Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
CDX2Q99626 AC116407.3-201ENST00000623905 1129 ntBASIC20.06■□□□□ 0.8
CDX2Q99626 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC20.06■□□□□ 0.8
CDX2Q99626 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC20.06■□□□□ 0.8
CDX2Q99626 AC134684.3-201ENST00000641758 218 ntBASIC20.06■□□□□ 0.8
CDX2Q99626 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
CDX2Q99626 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CDX2Q99626 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC20.06■□□□□ 0.8
CDX2Q99626 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
CDX2Q99626 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
CDX2Q99626 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC20.06■□□□□ 0.8
CDX2Q99626 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CDX2Q99626 CCDC188-201ENST00000439765 1475 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
CDX2Q99626 MYOZ3-203ENST00000517768 1451 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CDX2Q99626 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CDX2Q99626 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
CDX2Q99626 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CDX2Q99626 KLC1-227ENST00000634686 2229 ntTSL 5 BASIC20.05■□□□□ 0.8
CDX2Q99626 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CDX2Q99626 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC20.05■□□□□ 0.8
CDX2Q99626 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CDX2Q99626 MPIG6B-202ENST00000375805 668 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
CDX2Q99626 LBH-203ENST00000404397 543 ntTSL 4 BASIC20.05■□□□□ 0.8
CDX2Q99626 LBH-204ENST00000406087 559 ntTSL 4 BASIC20.05■□□□□ 0.8
CDX2Q99626 AP003733.1-201ENST00000491725 852 ntBASIC20.05■□□□□ 0.8
CDX2Q99626 ERCC5-207ENST00000535557 1125 ntTSL 5 BASIC20.05■□□□□ 0.8
CDX2Q99626 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC20.05■□□□□ 0.8
CDX2Q99626 L34079.3-201ENST00000600242 546 ntTSL 4 BASIC20.05■□□□□ 0.8
CDX2Q99626 FAM215A-202ENST00000632077 792 ntBASIC20.05■□□□□ 0.8
CDX2Q99626 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
CDX2Q99626 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC20.05■□□□□ 0.8
CDX2Q99626 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC20.05■□□□□ 0.8
CDX2Q99626 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
CDX2Q99626 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC20.05■□□□□ 0.8
CDX2Q99626 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CDX2Q99626 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CDX2Q99626 MRPS5-201ENST00000272418 1652 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CDX2Q99626 TSPAN15-201ENST00000373290 1698 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CDX2Q99626 TEX264-209ENST00000457573 1448 ntAPPRIS P3 TSL 5 BASIC20.04■□□□□ 0.8
CDX2Q99626 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CDX2Q99626 CCDC71-201ENST00000321895 1781 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CDX2Q99626 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC20.04■□□□□ 0.8
CDX2Q99626 GSTO2-201ENST00000338595 1179 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CDX2Q99626 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC20.04■□□□□ 0.8
CDX2Q99626 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC20.04■□□□□ 0.8
CDX2Q99626 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC20.04■□□□□ 0.8
CDX2Q99626 S100A6-205ENST00000496817 673 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
CDX2Q99626 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC20.04■□□□□ 0.8
CDX2Q99626 AC112497.1-201ENST00000624824 639 ntBASIC20.04■□□□□ 0.8
CDX2Q99626 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
CDX2Q99626 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
CDX2Q99626 CYS1-201ENST00000381813 2738 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
CDX2Q99626 ABHD14A-ACY1-202ENST00000463937 1705 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
CDX2Q99626 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC20.03■□□□□ 0.8
CDX2Q99626 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC20.03■□□□□ 0.8
CDX2Q99626 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CDX2Q99626 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC20.03■□□□□ 0.8
CDX2Q99626 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC20.03■□□□□ 0.8
CDX2Q99626 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC20.03■□□□□ 0.8
CDX2Q99626 AC016876.1-204ENST00000573187 679 ntTSL 3 BASIC20.03■□□□□ 0.8
CDX2Q99626 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC20.03■□□□□ 0.8
CDX2Q99626 TYROBP-209ENST00000589517 415 ntAPPRIS ALT1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CDX2Q99626 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
CDX2Q99626 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC20.03■□□□□ 0.8
CDX2Q99626 FAM197Y3-203ENST00000618346 717 ntBASIC20.03■□□□□ 0.8
CDX2Q99626 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC20.03■□□□□ 0.8
CDX2Q99626 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC20.03■□□□□ 0.8
CDX2Q99626 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC20.03■□□□□ 0.8
CDX2Q99626 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CDX2Q99626 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
CDX2Q99626 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC20.02■□□□□ 0.8
CDX2Q99626 CDIPT-202ENST00000561555 1726 ntTSL 2 BASIC20.02■□□□□ 0.8
CDX2Q99626 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC20.02■□□□□ 0.8
CDX2Q99626 SPIN2B-202ENST00000333933 1258 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CDX2Q99626 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC20.02■□□□□ 0.8
CDX2Q99626 YBX2P1-201ENST00000394192 760 ntBASIC20.02■□□□□ 0.8
CDX2Q99626 DARS-AS1-202ENST00000419808 772 ntTSL 5 BASIC20.02■□□□□ 0.8
CDX2Q99626 MED15P5-201ENST00000423150 992 ntBASIC20.02■□□□□ 0.8
CDX2Q99626 SHF-202ENST00000458022 1163 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.8
CDX2Q99626 NMU-202ENST00000505262 693 ntTSL 3 BASIC20.02■□□□□ 0.8
CDX2Q99626 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC20.02■□□□□ 0.8
CDX2Q99626 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CDX2Q99626 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC20.02■□□□□ 0.8
CDX2Q99626 ANAPC11-204ENST00000571024 668 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
CDX2Q99626 AP005901.3-202ENST00000581653 237 ntBASIC20.02■□□□□ 0.8
CDX2Q99626 ANAPC11-218ENST00000582222 523 ntTSL 2 BASIC20.02■□□□□ 0.8
CDX2Q99626 AL592071.1-201ENST00000611956 408 ntBASIC20.02■□□□□ 0.8
CDX2Q99626 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC20.02■□□□□ 0.8
CDX2Q99626 AC124864.1-201ENST00000623408 392 ntBASIC20.02■□□□□ 0.8
CDX2Q99626 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
CDX2Q99626 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CDX2Q99626 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC20.02■□□□□ 0.8
CDX2Q99626 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC20.02■□□□□ 0.8
CDX2Q99626 AL049796.1-201ENST00000565336 1766 ntBASIC20.02■□□□□ 0.8
CDX2Q99626 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
CDX2Q99626 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
CDX2Q99626 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC20.02■□□□□ 0.79
CDX2Q99626 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.79
CDX2Q99626 AC104109.2-201ENST00000602919 1418 ntBASIC20.02■□□□□ 0.79
CDX2Q99626 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms