Protein–RNA interactions for Protein: O43365

HOXA3, Homeobox protein Hox-A3, humanhuman

Predicted RBP Predictions only

Length 443 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA3O43365 PCDH11X-205ENST00000373094 9179 ntAPPRIS P4 TSL 1 (best) BASIC4.08□□□□□ -1.76
HOXA3O43365 CARD16-202ENST00000375706 686 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
HOXA3O43365 GPR34-201ENST00000378138 1815 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
HOXA3O43365 RNU6-701P-201ENST00000384059 107 ntBASIC4.08□□□□□ -1.76
HOXA3O43365 RNA5SP87-201ENST00000384155 118 ntBASIC4.08□□□□□ -1.76
HOXA3O43365 MIR606-201ENST00000384851 96 ntBASIC4.08□□□□□ -1.76
HOXA3O43365 TRAV24-201ENST00000390453 343 ntAPPRIS P1 BASIC4.08□□□□□ -1.76
HOXA3O43365 SNORA68.2-201ENST00000391263 128 ntBASIC4.08□□□□□ -1.76
HOXA3O43365 RPL21P67-201ENST00000402896 478 ntBASIC4.08□□□□□ -1.76
HOXA3O43365 IPO11-203ENST00000409534 1725 ntTSL 2 BASIC4.08□□□□□ -1.76
HOXA3O43365 LIMS1-AS1-201ENST00000411710 477 ntTSL 3 BASIC4.08□□□□□ -1.76
HOXA3O43365 RPS23P10-201ENST00000416185 486 ntBASIC4.08□□□□□ -1.76
HOXA3O43365 CTXN2-201ENST00000417307 2828 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
HOXA3O43365 AL137014.1-201ENST00000420490 1226 ntBASIC4.08□□□□□ -1.76
HOXA3O43365 AC099677.1-201ENST00000420575 175 ntBASIC4.08□□□□□ -1.76
HOXA3O43365 AL022396.1-201ENST00000427011 386 ntTSL 3 BASIC4.08□□□□□ -1.76
HOXA3O43365 CALM2P2-201ENST00000428512 440 ntBASIC4.08□□□□□ -1.76
HOXA3O43365 LINC01817-201ENST00000429317 564 ntTSL 4 BASIC4.08□□□□□ -1.76
HOXA3O43365 LINC02095-201ENST00000430908 346 ntTSL 2 BASIC4.08□□□□□ -1.76
HOXA3O43365 LINC00894-203ENST00000432696 298 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
HOXA3O43365 AL451139.1-201ENST00000434718 346 ntBASIC4.08□□□□□ -1.76
HOXA3O43365 PSMA4-201ENST00000044462 4411 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
HOXA3O43365 AC107399.1-201ENST00000451226 265 ntBASIC4.08□□□□□ -1.76
HOXA3O43365 Y_RNA.639-201ENST00000458981 102 ntBASIC4.08□□□□□ -1.76
HOXA3O43365 RN7SL443P-201ENST00000464331 290 ntBASIC4.08□□□□□ -1.76
HOXA3O43365 RN7SL860P-201ENST00000473738 223 ntBASIC4.08□□□□□ -1.76
HOXA3O43365 RPL21P93-201ENST00000480465 489 ntBASIC4.08□□□□□ -1.76
HOXA3O43365 MME-AS1-201ENST00000484721 828 ntTSL 2 BASIC4.08□□□□□ -1.76
HOXA3O43365 CREM-238ENST00000488741 651 ntTSL 2 BASIC4.08□□□□□ -1.76
HOXA3O43365 RPS24P16-201ENST00000497294 392 ntBASIC4.08□□□□□ -1.76
HOXA3O43365 AC139718.1-201ENST00000508010 300 ntTSL 5 BASIC4.08□□□□□ -1.76
HOXA3O43365 AC107396.1-201ENST00000509641 735 ntTSL 5 BASIC4.08□□□□□ -1.76
HOXA3O43365 AC016556.1-201ENST00000510004 935 ntTSL 2 BASIC4.08□□□□□ -1.76
HOXA3O43365 AC131956.2-201ENST00000510922 512 ntTSL 3 BASIC4.08□□□□□ -1.76
HOXA3O43365 AC005741.1-201ENST00000511094 432 ntBASIC4.08□□□□□ -1.76
HOXA3O43365 RNA5SP43-201ENST00000516559 110 ntBASIC4.08□□□□□ -1.76
HOXA3O43365 RNU6-566P-201ENST00000516790 107 ntBASIC4.08□□□□□ -1.76
HOXA3O43365 RNU6-685P-201ENST00000517088 95 ntBASIC4.08□□□□□ -1.76
HOXA3O43365 AC008694.2-201ENST00000517591 306 ntBASIC4.08□□□□□ -1.76
HOXA3O43365 CLVS1-205ENST00000519846 3622 ntAPPRIS P1 TSL 5 BASIC4.08□□□□□ -1.76
HOXA3O43365 RANP3-201ENST00000530970 276 ntBASIC4.08□□□□□ -1.76
HOXA3O43365 AC140847.1-201ENST00000538025 534 ntTSL 4 BASIC4.08□□□□□ -1.76
HOXA3O43365 BNIP3P1-201ENST00000547295 580 ntBASIC4.08□□□□□ -1.76
HOXA3O43365 APAF1-208ENST00000549007 3492 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
HOXA3O43365 AC138360.1-201ENST00000552332 386 ntTSL 3 BASIC4.08□□□□□ -1.76
HOXA3O43365 LINC01269-201ENST00000553682 602 ntTSL 4 BASIC4.08□□□□□ -1.76
HOXA3O43365 AC023824.4-201ENST00000562572 476 ntTSL 3 BASIC4.08□□□□□ -1.76
HOXA3O43365 MIR4270-201ENST00000581799 70 ntBASIC4.08□□□□□ -1.76
HOXA3O43365 MIR3672-201ENST00000584290 82 ntBASIC4.08□□□□□ -1.76
HOXA3O43365 AC104662.1-201ENST00000604448 511 ntBASIC4.08□□□□□ -1.76
HOXA3O43365 AL670379.4-201ENST00000605279 254 ntBASIC4.08□□□□□ -1.76
HOXA3O43365 AL627309.6-201ENST00000606857 840 ntBASIC4.08□□□□□ -1.76
HOXA3O43365 DUSP12P1-201ENST00000612874 516 ntBASIC4.08□□□□□ -1.76
HOXA3O43365 AC004696.1-201ENST00000614345 607 ntBASIC4.08□□□□□ -1.76
HOXA3O43365 WFDC11-203ENST00000618797 561 ntAPPRIS P1 TSL 5 BASIC4.08□□□□□ -1.76
HOXA3O43365 CD84-206ENST00000368054 8181 ntAPPRIS P3 TSL 1 (best) BASIC4.08□□□□□ -1.76
HOXA3O43365 IREB2-201ENST00000258886 6354 ntAPPRIS P1 TSL 1 (best) BASIC4.08□□□□□ -1.76
HOXA3O43365 LANCL1-204ENST00000441020 4503 ntAPPRIS P1 TSL 5 BASIC4.08□□□□□ -1.76
HOXA3O43365 LINC02431-201ENST00000503929 3601 ntTSL 1 (best) BASIC4.08□□□□□ -1.76
HOXA3O43365 AL034549.2-201ENST00000618285 3373 ntBASIC4.08□□□□□ -1.76
HOXA3O43365 MROH9-202ENST00000367759 3165 ntAPPRIS ALT2 TSL 5 BASIC4.08□□□□□ -1.76
HOXA3O43365 AC073136.1-201ENST00000449426 2884 ntBASIC4.08□□□□□ -1.76
HOXA3O43365 AHNAK-202ENST00000378024 18787 ntAPPRIS P3 TSL 2 BASIC4.07□□□□□ -1.76
HOXA3O43365 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC4.07□□□□□ -1.76
HOXA3O43365 TCP11X1-203ENST00000623912 1715 ntTSL 5 BASIC4.07□□□□□ -1.76
HOXA3O43365 AC008691.1-207ENST00000636819 4154 ntTSL 5 BASIC4.07□□□□□ -1.76
HOXA3O43365 PROM1-220ENST00000540805 3908 ntAPPRIS ALT2 TSL 5 BASIC4.07□□□□□ -1.76
HOXA3O43365 LRRC53-201ENST00000294635 3859 ntAPPRIS P1 TSL 5 BASIC4.07□□□□□ -1.76
HOXA3O43365 RNU6-1249P-201ENST00000363237 111 ntBASIC4.07□□□□□ -1.76
HOXA3O43365 SNORA4.3-201ENST00000365564 137 ntBASIC4.07□□□□□ -1.76
HOXA3O43365 MIR153-1-201ENST00000384914 90 ntBASIC4.07□□□□□ -1.76
HOXA3O43365 EIF4E2P1-201ENST00000393781 255 ntBASIC4.07□□□□□ -1.76
HOXA3O43365 RPL5P18-201ENST00000406671 891 ntBASIC4.07□□□□□ -1.76
HOXA3O43365 AC016397.1-201ENST00000412463 242 ntBASIC4.07□□□□□ -1.76
HOXA3O43365 LINC02542-201ENST00000418567 822 ntTSL 5 BASIC4.07□□□□□ -1.76
HOXA3O43365 AC064875.1-202ENST00000421112 561 ntTSL 4 BASIC4.07□□□□□ -1.76
HOXA3O43365 TRAPPC2P9-201ENST00000434556 343 ntBASIC4.07□□□□□ -1.76
HOXA3O43365 AL354714.3-201ENST00000447284 493 ntBASIC4.07□□□□□ -1.76
HOXA3O43365 CEACAMP6-201ENST00000452007 574 ntBASIC4.07□□□□□ -1.76
HOXA3O43365 AL109763.1-201ENST00000455391 461 ntTSL 2 BASIC4.07□□□□□ -1.76
HOXA3O43365 AC123023.1-201ENST00000455974 555 ntTSL 4 BASIC4.07□□□□□ -1.76
HOXA3O43365 RPS29P33-201ENST00000456717 146 ntBASIC4.07□□□□□ -1.76
HOXA3O43365 ANKRD7-204ENST00000477532 744 ntTSL 5 BASIC4.07□□□□□ -1.76
HOXA3O43365 RPL7P43-201ENST00000478876 753 ntBASIC4.07□□□□□ -1.76
HOXA3O43365 AC106872.2-201ENST00000494303 480 ntBASIC4.07□□□□□ -1.76
HOXA3O43365 OR7H2P-201ENST00000513483 306 ntBASIC4.07□□□□□ -1.76
HOXA3O43365 LIAS-206ENST00000513731 826 ntTSL 5 BASIC4.07□□□□□ -1.76
HOXA3O43365 AC026801.2-201ENST00000515352 425 ntBASIC4.07□□□□□ -1.76
HOXA3O43365 AP002444.1-201ENST00000534252 620 ntTSL 3 BASIC4.07□□□□□ -1.76
HOXA3O43365 ELOCP31-201ENST00000540463 467 ntBASIC4.07□□□□□ -1.76
HOXA3O43365 AC128707.1-201ENST00000552230 494 ntTSL 3 BASIC4.07□□□□□ -1.76
HOXA3O43365 AC073878.2-201ENST00000565449 385 ntTSL 3 BASIC4.07□□□□□ -1.76
HOXA3O43365 MTCYBP13-201ENST00000578634 1093 ntBASIC4.07□□□□□ -1.76
HOXA3O43365 AC080078.3-201ENST00000605407 463 ntBASIC4.07□□□□□ -1.76
HOXA3O43365 AL161616.1-201ENST00000611867 286 ntBASIC4.07□□□□□ -1.76
HOXA3O43365 uc_338.18-201ENST00000615451 175 ntBASIC4.07□□□□□ -1.76
HOXA3O43365 AL450472.3-201ENST00000615578 367 ntBASIC4.07□□□□□ -1.76
HOXA3O43365 DLX6-AS1_1.1-201ENST00000621599 180 ntBASIC4.07□□□□□ -1.76
HOXA3O43365 SPAM1-202ENST00000340011 2349 ntAPPRIS P4 TSL 1 (best) BASIC4.07□□□□□ -1.76
HOXA3O43365 ATXN3L-201ENST00000380622 2164 ntAPPRIS P1 BASIC4.07□□□□□ -1.76
Retrieved 100 of 98,524 protein–RNA pairs in 98.2 ms