Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 C17orf58-204ENST00000580729 2065 ntTSL 5 BASIC20.98■□□□□ 0.95
TRAIPQ9BWF2 EIF5A-204ENST00000416016 1336 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TRAIPQ9BWF2 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TRAIPQ9BWF2 LINC01465-201ENST00000408887 1940 ntBASIC20.98■□□□□ 0.95
TRAIPQ9BWF2 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TRAIPQ9BWF2 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
TRAIPQ9BWF2 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC20.97■□□□□ 0.95
TRAIPQ9BWF2 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC20.97■□□□□ 0.95
TRAIPQ9BWF2 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
TRAIPQ9BWF2 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC20.97■□□□□ 0.95
TRAIPQ9BWF2 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC20.97■□□□□ 0.95
TRAIPQ9BWF2 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
TRAIPQ9BWF2 HRAS-201ENST00000311189 894 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TRAIPQ9BWF2 ARMC10P1-201ENST00000313754 855 ntBASIC20.97■□□□□ 0.95
TRAIPQ9BWF2 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC20.97■□□□□ 0.95
TRAIPQ9BWF2 RTBDN-202ENST00000393233 1000 ntAPPRIS ALT2 TSL 3 BASIC20.97■□□□□ 0.95
TRAIPQ9BWF2 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC20.97■□□□□ 0.95
TRAIPQ9BWF2 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
TRAIPQ9BWF2 RMI2-205ENST00000576027 818 ntTSL 2 BASIC20.97■□□□□ 0.95
TRAIPQ9BWF2 GPX4-207ENST00000589115 812 ntTSL 2 BASIC20.97■□□□□ 0.95
TRAIPQ9BWF2 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
TRAIPQ9BWF2 SRMS-201ENST00000217188 1516 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TRAIPQ9BWF2 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TRAIPQ9BWF2 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
TRAIPQ9BWF2 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
TRAIPQ9BWF2 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC20.97■□□□□ 0.95
TRAIPQ9BWF2 MLF2-202ENST00000435120 1379 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.95
TRAIPQ9BWF2 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC20.97■□□□□ 0.95
TRAIPQ9BWF2 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRAIPQ9BWF2 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRAIPQ9BWF2 EFCAB11-202ENST00000538485 1870 ntTSL 2 BASIC20.96■□□□□ 0.95
TRAIPQ9BWF2 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRAIPQ9BWF2 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
TRAIPQ9BWF2 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRAIPQ9BWF2 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
TRAIPQ9BWF2 ISM2-207ENST00000493585 1739 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
TRAIPQ9BWF2 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
TRAIPQ9BWF2 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
TRAIPQ9BWF2 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
TRAIPQ9BWF2 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRAIPQ9BWF2 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC20.96■□□□□ 0.95
TRAIPQ9BWF2 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
TRAIPQ9BWF2 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC20.96■□□□□ 0.95
TRAIPQ9BWF2 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRAIPQ9BWF2 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC20.96■□□□□ 0.95
TRAIPQ9BWF2 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRAIPQ9BWF2 TEX13A-202ENST00000609007 1349 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRAIPQ9BWF2 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
TRAIPQ9BWF2 AC026362.1-201ENST00000540866 5618 ntTSL 2 BASIC20.96■□□□□ 0.95
TRAIPQ9BWF2 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRAIPQ9BWF2 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRAIPQ9BWF2 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
TRAIPQ9BWF2 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
TRAIPQ9BWF2 GMPPA-213ENST00000622191 1473 ntTSL 5 BASIC20.95■□□□□ 0.94
TRAIPQ9BWF2 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC20.95■□□□□ 0.94
TRAIPQ9BWF2 CYP46A1-202ENST00000380228 1597 ntTSL 2 BASIC20.95■□□□□ 0.94
TRAIPQ9BWF2 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
TRAIPQ9BWF2 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
TRAIPQ9BWF2 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TRAIPQ9BWF2 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TRAIPQ9BWF2 GXYLT1P6-201ENST00000456472 1187 ntBASIC20.95■□□□□ 0.94
TRAIPQ9BWF2 CDKN2AIPNL-202ENST00000458198 1223 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TRAIPQ9BWF2 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
TRAIPQ9BWF2 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC20.95■□□□□ 0.94
TRAIPQ9BWF2 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC20.95■□□□□ 0.94
TRAIPQ9BWF2 GEMIN7-203ENST00000591607 848 ntAPPRIS P1 TSL 3 BASIC20.95■□□□□ 0.94
TRAIPQ9BWF2 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC20.95■□□□□ 0.94
TRAIPQ9BWF2 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
TRAIPQ9BWF2 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TRAIPQ9BWF2 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TRAIPQ9BWF2 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
TRAIPQ9BWF2 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
TRAIPQ9BWF2 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC20.95■□□□□ 0.94
TRAIPQ9BWF2 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC20.95■□□□□ 0.94
TRAIPQ9BWF2 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC20.95■□□□□ 0.94
TRAIPQ9BWF2 MORF4L1-215ENST00000559345 1468 ntTSL 2 BASIC20.94■□□□□ 0.94
TRAIPQ9BWF2 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
TRAIPQ9BWF2 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TRAIPQ9BWF2 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TRAIPQ9BWF2 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
TRAIPQ9BWF2 ZNF346-209ENST00000512315 1575 ntTSL 2 BASIC20.94■□□□□ 0.94
TRAIPQ9BWF2 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC20.94■□□□□ 0.94
TRAIPQ9BWF2 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC20.94■□□□□ 0.94
TRAIPQ9BWF2 ROPN1L-202ENST00000503804 1291 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
TRAIPQ9BWF2 PRSS44-201ENST00000515154 1146 ntBASIC20.94■□□□□ 0.94
TRAIPQ9BWF2 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC20.94■□□□□ 0.94
TRAIPQ9BWF2 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
TRAIPQ9BWF2 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC20.94■□□□□ 0.94
TRAIPQ9BWF2 YPEL5-205ENST00000402708 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TRAIPQ9BWF2 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
TRAIPQ9BWF2 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TRAIPQ9BWF2 CYB561-213ENST00000581573 2344 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TRAIPQ9BWF2 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
TRAIPQ9BWF2 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
TRAIPQ9BWF2 SERGEF-201ENST00000265965 1566 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TRAIPQ9BWF2 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
TRAIPQ9BWF2 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
TRAIPQ9BWF2 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC20.93■□□□□ 0.94
TRAIPQ9BWF2 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC20.93■□□□□ 0.94
TRAIPQ9BWF2 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 23.6 ms