Protein–RNA interactions for Protein: Q9UBP4

DKK3, Dickkopf-related protein 3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DKK3Q9UBP4 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
DKK3Q9UBP4 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC19.24■□□□□ 0.67
DKK3Q9UBP4 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC19.24■□□□□ 0.67
DKK3Q9UBP4 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC19.24■□□□□ 0.67
DKK3Q9UBP4 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC19.24■□□□□ 0.67
DKK3Q9UBP4 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC19.24■□□□□ 0.67
DKK3Q9UBP4 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC19.24■□□□□ 0.67
DKK3Q9UBP4 DBNL-217ENST00000468694 2068 ntAPPRIS ALT2 TSL 2 BASIC19.24■□□□□ 0.67
DKK3Q9UBP4 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC19.24■□□□□ 0.67
DKK3Q9UBP4 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
DKK3Q9UBP4 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
DKK3Q9UBP4 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
DKK3Q9UBP4 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC19.24■□□□□ 0.67
DKK3Q9UBP4 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
DKK3Q9UBP4 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC19.24■□□□□ 0.67
DKK3Q9UBP4 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.67
DKK3Q9UBP4 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC19.24■□□□□ 0.67
DKK3Q9UBP4 TSHZ3-201ENST00000240587 5176 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
DKK3Q9UBP4 BIRC2-206ENST00000530675 1927 ntTSL 2 BASIC19.23■□□□□ 0.67
DKK3Q9UBP4 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC19.23■□□□□ 0.67
DKK3Q9UBP4 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
DKK3Q9UBP4 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC19.23■□□□□ 0.67
DKK3Q9UBP4 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC19.23■□□□□ 0.67
DKK3Q9UBP4 HSCB-201ENST00000216027 1114 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
DKK3Q9UBP4 PTMS-201ENST00000309083 1139 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
DKK3Q9UBP4 TSPY23P-201ENST00000440136 739 ntBASIC19.23■□□□□ 0.67
DKK3Q9UBP4 AC128688.1-201ENST00000487626 519 ntBASIC19.23■□□□□ 0.67
DKK3Q9UBP4 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC19.23■□□□□ 0.67
DKK3Q9UBP4 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC19.23■□□□□ 0.67
DKK3Q9UBP4 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
DKK3Q9UBP4 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC19.23■□□□□ 0.67
DKK3Q9UBP4 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC19.23■□□□□ 0.67
DKK3Q9UBP4 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC19.23■□□□□ 0.67
DKK3Q9UBP4 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
DKK3Q9UBP4 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
DKK3Q9UBP4 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
DKK3Q9UBP4 ACD-214ENST00000620338 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
DKK3Q9UBP4 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
DKK3Q9UBP4 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC19.23■□□□□ 0.67
DKK3Q9UBP4 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
DKK3Q9UBP4 ZXDB-201ENST00000374888 5894 ntAPPRIS P1 BASIC19.23■□□□□ 0.67
DKK3Q9UBP4 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
DKK3Q9UBP4 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
DKK3Q9UBP4 DBX1-201ENST00000524983 1380 ntAPPRIS P1 TSL 5 BASIC19.22■□□□□ 0.67
DKK3Q9UBP4 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
DKK3Q9UBP4 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
DKK3Q9UBP4 AP001626.1-201ENST00000424890 2854 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
DKK3Q9UBP4 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
DKK3Q9UBP4 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC19.22■□□□□ 0.67
DKK3Q9UBP4 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC19.22■□□□□ 0.67
DKK3Q9UBP4 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
DKK3Q9UBP4 CCR12P-201ENST00000446203 998 ntBASIC19.22■□□□□ 0.67
DKK3Q9UBP4 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC19.22■□□□□ 0.67
DKK3Q9UBP4 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC19.22■□□□□ 0.67
DKK3Q9UBP4 RAB2A-211ENST00000531289 1058 ntTSL 2 BASIC19.22■□□□□ 0.67
DKK3Q9UBP4 AL023803.3-201ENST00000615559 522 ntBASIC19.22■□□□□ 0.67
DKK3Q9UBP4 AC116562.4-202ENST00000641738 218 ntBASIC19.22■□□□□ 0.67
DKK3Q9UBP4 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
DKK3Q9UBP4 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC19.22■□□□□ 0.67
DKK3Q9UBP4 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC19.22■□□□□ 0.67
DKK3Q9UBP4 TP73-202ENST00000354437 2140 ntTSL 5 BASIC19.22■□□□□ 0.67
DKK3Q9UBP4 AC093627.4-201ENST00000484550 5008 ntTSL 2 BASIC19.22■□□□□ 0.67
DKK3Q9UBP4 KTI12-201ENST00000371614 1714 ntAPPRIS P1 BASIC19.22■□□□□ 0.67
DKK3Q9UBP4 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC19.22■□□□□ 0.67
DKK3Q9UBP4 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
DKK3Q9UBP4 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC19.22■□□□□ 0.67
DKK3Q9UBP4 GAL3ST1-206ENST00000406955 1635 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
DKK3Q9UBP4 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
DKK3Q9UBP4 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC19.21■□□□□ 0.67
DKK3Q9UBP4 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
DKK3Q9UBP4 MELTF-202ENST00000296351 1650 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
DKK3Q9UBP4 KCNK4-202ENST00000422670 1697 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
DKK3Q9UBP4 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
DKK3Q9UBP4 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC19.21■□□□□ 0.67
DKK3Q9UBP4 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC19.21■□□□□ 0.67
DKK3Q9UBP4 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC19.21■□□□□ 0.67
DKK3Q9UBP4 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
DKK3Q9UBP4 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC19.21■□□□□ 0.67
DKK3Q9UBP4 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC19.21■□□□□ 0.67
DKK3Q9UBP4 HIST1H2APS4-201ENST00000362070 348 ntBASIC19.21■□□□□ 0.67
DKK3Q9UBP4 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
DKK3Q9UBP4 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC19.21■□□□□ 0.67
DKK3Q9UBP4 TMA16-209ENST00000513272 803 ntTSL 2 BASIC19.21■□□□□ 0.67
DKK3Q9UBP4 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC19.21■□□□□ 0.67
DKK3Q9UBP4 PPOX-219ENST00000544598 813 ntTSL 2 BASIC19.21■□□□□ 0.67
DKK3Q9UBP4 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
DKK3Q9UBP4 DUT-205ENST00000558813 769 ntTSL 2 BASIC19.21■□□□□ 0.67
DKK3Q9UBP4 AC005363.2-201ENST00000618631 242 ntBASIC19.21■□□□□ 0.67
DKK3Q9UBP4 CLN6-221ENST00000637494 765 ntTSL 5 BASIC19.21■□□□□ 0.67
DKK3Q9UBP4 TOM1L1-202ENST00000445275 2228 ntTSL 2 BASIC19.21■□□□□ 0.67
DKK3Q9UBP4 ETV2-203ENST00000402764 1487 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
DKK3Q9UBP4 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
DKK3Q9UBP4 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC19.2■□□□□ 0.66
DKK3Q9UBP4 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
DKK3Q9UBP4 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
DKK3Q9UBP4 POLI-202ENST00000406285 2030 ntTSL 2 BASIC19.2■□□□□ 0.66
DKK3Q9UBP4 GOSR2-210ENST00000576910 1891 ntAPPRIS ALT1 TSL 5 BASIC19.2■□□□□ 0.66
DKK3Q9UBP4 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
DKK3Q9UBP4 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
DKK3Q9UBP4 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms