Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC19.32■□□□□ 0.68
LHX3Q9UBR4 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
LHX3Q9UBR4 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
LHX3Q9UBR4 TH-203ENST00000352909 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
LHX3Q9UBR4 TCP11-204ENST00000373979 1882 ntAPPRIS P3 TSL 5 BASIC19.32■□□□□ 0.68
LHX3Q9UBR4 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC19.32■□□□□ 0.68
LHX3Q9UBR4 ILF3-217ENST00000589998 2622 ntTSL 2 BASIC19.32■□□□□ 0.68
LHX3Q9UBR4 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
LHX3Q9UBR4 LAG3-201ENST00000203629 1974 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
LHX3Q9UBR4 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC19.32■□□□□ 0.68
LHX3Q9UBR4 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC19.32■□□□□ 0.68
LHX3Q9UBR4 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
LHX3Q9UBR4 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
LHX3Q9UBR4 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC19.31■□□□□ 0.68
LHX3Q9UBR4 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC19.31■□□□□ 0.68
LHX3Q9UBR4 CYP2F1-201ENST00000331105 1720 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
LHX3Q9UBR4 GCOM1-201ENST00000380568 1516 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
LHX3Q9UBR4 AC139491.1-201ENST00000512675 1516 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
LHX3Q9UBR4 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC19.31■□□□□ 0.68
LHX3Q9UBR4 IRX1P1-201ENST00000438849 1838 ntBASIC19.31■□□□□ 0.68
LHX3Q9UBR4 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
LHX3Q9UBR4 MUC1-211ENST00000438413 927 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
LHX3Q9UBR4 KCTD10-211ENST00000540411 866 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
LHX3Q9UBR4 C2orf69P3-201ENST00000565542 1120 ntBASIC19.31■□□□□ 0.68
LHX3Q9UBR4 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
LHX3Q9UBR4 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC19.31■□□□□ 0.68
LHX3Q9UBR4 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC19.31■□□□□ 0.68
LHX3Q9UBR4 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC19.31■□□□□ 0.68
LHX3Q9UBR4 FAM217A-208ENST00000639338 1929 ntTSL 5 BASIC19.31■□□□□ 0.68
LHX3Q9UBR4 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
LHX3Q9UBR4 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
LHX3Q9UBR4 UBL4A-202ENST00000369660 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LHX3Q9UBR4 PDZD7-201ENST00000370215 2032 ntTSL 2 BASIC19.3■□□□□ 0.68
LHX3Q9UBR4 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LHX3Q9UBR4 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LHX3Q9UBR4 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC19.3■□□□□ 0.68
LHX3Q9UBR4 CFAP100-203ENST00000505024 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
LHX3Q9UBR4 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC19.3■□□□□ 0.68
LHX3Q9UBR4 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
LHX3Q9UBR4 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC19.3■□□□□ 0.68
LHX3Q9UBR4 TSPY14P-201ENST00000303979 915 ntBASIC19.3■□□□□ 0.68
LHX3Q9UBR4 INGX-201ENST00000359239 846 ntBASIC19.3■□□□□ 0.68
LHX3Q9UBR4 HIST1H2APS4-201ENST00000362070 348 ntBASIC19.3■□□□□ 0.68
LHX3Q9UBR4 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LHX3Q9UBR4 HPF1-201ENST00000393381 1230 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LHX3Q9UBR4 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC19.3■□□□□ 0.68
LHX3Q9UBR4 IKBKB-210ENST00000518983 447 ntTSL 2 BASIC19.3■□□□□ 0.68
LHX3Q9UBR4 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC19.3■□□□□ 0.68
LHX3Q9UBR4 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LHX3Q9UBR4 AC097493.4-201ENST00000641197 219 ntBASIC19.3■□□□□ 0.68
LHX3Q9UBR4 UHRF1-203ENST00000615884 2651 ntAPPRIS P1 TSL 2 BASIC19.3■□□□□ 0.68
LHX3Q9UBR4 AP3S1-201ENST00000316788 1730 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LHX3Q9UBR4 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
LHX3Q9UBR4 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
LHX3Q9UBR4 NRXN2-205ENST00000409571 6381 ntAPPRIS ALT2 TSL 5 BASIC19.3■□□□□ 0.68
LHX3Q9UBR4 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC19.3■□□□□ 0.68
LHX3Q9UBR4 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
LHX3Q9UBR4 ACY1-201ENST00000404366 1473 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LHX3Q9UBR4 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
LHX3Q9UBR4 KLHL14-201ENST00000358095 1884 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
LHX3Q9UBR4 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC19.29■□□□□ 0.68
LHX3Q9UBR4 BTNL9-210ENST00000515271 1444 ntTSL 2 BASIC19.29■□□□□ 0.68
LHX3Q9UBR4 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
LHX3Q9UBR4 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC19.29■□□□□ 0.68
LHX3Q9UBR4 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC19.29■□□□□ 0.68
LHX3Q9UBR4 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC19.29■□□□□ 0.68
LHX3Q9UBR4 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC19.29■□□□□ 0.68
LHX3Q9UBR4 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
LHX3Q9UBR4 NR1H2-201ENST00000253727 1998 ntAPPRIS P2 TSL 1 (best) BASIC19.29■□□□□ 0.68
LHX3Q9UBR4 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC19.29■□□□□ 0.68
LHX3Q9UBR4 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
LHX3Q9UBR4 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC19.29■□□□□ 0.68
LHX3Q9UBR4 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LHX3Q9UBR4 LINC01568-207ENST00000641790 1380 ntBASIC19.29■□□□□ 0.68
LHX3Q9UBR4 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LHX3Q9UBR4 CYGB-201ENST00000293230 2158 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
LHX3Q9UBR4 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
LHX3Q9UBR4 HAUS4-217ENST00000555367 1454 ntTSL 5 BASIC19.28■□□□□ 0.68
LHX3Q9UBR4 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
LHX3Q9UBR4 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC19.28■□□□□ 0.68
LHX3Q9UBR4 UBQLN4P1-201ENST00000461599 1801 ntBASIC19.28■□□□□ 0.68
LHX3Q9UBR4 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC19.28■□□□□ 0.68
LHX3Q9UBR4 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LHX3Q9UBR4 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LHX3Q9UBR4 CRAT-202ENST00000393384 973 ntTSL 2 BASIC19.28■□□□□ 0.68
LHX3Q9UBR4 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC19.28■□□□□ 0.68
LHX3Q9UBR4 ECEL1P3-201ENST00000427961 737 ntBASIC19.28■□□□□ 0.68
LHX3Q9UBR4 CA15P1-201ENST00000481698 905 ntBASIC19.28■□□□□ 0.68
LHX3Q9UBR4 EGLN1P1-201ENST00000531623 762 ntBASIC19.28■□□□□ 0.68
LHX3Q9UBR4 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC19.28■□□□□ 0.68
LHX3Q9UBR4 EIF2AK4-209ENST00000560648 687 ntTSL 3 BASIC19.28■□□□□ 0.68
LHX3Q9UBR4 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC19.28■□□□□ 0.68
LHX3Q9UBR4 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC19.28■□□□□ 0.68
LHX3Q9UBR4 AC145285.6-201ENST00000604632 637 ntBASIC19.28■□□□□ 0.68
LHX3Q9UBR4 AL023803.3-201ENST00000615559 522 ntBASIC19.28■□□□□ 0.68
LHX3Q9UBR4 P2RX5-202ENST00000345901 2031 ntTSL 5 BASIC19.28■□□□□ 0.68
LHX3Q9UBR4 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.28■□□□□ 0.68
LHX3Q9UBR4 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC19.28■□□□□ 0.68
LHX3Q9UBR4 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC19.28■□□□□ 0.68
LHX3Q9UBR4 FEM1AP3-201ENST00000403722 1741 ntBASIC19.28■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 74.4 ms