Protein–RNA interactions for Protein: Q9Y6I4

USP3, Ubiquitin carboxyl-terminal hydrolase 3, humanhuman

Predictions only

Length 520 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP3Q9Y6I4 PWRN1-209ENST00000568019 359 ntTSL 3 BASIC5.59□□□□□ -1.51
USP3Q9Y6I4 MIR5692A1-201ENST00000580523 69 ntBASIC5.59□□□□□ -1.51
USP3Q9Y6I4 AL034351.1-201ENST00000605288 668 ntBASIC5.59□□□□□ -1.51
USP3Q9Y6I4 AC012603.1-201ENST00000606424 528 ntBASIC5.59□□□□□ -1.51
USP3Q9Y6I4 AL591516.1-201ENST00000611326 274 ntBASIC5.59□□□□□ -1.51
USP3Q9Y6I4 LINC02355-201ENST00000503100 2520 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
USP3Q9Y6I4 STRBP-204ENST00000447404 6161 ntAPPRIS P1 TSL 2 BASIC5.59□□□□□ -1.51
USP3Q9Y6I4 NAV3-201ENST00000397909 9821 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
USP3Q9Y6I4 OR52A5-202ENST00000642125 3993 ntAPPRIS P1 BASIC5.59□□□□□ -1.51
USP3Q9Y6I4 SERPINB7-202ENST00000398019 2203 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.52
USP3Q9Y6I4 GTDC1-207ENST00000409298 2209 ntTSL 5 BASIC5.59□□□□□ -1.52
USP3Q9Y6I4 MRPL35-202ENST00000337109 3727 ntAPPRIS P4 TSL 1 (best) BASIC5.58□□□□□ -1.52
USP3Q9Y6I4 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC5.58□□□□□ -1.52
USP3Q9Y6I4 AC005162.3-201ENST00000609389 3695 ntTSL 5 BASIC5.58□□□□□ -1.52
USP3Q9Y6I4 VPS41-203ENST00000395969 3181 ntTSL 5 BASIC5.58□□□□□ -1.52
USP3Q9Y6I4 AGO2-201ENST00000220592 14581 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
USP3Q9Y6I4 KIF15-203ENST00000425755 3460 ntTSL 5 BASIC5.58□□□□□ -1.52
USP3Q9Y6I4 U3.7-201ENST00000363668 216 ntBASIC5.58□□□□□ -1.52
USP3Q9Y6I4 RNU6-200P-201ENST00000364743 107 ntBASIC5.58□□□□□ -1.52
USP3Q9Y6I4 SNORA23-201ENST00000365128 182 ntBASIC5.58□□□□□ -1.52
USP3Q9Y6I4 Y_RNA.785-201ENST00000384290 109 ntBASIC5.58□□□□□ -1.52
USP3Q9Y6I4 Y_RNA.555-201ENST00000384673 110 ntBASIC5.58□□□□□ -1.52
USP3Q9Y6I4 MT-TW-201ENST00000387382 68 ntBASIC5.58□□□□□ -1.52
USP3Q9Y6I4 AL139039.1-201ENST00000401900 692 ntBASIC5.58□□□□□ -1.52
USP3Q9Y6I4 MIR1250-201ENST00000408098 113 ntBASIC5.58□□□□□ -1.52
USP3Q9Y6I4 RNU6-1156P-201ENST00000410365 100 ntBASIC5.58□□□□□ -1.52
USP3Q9Y6I4 RNU6-174P-201ENST00000410406 106 ntBASIC5.58□□□□□ -1.52
USP3Q9Y6I4 RNU2-38P-201ENST00000410856 79 ntBASIC5.58□□□□□ -1.52
USP3Q9Y6I4 AL160275.3-201ENST00000423876 471 ntBASIC5.58□□□□□ -1.52
USP3Q9Y6I4 RPL30P3-201ENST00000424262 333 ntBASIC5.58□□□□□ -1.52
USP3Q9Y6I4 C6orf52-203ENST00000426700 493 ntAPPRIS P2 TSL 2 BASIC5.58□□□□□ -1.52
USP3Q9Y6I4 AL139148.1-201ENST00000427122 680 ntBASIC5.58□□□□□ -1.52
USP3Q9Y6I4 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC5.58□□□□□ -1.52
USP3Q9Y6I4 BX276092.4-201ENST00000452056 248 ntBASIC5.58□□□□□ -1.52
USP3Q9Y6I4 RNU7-187P-201ENST00000458985 68 ntBASIC5.58□□□□□ -1.52
USP3Q9Y6I4 RN7SL222P-201ENST00000476452 299 ntBASIC5.58□□□□□ -1.52
USP3Q9Y6I4 AC016651.1-201ENST00000502680 822 ntTSL 3 BASIC5.58□□□□□ -1.52
USP3Q9Y6I4 AC105758.1-201ENST00000506038 399 ntBASIC5.58□□□□□ -1.52
USP3Q9Y6I4 SNORA40.15-201ENST00000516884 107 ntBASIC5.58□□□□□ -1.52
USP3Q9Y6I4 RN7SKP60-201ENST00000516985 239 ntBASIC5.58□□□□□ -1.52
USP3Q9Y6I4 ERHP1-201ENST00000523006 310 ntBASIC5.58□□□□□ -1.52
USP3Q9Y6I4 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC5.58□□□□□ -1.52
USP3Q9Y6I4 AC009145.1-201ENST00000563230 433 ntTSL 3 BASIC5.58□□□□□ -1.52
USP3Q9Y6I4 AC092138.1-201ENST00000568659 472 ntTSL 2 BASIC5.58□□□□□ -1.52
USP3Q9Y6I4 AC067852.3-201ENST00000589177 561 ntBASIC5.58□□□□□ -1.52
USP3Q9Y6I4 VN1R91P-201ENST00000594377 169 ntBASIC5.58□□□□□ -1.52
USP3Q9Y6I4 AP001172.2-201ENST00000602454 467 ntTSL 5 BASIC5.58□□□□□ -1.52
USP3Q9Y6I4 AC004982.1-201ENST00000608770 1655 ntTSL 4 BASIC5.58□□□□□ -1.52
USP3Q9Y6I4 MROH2B-203ENST00000506092 3745 ntTSL 2 BASIC5.58□□□□□ -1.52
USP3Q9Y6I4 AC109446.4-201ENST00000623235 2755 ntBASIC5.58□□□□□ -1.52
USP3Q9Y6I4 UEVLD-208ENST00000535484 1963 ntTSL 2 BASIC5.58□□□□□ -1.52
USP3Q9Y6I4 GABRA2-206ENST00000507460 5812 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
USP3Q9Y6I4 OR10G7-202ENST00000641585 3449 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
USP3Q9Y6I4 ATF7IP-214ENST00000540793 4142 ntAPPRIS P3 TSL 1 (best) BASIC5.58□□□□□ -1.52
USP3Q9Y6I4 B3GALT2-201ENST00000367434 3274 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
USP3Q9Y6I4 OR2J1-202ENST00000641659 2144 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
USP3Q9Y6I4 D21S2088E-201ENST00000262354 1725 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
USP3Q9Y6I4 AL672167.1-205ENST00000641112 3080 ntBASIC5.57□□□□□ -1.52
USP3Q9Y6I4 SEC31A-217ENST00000505984 3596 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
USP3Q9Y6I4 ATP1B4-201ENST00000218008 3868 ntAPPRIS ALT1 TSL 1 (best) BASIC5.57□□□□□ -1.52
USP3Q9Y6I4 AIMP1-202ENST00000394701 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC5.57□□□□□ -1.52
USP3Q9Y6I4 ZBTB8A-202ENST00000373510 7075 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
USP3Q9Y6I4 MAX-203ENST00000341653 330 ntTSL 2 BASIC5.57□□□□□ -1.52
USP3Q9Y6I4 Y_RNA.126-201ENST00000363382 111 ntBASIC5.57□□□□□ -1.52
USP3Q9Y6I4 Y_RNA.214-201ENST00000364201 112 ntBASIC5.57□□□□□ -1.52
USP3Q9Y6I4 Y_RNA.376-201ENST00000365638 108 ntBASIC5.57□□□□□ -1.52
USP3Q9Y6I4 Y_RNA.483-201ENST00000384380 101 ntBASIC5.57□□□□□ -1.52
USP3Q9Y6I4 MT-TC-201ENST00000387405 66 ntBASIC5.57□□□□□ -1.52
USP3Q9Y6I4 AC110754.1-201ENST00000399740 601 ntBASIC5.57□□□□□ -1.52
USP3Q9Y6I4 DEFB116-201ENST00000400549 309 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
USP3Q9Y6I4 AL137014.1-201ENST00000420490 1226 ntBASIC5.57□□□□□ -1.52
USP3Q9Y6I4 SPATA13-AS1-201ENST00000430733 433 ntTSL 3 BASIC5.57□□□□□ -1.52
USP3Q9Y6I4 HMGB1P25-201ENST00000468402 607 ntBASIC5.57□□□□□ -1.52
USP3Q9Y6I4 AC004069.1-201ENST00000504082 549 ntTSL 4 BASIC5.57□□□□□ -1.52
USP3Q9Y6I4 HMGB3P17-201ENST00000504195 649 ntBASIC5.57□□□□□ -1.52
USP3Q9Y6I4 AC008574.1-201ENST00000514240 433 ntTSL 3 BASIC5.57□□□□□ -1.52
USP3Q9Y6I4 CDH12P4-201ENST00000517835 295 ntBASIC5.57□□□□□ -1.52
USP3Q9Y6I4 CDH12P3-201ENST00000517935 295 ntBASIC5.57□□□□□ -1.52
USP3Q9Y6I4 CDH12P1-201ENST00000518435 295 ntBASIC5.57□□□□□ -1.52
USP3Q9Y6I4 AP000859.1-201ENST00000525536 307 ntBASIC5.57□□□□□ -1.52
USP3Q9Y6I4 KLHL23-207ENST00000602521 630 ntTSL 3 BASIC5.57□□□□□ -1.52
USP3Q9Y6I4 AC012119.1-201ENST00000603184 222 ntBASIC5.57□□□□□ -1.52
USP3Q9Y6I4 ELOCP5-201ENST00000604924 333 ntBASIC5.57□□□□□ -1.52
USP3Q9Y6I4 AC096772.1-201ENST00000609146 564 ntBASIC5.57□□□□□ -1.52
USP3Q9Y6I4 AC126915.2-201ENST00000610957 190 ntBASIC5.57□□□□□ -1.52
USP3Q9Y6I4 AC105265.4-201ENST00000618391 306 ntTSL 5 BASIC5.57□□□□□ -1.52
USP3Q9Y6I4 KCNJ16-202ENST00000392670 4009 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
USP3Q9Y6I4 PABPC1P7-201ENST00000413177 1513 ntBASIC5.57□□□□□ -1.52
USP3Q9Y6I4 KLHL5-202ENST00000261426 3300 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
USP3Q9Y6I4 SCN2A-202ENST00000375427 8553 ntAPPRIS ALT1 TSL 5 BASIC5.57□□□□□ -1.52
USP3Q9Y6I4 NSD1-201ENST00000347982 7688 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
USP3Q9Y6I4 GTDC1-204ENST00000392869 10514 ntAPPRIS P1 TSL 5 BASIC5.57□□□□□ -1.52
USP3Q9Y6I4 OBSCN-201ENST00000284548 20432 ntTSL 2 BASIC5.57□□□□□ -1.52
USP3Q9Y6I4 FILIP1-202ENST00000370020 4051 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
USP3Q9Y6I4 N4BP2L2-204ENST00000399396 2872 ntTSL 5 BASIC5.57□□□□□ -1.52
USP3Q9Y6I4 PDE5A-203ENST00000394439 6770 ntAPPRIS ALT2 TSL 5 BASIC5.56□□□□□ -1.52
USP3Q9Y6I4 AL157938.3-201ENST00000502188 3084 ntTSL 4 BASIC5.56□□□□□ -1.52
USP3Q9Y6I4 SNX10-202ENST00000396376 2491 ntAPPRIS P2 TSL 1 (best) BASIC5.56□□□□□ -1.52
USP3Q9Y6I4 DGKB-203ENST00000403951 6917 ntAPPRIS P2 TSL 5 BASIC5.56□□□□□ -1.52
USP3Q9Y6I4 DNAJC2-201ENST00000249270 1846 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 130.4 ms