Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 AL133388.1-201ENST00000404509 287 ntBASIC6.2□□□□□ -1.42
COL9A1P20849 AL157709.1-201ENST00000412695 424 ntTSL 3 BASIC6.2□□□□□ -1.42
COL9A1P20849 AC104462.2-201ENST00000418402 271 ntTSL 3 BASIC6.2□□□□□ -1.42
COL9A1P20849 AC099677.3-201ENST00000427081 395 ntBASIC6.2□□□□□ -1.42
COL9A1P20849 ARHGEF7-AS1-201ENST00000435037 321 ntTSL 3 BASIC6.2□□□□□ -1.42
COL9A1P20849 AC016700.2-201ENST00000446011 156 ntBASIC6.2□□□□□ -1.42
COL9A1P20849 AC079168.2-201ENST00000453977 416 ntBASIC6.2□□□□□ -1.42
COL9A1P20849 RNU6-840P-201ENST00000517275 65 ntBASIC6.2□□□□□ -1.42
COL9A1P20849 PWRN4-201ENST00000563016 420 ntTSL 5 BASIC6.2□□□□□ -1.42
COL9A1P20849 AC118757.1-201ENST00000586982 453 ntTSL 2 BASIC6.2□□□□□ -1.42
COL9A1P20849 AP001120.2-201ENST00000589395 296 ntTSL 3 BASIC6.2□□□□□ -1.42
COL9A1P20849 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC6.2□□□□□ -1.42
COL9A1P20849 SRGNP1-201ENST00000603392 451 ntBASIC6.2□□□□□ -1.42
COL9A1P20849 AC008814.1-201ENST00000603797 406 ntBASIC6.2□□□□□ -1.42
COL9A1P20849 AC024255.1-201ENST00000614376 102 ntBASIC6.2□□□□□ -1.42
COL9A1P20849 IGHVIII-44-202ENST00000636235 289 ntBASIC6.2□□□□□ -1.42
COL9A1P20849 MIR4679-1-201ENST00000637619 75 ntBASIC6.2□□□□□ -1.42
COL9A1P20849 WDPCP-202ENST00000398544 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC6.2□□□□□ -1.42
COL9A1P20849 TRRAP-201ENST00000355540 12590 ntAPPRIS P3 TSL 1 (best) BASIC6.2□□□□□ -1.42
COL9A1P20849 ANKFN1-201ENST00000318698 2426 ntAPPRIS P2 TSL 2 BASIC6.2□□□□□ -1.42
COL9A1P20849 PATL1-201ENST00000300146 4072 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
COL9A1P20849 SEPT7-203ENST00000399035 4066 ntAPPRIS ALT1 TSL 5 BASIC6.2□□□□□ -1.42
COL9A1P20849 ADAM5-208ENST00000505455 1998 ntTSL 1 (best) BASIC6.2□□□□□ -1.42
COL9A1P20849 IFIT1-202ENST00000546318 4613 ntTSL 3 BASIC6.2□□□□□ -1.42
COL9A1P20849 AC105235.1-201ENST00000623208 1816 ntBASIC6.2□□□□□ -1.42
COL9A1P20849 RMST-210ENST00000640149 2844 ntTSL 5 BASIC6.2□□□□□ -1.42
COL9A1P20849 SEL1L3-203ENST00000502949 3500 ntTSL 2 BASIC6.2□□□□□ -1.42
COL9A1P20849 RABL3-201ENST00000273375 3883 ntAPPRIS P1 TSL 1 (best) BASIC6.2□□□□□ -1.42
COL9A1P20849 ZNF320-205ENST00000595635 6448 ntAPPRIS P1 TSL 2 BASIC6.2□□□□□ -1.42
COL9A1P20849 RAP1GDS1-202ENST00000339360 2092 ntAPPRIS ALT1 TSL 1 (best) BASIC6.19□□□□□ -1.42
COL9A1P20849 PTBP3-202ENST00000334318 7990 ntAPPRIS ALT1 TSL 1 (best) BASIC6.19□□□□□ -1.42
COL9A1P20849 NCOA7-201ENST00000229634 2998 ntAPPRIS ALT2 TSL 2 BASIC6.19□□□□□ -1.42
COL9A1P20849 GLRA2-204ENST00000443437 3182 ntTSL 2 BASIC6.19□□□□□ -1.42
COL9A1P20849 NBPF12-205ENST00000617614 4630 ntTSL 5 BASIC6.19□□□□□ -1.42
COL9A1P20849 CHD2-215ENST00000628375 3202 ntTSL 5 BASIC6.19□□□□□ -1.42
COL9A1P20849 GOLGB1-201ENST00000340645 11187 ntAPPRIS P3 TSL 1 (best) BASIC6.19□□□□□ -1.42
COL9A1P20849 C5orf34-201ENST00000306862 2507 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
COL9A1P20849 ZNF507-203ENST00000544431 5764 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
COL9A1P20849 NCKAP5-203ENST00000405974 3636 ntAPPRIS ALT2 TSL 5 BASIC6.19□□□□□ -1.42
COL9A1P20849 ZNF480-202ENST00000335090 2722 ntTSL 3 BASIC6.19□□□□□ -1.42
COL9A1P20849 RNU6-151P-201ENST00000364158 107 ntBASIC6.19□□□□□ -1.42
COL9A1P20849 Y_RNA.218-201ENST00000364218 104 ntBASIC6.19□□□□□ -1.42
COL9A1P20849 RNA5SP478-201ENST00000364657 115 ntBASIC6.19□□□□□ -1.42
COL9A1P20849 RNU4-9P-201ENST00000364951 139 ntBASIC6.19□□□□□ -1.42
COL9A1P20849 RNU6-395P-201ENST00000365662 106 ntBASIC6.19□□□□□ -1.42
COL9A1P20849 AC019155.1-201ENST00000382242 574 ntBASIC6.19□□□□□ -1.42
COL9A1P20849 MIR135A2-201ENST00000384854 100 ntBASIC6.19□□□□□ -1.42
COL9A1P20849 AL022329.1-203ENST00000453811 451 ntTSL 3 BASIC6.19□□□□□ -1.42
COL9A1P20849 snoU13.30-201ENST00000458951 104 ntBASIC6.19□□□□□ -1.42
COL9A1P20849 RPS29P27-201ENST00000463711 170 ntBASIC6.19□□□□□ -1.42
COL9A1P20849 LINC01206-205ENST00000490001 949 ntTSL 5 BASIC6.19□□□□□ -1.42
COL9A1P20849 RPL21P129-201ENST00000491732 478 ntBASIC6.19□□□□□ -1.42
COL9A1P20849 PDCD5P2-201ENST00000507570 312 ntBASIC6.19□□□□□ -1.42
COL9A1P20849 RNU6-1315P-201ENST00000517187 99 ntBASIC6.19□□□□□ -1.42
COL9A1P20849 AP000859.1-201ENST00000525536 307 ntBASIC6.19□□□□□ -1.42
COL9A1P20849 AC011603.3-201ENST00000549516 279 ntTSL 3 BASIC6.19□□□□□ -1.42
COL9A1P20849 TMEM159-205ENST00000572599 713 ntAPPRIS P1 TSL 5 BASIC6.19□□□□□ -1.42
COL9A1P20849 AC136624.4-201ENST00000573044 370 ntBASIC6.19□□□□□ -1.42
COL9A1P20849 MIR4675-201ENST00000577898 77 ntBASIC6.19□□□□□ -1.42
COL9A1P20849 AC007557.3-201ENST00000418591 3135 ntTSL 2 BASIC6.19□□□□□ -1.42
COL9A1P20849 NUMB-201ENST00000355058 3342 ntAPPRIS ALT1 TSL 5 BASIC6.19□□□□□ -1.42
COL9A1P20849 MEPE-209ENST00000560249 2206 ntAPPRIS ALT2 TSL 1 (best) BASIC6.19□□□□□ -1.42
COL9A1P20849 EPS8-213ENST00000543612 2965 ntAPPRIS P1 TSL 2 BASIC6.19□□□□□ -1.42
COL9A1P20849 ESRRG-203ENST00000361395 5216 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
COL9A1P20849 ESRRG-209ENST00000408911 5216 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
COL9A1P20849 PMFBP1-207ENST00000537465 3935 ntAPPRIS ALT2 TSL 2 BASIC6.19□□□□□ -1.42
COL9A1P20849 PHYHIPL-201ENST00000373878 3569 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
COL9A1P20849 OR7D2-201ENST00000344248 3224 ntAPPRIS P1 BASIC6.19□□□□□ -1.42
COL9A1P20849 AL136537.2-201ENST00000562049 2471 ntTSL 1 (best) BASIC6.19□□□□□ -1.42
COL9A1P20849 AC139769.1-204ENST00000472297 1931 ntBASIC6.19□□□□□ -1.42
COL9A1P20849 ARHGAP32-201ENST00000310343 10111 ntAPPRIS P1 TSL 1 (best) BASIC6.19□□□□□ -1.42
COL9A1P20849 FRMD5-211ENST00000618556 5059 ntTSL 5 BASIC6.19□□□□□ -1.42
COL9A1P20849 AC092828.1-201ENST00000501211 5391 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
COL9A1P20849 PLEKHH2-201ENST00000282406 6981 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
COL9A1P20849 ZBTB25-204ENST00000608382 10372 ntAPPRIS P1 TSL 1 (best) BASIC6.18□□□□□ -1.42
COL9A1P20849 AL359195.2-201ENST00000623657 4412 ntBASIC6.18□□□□□ -1.42
COL9A1P20849 HBS1L-212ENST00000527578 2618 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
COL9A1P20849 NCOR1-204ENST00000395851 7950 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
COL9A1P20849 NBPF8-201ENST00000583271 5330 ntBASIC6.18□□□□□ -1.42
COL9A1P20849 MRE11-204ENST00000407439 2684 ntTSL 2 BASIC6.18□□□□□ -1.42
COL9A1P20849 CTNND1-236ENST00000533667 4990 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
COL9A1P20849 LINC01478-201ENST00000587877 2068 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
COL9A1P20849 AIG1-208ENST00000494282 3393 ntTSL 1 (best) BASIC6.18□□□□□ -1.42
COL9A1P20849 NKRF-204ENST00000542113 3351 ntTSL 3 BASIC6.18□□□□□ -1.42
COL9A1P20849 RNA5SP388-201ENST00000362584 119 ntBASIC6.18□□□□□ -1.42
COL9A1P20849 RNU6-80P-201ENST00000384195 107 ntBASIC6.18□□□□□ -1.42
COL9A1P20849 MT-TC-201ENST00000387405 66 ntBASIC6.18□□□□□ -1.42
COL9A1P20849 LAP3P1-201ENST00000403648 294 ntBASIC6.18□□□□□ -1.42
COL9A1P20849 AL096829.1-201ENST00000413677 457 ntBASIC6.18□□□□□ -1.42
COL9A1P20849 AC092447.6-201ENST00000414578 210 ntBASIC6.18□□□□□ -1.42
COL9A1P20849 AL391807.1-202ENST00000419979 534 ntTSL 2 BASIC6.18□□□□□ -1.42
COL9A1P20849 AL391219.1-201ENST00000422570 483 ntBASIC6.18□□□□□ -1.42
COL9A1P20849 AC024067.1-201ENST00000426199 223 ntBASIC6.18□□□□□ -1.42
COL9A1P20849 AC126120.1-201ENST00000431082 470 ntBASIC6.18□□□□□ -1.42
COL9A1P20849 AL358472.1-201ENST00000431295 329 ntBASIC6.18□□□□□ -1.42
COL9A1P20849 TOMM22P6-201ENST00000465035 409 ntBASIC6.18□□□□□ -1.42
COL9A1P20849 SUMO2P6-201ENST00000505273 288 ntBASIC6.18□□□□□ -1.42
COL9A1P20849 AK3P2-201ENST00000507976 429 ntBASIC6.18□□□□□ -1.42
COL9A1P20849 AC110767.1-201ENST00000508374 239 ntTSL 3 BASIC6.18□□□□□ -1.42
COL9A1P20849 AC074255.1-201ENST00000511259 501 ntBASIC6.18□□□□□ -1.42
Retrieved 100 of 98,524 protein–RNA pairs in 100.2 ms