPPRIS ALT2 TSL 5 BASIC7.65□□□□□ -1.18
Retrieved 100 of 98,524 protein–RNA pairs in 97 ms