Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 AL360267.1-201ENST00000607309 666 ntTSL 4 BASIC5.4□□□□□ -1.54
USHBP1Q8N6Y0 ABCA8-215ENST00000615593 3264 ntTSL 5 BASIC5.4□□□□□ -1.55
USHBP1Q8N6Y0 POLR2B-201ENST00000314595 3748 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
USHBP1Q8N6Y0 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
USHBP1Q8N6Y0 PIGN-240ENST00000639912 6530 ntTSL 5 BASIC5.4□□□□□ -1.55
USHBP1Q8N6Y0 TRGC1-201ENST00000443402 2730 ntAPPRIS P1 BASIC5.39□□□□□ -1.55
USHBP1Q8N6Y0 THUMPD3P1-201ENST00000506556 1480 ntBASIC5.39□□□□□ -1.55
USHBP1Q8N6Y0 LGI1-228ENST00000637689 1802 ntTSL 5 BASIC5.39□□□□□ -1.55
USHBP1Q8N6Y0 FER-202ENST00000438717 1531 ntTSL 2 BASIC5.39□□□□□ -1.55
USHBP1Q8N6Y0 GOLPH3L-201ENST00000271732 2999 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
USHBP1Q8N6Y0 FANCI-202ENST00000310775 4743 ntAPPRIS ALT2 TSL 1 (best) BASIC5.39□□□□□ -1.55
USHBP1Q8N6Y0 PREPL-205ENST00000409411 4725 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
USHBP1Q8N6Y0 EOGT-210ENST00000615922 1931 ntBASIC5.39□□□□□ -1.55
USHBP1Q8N6Y0 FANCD2-202ENST00000383807 5102 ntAPPRIS ALT2 TSL 1 (best) BASIC5.39□□□□□ -1.55
USHBP1Q8N6Y0 U2SURP-208ENST00000473835 7276 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
USHBP1Q8N6Y0 KIAA1456-203ENST00000524591 9587 ntAPPRIS P1 TSL 5 BASIC5.39□□□□□ -1.55
USHBP1Q8N6Y0 RNU5E-1-201ENST00000362477 120 ntBASIC5.39□□□□□ -1.55
USHBP1Q8N6Y0 RNU6-223P-201ENST00000362830 107 ntBASIC5.39□□□□□ -1.55
USHBP1Q8N6Y0 RNU6-359P-201ENST00000365466 108 ntBASIC5.39□□□□□ -1.55
USHBP1Q8N6Y0 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC5.39□□□□□ -1.55
USHBP1Q8N6Y0 RNU6-1158P-201ENST00000391167 107 ntBASIC5.39□□□□□ -1.55
USHBP1Q8N6Y0 MDM2-208ENST00000393410 732 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
USHBP1Q8N6Y0 AL133384.1-201ENST00000412744 351 ntBASIC5.39□□□□□ -1.55
USHBP1Q8N6Y0 AC009505.1-201ENST00000413151 424 ntTSL 2 BASIC5.39□□□□□ -1.55
USHBP1Q8N6Y0 AC104462.1-201ENST00000414565 447 ntTSL 2 BASIC5.39□□□□□ -1.55
USHBP1Q8N6Y0 MTCO3P12-201ENST00000416718 547 ntBASIC5.39□□□□□ -1.55
USHBP1Q8N6Y0 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC5.39□□□□□ -1.55
USHBP1Q8N6Y0 ELOCP4-201ENST00000420090 333 ntBASIC5.39□□□□□ -1.55
USHBP1Q8N6Y0 RBM6-203ENST00000421682 684 ntTSL 2 BASIC5.39□□□□□ -1.55
USHBP1Q8N6Y0 NOTCH2P1-201ENST00000443481 624 ntBASIC5.39□□□□□ -1.55
USHBP1Q8N6Y0 AL031584.1-201ENST00000447169 754 ntBASIC5.39□□□□□ -1.55
USHBP1Q8N6Y0 AC098484.1-201ENST00000447572 484 ntTSL 3 BASIC5.39□□□□□ -1.55
USHBP1Q8N6Y0 AL121877.1-201ENST00000453704 622 ntBASIC5.39□□□□□ -1.55
USHBP1Q8N6Y0 PABPC1P3-201ENST00000469174 459 ntBASIC5.39□□□□□ -1.55
USHBP1Q8N6Y0 AC096576.1-201ENST00000489014 359 ntBASIC5.39□□□□□ -1.55
USHBP1Q8N6Y0 AP001025.2-201ENST00000490908 477 ntBASIC5.39□□□□□ -1.55
USHBP1Q8N6Y0 TNFAIP8-205ENST00000504642 711 ntTSL 3 BASIC5.39□□□□□ -1.55
USHBP1Q8N6Y0 LINC02112-202ENST00000512976 464 ntTSL 3 BASIC5.39□□□□□ -1.55
USHBP1Q8N6Y0 PCAT4-202ENST00000514836 373 ntTSL 3 BASIC5.39□□□□□ -1.55
USHBP1Q8N6Y0 LINC02492-204ENST00000515660 584 ntTSL 2 BASIC5.39□□□□□ -1.55
USHBP1Q8N6Y0 RNU6-513P-201ENST00000516104 104 ntBASIC5.39□□□□□ -1.55
USHBP1Q8N6Y0 snoU109.6-201ENST00000516831 118 ntBASIC5.39□□□□□ -1.55
USHBP1Q8N6Y0 RN7SKP96-201ENST00000516948 297 ntBASIC5.39□□□□□ -1.55
USHBP1Q8N6Y0 AC023442.3-203ENST00000530946 533 ntTSL 4 BASIC5.39□□□□□ -1.55
USHBP1Q8N6Y0 AC084838.1-201ENST00000532973 312 ntTSL 3 BASIC5.39□□□□□ -1.55
USHBP1Q8N6Y0 LINC00944-202ENST00000540684 888 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
USHBP1Q8N6Y0 AC006518.2-202ENST00000544947 297 ntTSL 2 BASIC5.39□□□□□ -1.55
USHBP1Q8N6Y0 RPL23AP87-202ENST00000573039 466 ntBASIC5.39□□□□□ -1.55
USHBP1Q8N6Y0 AP005271.1-201ENST00000582470 412 ntTSL 3 BASIC5.39□□□□□ -1.55
USHBP1Q8N6Y0 AC005255.1-201ENST00000593748 216 ntBASIC5.39□□□□□ -1.55
USHBP1Q8N6Y0 AC023813.4-201ENST00000607580 580 ntBASIC5.39□□□□□ -1.55
USHBP1Q8N6Y0 AL138721.1-201ENST00000616756 179 ntBASIC5.39□□□□□ -1.55
USHBP1Q8N6Y0 CCT7-217ENST00000626868 249 ntTSL 5 BASIC5.39□□□□□ -1.55
USHBP1Q8N6Y0 AC100810.6-201ENST00000638068 285 ntBASIC5.39□□□□□ -1.55
USHBP1Q8N6Y0 ITCH-202ENST00000374864 6401 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
USHBP1Q8N6Y0 PLCB4-206ENST00000414679 3947 ntAPPRIS ALT1 TSL 5 BASIC5.39□□□□□ -1.55
USHBP1Q8N6Y0 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC5.39□□□□□ -1.55
USHBP1Q8N6Y0 SKP1-202ENST00000353411 9474 ntAPPRIS P4 TSL 1 (best) BASIC5.39□□□□□ -1.55
USHBP1Q8N6Y0 OSBPL6-201ENST00000190611 10513 ntAPPRIS P3 TSL 1 (best) BASIC5.39□□□□□ -1.55
USHBP1Q8N6Y0 ZNF85-201ENST00000300540 1531 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
USHBP1Q8N6Y0 EIF4E3-202ENST00000389826 6083 ntTSL 5 BASIC5.38□□□□□ -1.55
USHBP1Q8N6Y0 RALGAPA1-204ENST00000553892 6271 ntTSL 5 BASIC5.38□□□□□ -1.55
USHBP1Q8N6Y0 FAM169A-203ENST00000510496 5810 ntTSL 5 BASIC5.38□□□□□ -1.55
USHBP1Q8N6Y0 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
USHBP1Q8N6Y0 Y_RNA.67-201ENST00000362870 100 ntBASIC5.38□□□□□ -1.55
USHBP1Q8N6Y0 RNA5SP22-201ENST00000365393 109 ntBASIC5.38□□□□□ -1.55
USHBP1Q8N6Y0 SNORA20.2-201ENST00000383922 131 ntBASIC5.38□□□□□ -1.55
USHBP1Q8N6Y0 Y_RNA.394-201ENST00000383942 103 ntBASIC5.38□□□□□ -1.55
USHBP1Q8N6Y0 U8.11-201ENST00000384699 133 ntBASIC5.38□□□□□ -1.55
USHBP1Q8N6Y0 U8.12-201ENST00000384701 133 ntBASIC5.38□□□□□ -1.55
USHBP1Q8N6Y0 TRAV9-2-201ENST00000390441 394 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
USHBP1Q8N6Y0 AC068050.1-201ENST00000394891 380 ntBASIC5.38□□□□□ -1.55
USHBP1Q8N6Y0 LIPN-201ENST00000404459 1197 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
USHBP1Q8N6Y0 RNU6-1068P-201ENST00000410958 103 ntBASIC5.38□□□□□ -1.55
USHBP1Q8N6Y0 AC005162.2-201ENST00000411479 578 ntTSL 4 BASIC5.38□□□□□ -1.55
USHBP1Q8N6Y0 AC093865.1-201ENST00000415387 433 ntTSL 3 BASIC5.38□□□□□ -1.55
USHBP1Q8N6Y0 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC5.38□□□□□ -1.55
USHBP1Q8N6Y0 BNIP3P2-201ENST00000441221 577 ntBASIC5.38□□□□□ -1.55
USHBP1Q8N6Y0 AC016691.1-201ENST00000441321 413 ntBASIC5.38□□□□□ -1.55
USHBP1Q8N6Y0 LINC01758-201ENST00000448001 458 ntTSL 3 BASIC5.38□□□□□ -1.55
USHBP1Q8N6Y0 AP001439.1-201ENST00000455275 392 ntTSL 2 BASIC5.38□□□□□ -1.55
USHBP1Q8N6Y0 AC233279.1-201ENST00000455300 423 ntBASIC5.38□□□□□ -1.55
USHBP1Q8N6Y0 U8.18-201ENST00000459285 133 ntBASIC5.38□□□□□ -1.55
USHBP1Q8N6Y0 RPL21P6-201ENST00000479171 504 ntBASIC5.38□□□□□ -1.55
USHBP1Q8N6Y0 AC108022.1-201ENST00000493466 478 ntBASIC5.38□□□□□ -1.55
USHBP1Q8N6Y0 AC010587.1-201ENST00000505809 469 ntBASIC5.38□□□□□ -1.55
USHBP1Q8N6Y0 AC026427.2-201ENST00000506228 536 ntBASIC5.38□□□□□ -1.55
USHBP1Q8N6Y0 IGKV1OR2-1-201ENST00000514060 354 ntBASIC5.38□□□□□ -1.55
USHBP1Q8N6Y0 AC093853.1-201ENST00000515689 483 ntBASIC5.38□□□□□ -1.55
USHBP1Q8N6Y0 RNU6-327P-201ENST00000516270 127 ntBASIC5.38□□□□□ -1.55
USHBP1Q8N6Y0 SNORA40.12-201ENST00000516329 111 ntBASIC5.38□□□□□ -1.55
USHBP1Q8N6Y0 RNU7-30P-201ENST00000516835 62 ntBASIC5.38□□□□□ -1.55
USHBP1Q8N6Y0 AC055720.2-201ENST00000537724 172 ntTSL 3 BASIC5.38□□□□□ -1.55
USHBP1Q8N6Y0 AC123904.2-201ENST00000548059 300 ntBASIC5.38□□□□□ -1.55
USHBP1Q8N6Y0 MIR3118-1-201ENST00000581787 76 ntBASIC5.38□□□□□ -1.55
USHBP1Q8N6Y0 AC115621.1-201ENST00000604653 858 ntBASIC5.38□□□□□ -1.55
USHBP1Q8N6Y0 DLC1-209ENST00000511869 2451 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
USHBP1Q8N6Y0 SRRM1-203ENST00000447431 3691 ntAPPRIS ALT2 TSL 5 BASIC5.38□□□□□ -1.55
USHBP1Q8N6Y0 KLRA1P-202ENST00000510134 1410 ntTSL 5 BASIC5.38□□□□□ -1.55
USHBP1Q8N6Y0 ZNF616-201ENST00000330123 2563 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 89.5 ms