Protein–RNA interactions for Protein: A0A087X0R7

SENP3-EIF4A1, SENP3-EIF4A1 readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SENP3-EIF4A1A0A087X0R7 RPL9P9-201ENST00000418824 636 ntTSL 2 BASIC6.43□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 ARL5AP4-201ENST00000430731 512 ntBASIC6.43□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 RPL21P23-201ENST00000446654 460 ntBASIC6.43□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 PCNPP5-201ENST00000452246 481 ntBASIC6.43□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC6.43□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AL035409.1-201ENST00000454305 497 ntTSL 2 BASIC6.43□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 RNU7-66P-201ENST00000459469 62 ntBASIC6.43□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 RPL23AP11-201ENST00000475260 469 ntBASIC6.43□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AC092666.1-202ENST00000493400 442 ntTSL 2 BASIC6.43□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 ARHGEF3-AS1-202ENST00000495939 336 ntTSL 3 BASIC6.43□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AC004062.1-201ENST00000509926 645 ntBASIC6.43□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AC073429.1-201ENST00000511749 503 ntTSL 3 BASIC6.43□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 SNORA74D-201ENST00000516404 141 ntBASIC6.43□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 RNU1-45P-201ENST00000517191 141 ntBASIC6.43□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AC104316.1-201ENST00000521258 625 ntTSL 3 BASIC6.43□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 OR5M1-201ENST00000526538 948 ntAPPRIS P1 BASIC6.43□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AC008126.1-201ENST00000549019 480 ntBASIC6.43□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AC026771.1-201ENST00000564672 415 ntTSL 2 BASIC6.43□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 ATP1B3P1-201ENST00000605365 821 ntBASIC6.43□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AC006157.1-201ENST00000611750 366 ntBASIC6.43□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AC245452.5-201ENST00000620649 780 ntTSL 3 BASIC6.43□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AC244472.1-201ENST00000620773 347 ntAPPRIS P1 BASIC6.43□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AL031656.1-202ENST00000457704 1995 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 GPR85-201ENST00000297146 5079 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 DNAJB4-201ENST00000370763 2988 ntAPPRIS P1 TSL 1 (best) BASIC6.43□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 STEAP2-205ENST00000394629 2261 ntTSL 1 (best) BASIC6.43□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 MBNL3-201ENST00000370839 1575 ntAPPRIS ALT1 TSL 1 (best) BASIC6.43□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AC083843.2-201ENST00000568248 6253 ntBASIC6.43□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 WDR72-202ENST00000396328 7507 ntAPPRIS P2 TSL 1 (best) BASIC6.43□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 ZBTB44-210ENST00000530205 2179 ntTSL 1 (best) BASIC6.42□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 ZNF486-201ENST00000335117 3837 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 MTND5P30-201ENST00000452896 1731 ntBASIC6.42□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 DNAH14-208ENST00000430092 13763 ntAPPRIS P1 TSL 5 BASIC6.42□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 ZNF28-204ENST00000457749 4556 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 TRBV21OR9-2-201ENST00000331828 367 ntAPPRIS P1 BASIC6.42□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 RN7SKP280-201ENST00000364196 304 ntBASIC6.42□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 S100A9-201ENST00000368738 577 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 RNU6-1109P-201ENST00000391187 107 ntBASIC6.42□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 SSXP10-201ENST00000402595 565 ntBASIC6.42□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 RN7SKP100-201ENST00000411258 284 ntBASIC6.42□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 RPL12P34-201ENST00000424532 479 ntBASIC6.42□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AC137499.1-201ENST00000427602 88 ntBASIC6.42□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 CYCSP24-201ENST00000445119 316 ntBASIC6.42□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC6.42□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 NRG3-AS1-201ENST00000448936 555 ntTSL 2 BASIC6.42□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 RPS20P32-201ENST00000456044 356 ntBASIC6.42□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AC010326.1-201ENST00000462726 602 ntBASIC6.42□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AC008571.1-201ENST00000467232 300 ntBASIC6.42□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 RNA5SP249-201ENST00000516127 99 ntBASIC6.42□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 SCARNA24.1-201ENST00000516465 137 ntBASIC6.42□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AC087854.1-201ENST00000519706 414 ntBASIC6.42□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AC021242.2-203ENST00000521842 687 ntTSL 3 BASIC6.42□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AC096558.2-201ENST00000546678 506 ntTSL 3 BASIC6.42□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 FKBP1BP1-201ENST00000553366 325 ntBASIC6.42□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AP001029.3-201ENST00000588063 596 ntBASIC6.42□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 BNIP3P16-201ENST00000589779 534 ntBASIC6.42□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AC018889.1-201ENST00000605372 397 ntBASIC6.42□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AC004805.2-201ENST00000605382 482 ntBASIC6.42□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AC012409.4-201ENST00000612923 249 ntBASIC6.42□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AL445567.2-201ENST00000618935 498 ntBASIC6.42□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 PLCE1P1-201ENST00000622094 305 ntBASIC6.42□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AC006355.2-201ENST00000629240 317 ntTSL 3 BASIC6.42□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 MTND5P28-201ENST00000438005 1594 ntBASIC6.42□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 MCF2L2-202ENST00000414362 3031 ntTSL 2 BASIC6.42□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 TLR8-201ENST00000218032 4216 ntAPPRIS ALT2 TSL 1 (best) BASIC6.42□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 UBR5-204ENST00000518205 1931 ntTSL 5 BASIC6.42□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AC004972.1-201ENST00000623934 2209 ntBASIC6.42□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 ALB-201ENST00000295897 2263 ntAPPRIS P1 TSL 1 (best) BASIC6.42□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 CACNB4-243ENST00000637217 8188 ntTSL 5 BASIC6.42□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 TAX1BP1-203ENST00000409980 2629 ntAPPRIS ALT2 TSL 5 BASIC6.42□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AC009951.1-201ENST00000623674 2614 ntBASIC6.42□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 LMOD2-202ENST00000458573 2346 ntAPPRIS P1 TSL 2 BASIC6.42□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AC000374.1-201ENST00000434698 1745 ntBASIC6.42□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 LINGO2-201ENST00000308675 3031 ntAPPRIS P1 TSL 5 BASIC6.42□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC6.42□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 CNGA1-209ENST00000544810 2722 ntAPPRIS ALT2 TSL 5 BASIC6.41□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 MEIOB-205ENST00000470044 1857 ntTSL 2 BASIC6.41□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC6.41□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 TLK1-212ENST00000521943 2605 ntTSL 2 BASIC6.41□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 XRCC4-205ENST00000511817 1636 ntAPPRIS P4 TSL 1 (best) BASIC6.41□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 RNU6-657P-201ENST00000383904 107 ntBASIC6.41□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AL606923.1-201ENST00000406616 190 ntBASIC6.41□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 RNU4-6P-201ENST00000410804 122 ntBASIC6.41□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 ELOCP19-201ENST00000411919 318 ntBASIC6.41□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 CTSL3P-202ENST00000412179 788 ntBASIC6.41□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 IQCA1-AS1-201ENST00000413353 489 ntTSL 3 BASIC6.41□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 LINC00368-201ENST00000422994 650 ntTSL 1 (best) BASIC6.41□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 RPS3AP12-201ENST00000443616 753 ntBASIC6.41□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 PRPS1P1-201ENST00000445305 876 ntBASIC6.41□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 GPC6-AS2-201ENST00000445540 587 ntTSL 5 BASIC6.41□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 IGKV1OR-3-201ENST00000446944 348 ntBASIC6.41□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 RPS20P21-201ENST00000466859 343 ntBASIC6.41□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AC108752.1-203ENST00000496674 339 ntTSL 5 BASIC6.41□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AC004069.1-201ENST00000504082 549 ntTSL 4 BASIC6.41□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 SUMO2P4-201ENST00000504193 276 ntBASIC6.41□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 HSPD1P15-201ENST00000505573 1122 ntBASIC6.41□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AC104304.1-201ENST00000505797 291 ntAPPRIS P1 TSL 3 BASIC6.41□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 AC091868.1-201ENST00000508746 304 ntBASIC6.41□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 Y_RNA.661-201ENST00000516003 99 ntBASIC6.41□□□□□ -1.38
SENP3-EIF4A1A0A087X0R7 RNU6-709P-201ENST00000517257 104 ntBASIC6.41□□□□□ -1.38
Retrieved 100 of 98,524 protein–RNA pairs in 113.5 ms