Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 Y_RNA.665-201ENST00000516177 98 ntBASIC5.85□□□□□ -1.47
CCDC87Q9NVE4 AC109466.1-211ENST00000519327 496 ntTSL 3 BASIC5.85□□□□□ -1.47
CCDC87Q9NVE4 OR8R1P-201ENST00000543943 764 ntBASIC5.85□□□□□ -1.47
CCDC87Q9NVE4 AL133153.1-201ENST00000557756 303 ntBASIC5.85□□□□□ -1.47
CCDC87Q9NVE4 AC091231.1-201ENST00000558443 391 ntTSL 5 BASIC5.85□□□□□ -1.47
CCDC87Q9NVE4 AC020661.2-201ENST00000560114 134 ntBASIC5.85□□□□□ -1.47
CCDC87Q9NVE4 AC093249.1-201ENST00000567049 203 ntBASIC5.85□□□□□ -1.47
CCDC87Q9NVE4 AC004147.1-201ENST00000580658 299 ntTSL 3 BASIC5.85□□□□□ -1.47
CCDC87Q9NVE4 LAMTOR5-AS1-217ENST00000608152 407 ntTSL 5 BASIC5.85□□□□□ -1.47
CCDC87Q9NVE4 SYTL2-217ENST00000528231 3536 ntAPPRIS ALT1 TSL 1 (best) BASIC5.85□□□□□ -1.47
CCDC87Q9NVE4 ADAM7-202ENST00000380789 3358 ntAPPRIS ALT2 TSL 5 BASIC5.85□□□□□ -1.47
CCDC87Q9NVE4 AL136164.3-201ENST00000624429 3978 ntBASIC5.85□□□□□ -1.47
CCDC87Q9NVE4 OR12D1-207ENST00000514827 1712 ntAPPRIS P1 BASIC5.85□□□□□ -1.47
CCDC87Q9NVE4 ZNF567-203ENST00000585696 3734 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
CCDC87Q9NVE4 CFAP70-203ENST00000355577 3691 ntTSL 5 BASIC5.85□□□□□ -1.47
CCDC87Q9NVE4 POLR2B-203ENST00000431623 3666 ntTSL 2 BASIC5.85□□□□□ -1.47
CCDC87Q9NVE4 CD226-201ENST00000280200 12319 ntAPPRIS P2 TSL 1 (best) BASIC5.85□□□□□ -1.47
CCDC87Q9NVE4 MTUS1-203ENST00000381861 3996 ntAPPRIS P4 TSL 2 BASIC5.84□□□□□ -1.47
CCDC87Q9NVE4 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC5.84□□□□□ -1.47
CCDC87Q9NVE4 PLD1-203ENST00000356327 5855 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
CCDC87Q9NVE4 LRRC49-222ENST00000560158 1898 ntTSL 5 BASIC5.84□□□□□ -1.47
CCDC87Q9NVE4 U3.12-201ENST00000364498 214 ntBASIC5.84□□□□□ -1.47
CCDC87Q9NVE4 AL359634.1-202ENST00000404721 284 ntBASIC5.84□□□□□ -1.47
CCDC87Q9NVE4 RNA5SP317-201ENST00000410176 116 ntBASIC5.84□□□□□ -1.47
CCDC87Q9NVE4 RNA5SP311-201ENST00000411290 116 ntBASIC5.84□□□□□ -1.47
CCDC87Q9NVE4 AC079809.1-201ENST00000415468 276 ntBASIC5.84□□□□□ -1.47
CCDC87Q9NVE4 AL451107.1-201ENST00000416310 408 ntTSL 2 BASIC5.84□□□□□ -1.47
CCDC87Q9NVE4 AL512658.1-202ENST00000433486 400 ntTSL 3 BASIC5.84□□□□□ -1.47
CCDC87Q9NVE4 AL353597.2-202ENST00000434901 373 ntBASIC5.84□□□□□ -1.47
CCDC87Q9NVE4 GTF2IP13-201ENST00000438487 386 ntBASIC5.84□□□□□ -1.47
CCDC87Q9NVE4 CYCSP24-201ENST00000445119 316 ntBASIC5.84□□□□□ -1.47
CCDC87Q9NVE4 HSFY6P-201ENST00000445573 403 ntBASIC5.84□□□□□ -1.47
CCDC87Q9NVE4 RPL36AP13-201ENST00000457490 317 ntBASIC5.84□□□□□ -1.47
CCDC87Q9NVE4 AC010273.2-201ENST00000479830 438 ntTSL 5 BASIC5.84□□□□□ -1.47
CCDC87Q9NVE4 AC008957.1-201ENST00000510740 478 ntTSL 3 BASIC5.84□□□□□ -1.47
CCDC87Q9NVE4 IGKV1OR2-1-201ENST00000514060 354 ntBASIC5.84□□□□□ -1.47
CCDC87Q9NVE4 RNA5SP315-201ENST00000516340 116 ntBASIC5.84□□□□□ -1.47
CCDC87Q9NVE4 RNU6-798P-201ENST00000516912 103 ntBASIC5.84□□□□□ -1.47
CCDC87Q9NVE4 RNA5SP312-201ENST00000517068 116 ntBASIC5.84□□□□□ -1.47
CCDC87Q9NVE4 RPL7P20-201ENST00000520308 745 ntBASIC5.84□□□□□ -1.47
CCDC87Q9NVE4 AP003730.1-201ENST00000524605 285 ntBASIC5.84□□□□□ -1.47
CCDC87Q9NVE4 MIR4424-201ENST00000585257 86 ntBASIC5.84□□□□□ -1.47
CCDC87Q9NVE4 AC024075.3-201ENST00000601687 453 ntTSL 5 BASIC5.84□□□□□ -1.47
CCDC87Q9NVE4 IGKV1OR2-118-201ENST00000603238 347 ntBASIC5.84□□□□□ -1.47
CCDC87Q9NVE4 AL591034.3-201ENST00000605511 685 ntBASIC5.84□□□□□ -1.47
CCDC87Q9NVE4 AC006133.1-201ENST00000617106 264 ntBASIC5.84□□□□□ -1.47
CCDC87Q9NVE4 U6.114-201ENST00000636407 96 ntBASIC5.84□□□□□ -1.47
CCDC87Q9NVE4 NXPE1-204ENST00000536271 2289 ntTSL 1 (best) BASIC5.84□□□□□ -1.47
CCDC87Q9NVE4 FUT9-201ENST00000302103 12783 ntAPPRIS P1 TSL 1 (best) BASIC5.84□□□□□ -1.47
CCDC87Q9NVE4 TAB3P1-202ENST00000452645 1634 ntBASIC5.84□□□□□ -1.47
CCDC87Q9NVE4 CEP162-207ENST00000617909 5095 ntTSL 5 BASIC5.84□□□□□ -1.48
CCDC87Q9NVE4 CNGA1-209ENST00000544810 2722 ntAPPRIS ALT2 TSL 5 BASIC5.83□□□□□ -1.48
CCDC87Q9NVE4 MYBPC1-205ENST00000536007 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC5.83□□□□□ -1.48
CCDC87Q9NVE4 MYBPC1-206ENST00000541119 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC5.83□□□□□ -1.48
CCDC87Q9NVE4 LINC00862-201ENST00000367355 1417 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
CCDC87Q9NVE4 DENND4A-201ENST00000431932 5875 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
CCDC87Q9NVE4 ABCB5-202ENST00000404938 5811 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
CCDC87Q9NVE4 KIF3A-203ENST00000403231 2181 ntTSL 2 BASIC5.83□□□□□ -1.48
CCDC87Q9NVE4 LARP1BP1-201ENST00000506036 1359 ntBASIC5.83□□□□□ -1.48
CCDC87Q9NVE4 DTNA-229ENST00000598142 2509 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
CCDC87Q9NVE4 C9orf153-204ENST00000613665 1738 ntAPPRIS P2 TSL 2 BASIC5.83□□□□□ -1.48
CCDC87Q9NVE4 C12orf60-201ENST00000330828 1684 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
CCDC87Q9NVE4 Y_RNA.259-201ENST00000364619 101 ntBASIC5.83□□□□□ -1.48
CCDC87Q9NVE4 Y_RNA.373-201ENST00000365600 103 ntBASIC5.83□□□□□ -1.48
CCDC87Q9NVE4 IARS-201ENST00000375627 697 ntTSL 3 BASIC5.83□□□□□ -1.48
CCDC87Q9NVE4 RNU6-146P-201ENST00000384602 108 ntBASIC5.83□□□□□ -1.48
CCDC87Q9NVE4 AP000580.1-201ENST00000404439 358 ntBASIC5.83□□□□□ -1.48
CCDC87Q9NVE4 U3.35-201ENST00000408405 208 ntBASIC5.83□□□□□ -1.48
CCDC87Q9NVE4 BEND7P1-201ENST00000422058 457 ntBASIC5.83□□□□□ -1.48
CCDC87Q9NVE4 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC5.83□□□□□ -1.48
CCDC87Q9NVE4 AL136234.1-201ENST00000437080 349 ntTSL 2 BASIC5.83□□□□□ -1.48
CCDC87Q9NVE4 RPL35AP21-201ENST00000437667 333 ntBASIC5.83□□□□□ -1.48
CCDC87Q9NVE4 SNRPFP3-201ENST00000457792 225 ntBASIC5.83□□□□□ -1.48
CCDC87Q9NVE4 AL390961.3-201ENST00000458171 485 ntTSL 5 BASIC5.83□□□□□ -1.48
CCDC87Q9NVE4 ST13P14-201ENST00000474095 734 ntBASIC5.83□□□□□ -1.48
CCDC87Q9NVE4 AC068633.1-201ENST00000482142 787 ntTSL 5 BASIC5.83□□□□□ -1.48
CCDC87Q9NVE4 AC092436.1-201ENST00000506450 503 ntBASIC5.83□□□□□ -1.48
CCDC87Q9NVE4 AP001961.1-201ENST00000515782 526 ntTSL 3 BASIC5.83□□□□□ -1.48
CCDC87Q9NVE4 HMGN1P28-201ENST00000521340 364 ntBASIC5.83□□□□□ -1.48
CCDC87Q9NVE4 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC5.83□□□□□ -1.48
CCDC87Q9NVE4 DEFB109D-201ENST00000529497 240 ntBASIC5.83□□□□□ -1.48
CCDC87Q9NVE4 AC103843.2-201ENST00000530523 682 ntBASIC5.83□□□□□ -1.48
CCDC87Q9NVE4 AC010197.1-201ENST00000541860 578 ntTSL 4 BASIC5.83□□□□□ -1.48
CCDC87Q9NVE4 CLEC2D-214ENST00000543300 399 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
CCDC87Q9NVE4 CLEC2D-216ENST00000545918 288 ntTSL 1 (best) BASIC5.83□□□□□ -1.48
CCDC87Q9NVE4 SETP7-201ENST00000552169 453 ntBASIC5.83□□□□□ -1.48
CCDC87Q9NVE4 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC5.83□□□□□ -1.48
CCDC87Q9NVE4 AC109630.1-202ENST00000560552 579 ntTSL 4 BASIC5.83□□□□□ -1.48
CCDC87Q9NVE4 MIR4703-201ENST00000577728 79 ntBASIC5.83□□□□□ -1.48
CCDC87Q9NVE4 AC006504.6-201ENST00000590142 199 ntBASIC5.83□□□□□ -1.48
CCDC87Q9NVE4 AC022150.3-201ENST00000599143 880 ntTSL 5 BASIC5.83□□□□□ -1.48
CCDC87Q9NVE4 LINC00993-204ENST00000606476 500 ntTSL 5 BASIC5.83□□□□□ -1.48
CCDC87Q9NVE4 AC091925.2-201ENST00000625059 256 ntBASIC5.83□□□□□ -1.48
CCDC87Q9NVE4 MIR3653-201ENST00000625572 110 ntBASIC5.83□□□□□ -1.48
CCDC87Q9NVE4 SOX2-OT-255ENST00000630150 649 ntTSL 5 BASIC5.83□□□□□ -1.48
CCDC87Q9NVE4 AC073172.1-201ENST00000636967 851 ntTSL 5 BASIC5.83□□□□□ -1.48
CCDC87Q9NVE4 MIR492-201ENST00000638676 116 ntBASIC5.83□□□□□ -1.48
CCDC87Q9NVE4 PIGX-211ENST00000639474 777 ntAPPRIS P3 TSL 1 (best) BASIC5.83□□□□□ -1.48
CCDC87Q9NVE4 PIK3C3-217ENST00000639914 2722 ntTSL 5 BASIC5.83□□□□□ -1.48
CCDC87Q9NVE4 GABRG1-201ENST00000295452 6785 ntAPPRIS P1 TSL 1 (best) BASIC5.83□□□□□ -1.48
Retrieved 100 of 98,524 protein–RNA pairs in 169.5 ms