Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CSMD3Q7Z407 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC13.34□□□□□ -0.27
CSMD3Q7Z407 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
CSMD3Q7Z407 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC13.34□□□□□ -0.27
CSMD3Q7Z407 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CSMD3Q7Z407 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC13.34□□□□□ -0.27
CSMD3Q7Z407 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC13.34□□□□□ -0.27
CSMD3Q7Z407 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CSMD3Q7Z407 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC13.34□□□□□ -0.27
CSMD3Q7Z407 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC13.34□□□□□ -0.27
CSMD3Q7Z407 PPIE-208ENST00000470213 927 ntTSL 3 BASIC13.34□□□□□ -0.27
CSMD3Q7Z407 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC13.34□□□□□ -0.27
CSMD3Q7Z407 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC13.34□□□□□ -0.27
CSMD3Q7Z407 TNNT1-204ENST00000585321 995 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
CSMD3Q7Z407 TMEM70-201ENST00000312184 2018 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CSMD3Q7Z407 APBB1-207ENST00000529519 1442 ntTSL 5 BASIC13.34□□□□□ -0.27
CSMD3Q7Z407 ME2-216ENST00000639850 2331 ntTSL 5 BASIC13.34□□□□□ -0.27
CSMD3Q7Z407 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CSMD3Q7Z407 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC13.34□□□□□ -0.27
CSMD3Q7Z407 TSPY22P-201ENST00000427496 604 ntBASIC13.34□□□□□ -0.27
CSMD3Q7Z407 RPP21-221ENST00000428040 594 ntTSL 2 BASIC13.34□□□□□ -0.27
CSMD3Q7Z407 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC13.34□□□□□ -0.27
CSMD3Q7Z407 TSSC2-201ENST00000450217 709 ntBASIC13.34□□□□□ -0.27
CSMD3Q7Z407 AC034232.1-201ENST00000506026 1064 ntBASIC13.34□□□□□ -0.27
CSMD3Q7Z407 Metazoa_SRP.104-201ENST00000622099 280 ntBASIC13.34□□□□□ -0.27
CSMD3Q7Z407 C10orf142-202ENST00000623589 1010 ntAPPRIS ALT2 TSL 5 BASIC13.34□□□□□ -0.27
CSMD3Q7Z407 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.27
CSMD3Q7Z407 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
CSMD3Q7Z407 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC13.33□□□□□ -0.27
CSMD3Q7Z407 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC13.33□□□□□ -0.27
CSMD3Q7Z407 HOXB8-201ENST00000239144 1823 ntAPPRIS P2 TSL 2 BASIC13.33□□□□□ -0.27
CSMD3Q7Z407 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.27
CSMD3Q7Z407 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
CSMD3Q7Z407 TAX1BP3-202ENST00000611779 1302 ntTSL 2 BASIC13.33□□□□□ -0.28
CSMD3Q7Z407 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC13.33□□□□□ -0.28
CSMD3Q7Z407 MYD88-206ENST00000443433 914 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
CSMD3Q7Z407 AC093525.10-201ENST00000625130 1569 ntBASIC13.33□□□□□ -0.28
CSMD3Q7Z407 MTFR1L-203ENST00000374303 2004 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CSMD3Q7Z407 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC13.33□□□□□ -0.28
CSMD3Q7Z407 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC13.33□□□□□ -0.28
CSMD3Q7Z407 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC13.33□□□□□ -0.28
CSMD3Q7Z407 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC13.33□□□□□ -0.28
CSMD3Q7Z407 AL160237.2-201ENST00000556165 472 ntBASIC13.33□□□□□ -0.28
CSMD3Q7Z407 AC091304.2-201ENST00000564639 760 ntBASIC13.33□□□□□ -0.28
CSMD3Q7Z407 C6orf203-202ENST00000405204 1420 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
CSMD3Q7Z407 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC13.33□□□□□ -0.28
CSMD3Q7Z407 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC13.33□□□□□ -0.28
CSMD3Q7Z407 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
CSMD3Q7Z407 PDLIM2-205ENST00000397761 1491 ntAPPRIS P1 TSL 5 BASIC13.33□□□□□ -0.28
CSMD3Q7Z407 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC13.33□□□□□ -0.28
CSMD3Q7Z407 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC13.33□□□□□ -0.28
CSMD3Q7Z407 AL512408.1-201ENST00000569378 2000 ntBASIC13.33□□□□□ -0.28
CSMD3Q7Z407 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC13.33□□□□□ -0.28
CSMD3Q7Z407 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC13.32□□□□□ -0.28
CSMD3Q7Z407 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
CSMD3Q7Z407 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
CSMD3Q7Z407 SIT1-201ENST00000259608 1231 ntAPPRIS P2 TSL 1 (best) BASIC13.32□□□□□ -0.28
CSMD3Q7Z407 TMEM190-201ENST00000291934 593 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CSMD3Q7Z407 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC13.32□□□□□ -0.28
CSMD3Q7Z407 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
CSMD3Q7Z407 BMF-207ENST00000559701 630 ntTSL 3 BASIC13.32□□□□□ -0.28
CSMD3Q7Z407 REXO1L6P-202ENST00000619970 1078 ntBASIC13.32□□□□□ -0.28
CSMD3Q7Z407 GPAT2P1-201ENST00000444924 1672 ntBASIC13.32□□□□□ -0.28
CSMD3Q7Z407 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
CSMD3Q7Z407 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC13.32□□□□□ -0.28
CSMD3Q7Z407 PGAP1-204ENST00000409475 2443 ntTSL 2 BASIC13.32□□□□□ -0.28
CSMD3Q7Z407 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
CSMD3Q7Z407 AC007220.1-201ENST00000572466 1055 ntTSL 3 BASIC13.32□□□□□ -0.28
CSMD3Q7Z407 BORCS8-206ENST00000585679 801 ntTSL 3 BASIC13.32□□□□□ -0.28
CSMD3Q7Z407 VPS51-217ENST00000639871 243 ntTSL 5 BASIC13.32□□□□□ -0.28
CSMD3Q7Z407 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CSMD3Q7Z407 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.28
CSMD3Q7Z407 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
CSMD3Q7Z407 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
CSMD3Q7Z407 CRTC3-208ENST00000560098 1421 ntTSL 1 (best) BASIC13.32□□□□□ -0.28
CSMD3Q7Z407 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CSMD3Q7Z407 CRELD2-202ENST00000403427 1242 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
CSMD3Q7Z407 MHENCR-202ENST00000449500 801 ntTSL 2 BASIC13.31□□□□□ -0.28
CSMD3Q7Z407 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC13.31□□□□□ -0.28
CSMD3Q7Z407 AP000867.3-201ENST00000524675 377 ntBASIC13.31□□□□□ -0.28
CSMD3Q7Z407 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC13.31□□□□□ -0.28
CSMD3Q7Z407 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC13.31□□□□□ -0.28
CSMD3Q7Z407 YPEL3-202ENST00000398841 1588 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
CSMD3Q7Z407 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC13.31□□□□□ -0.28
CSMD3Q7Z407 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CSMD3Q7Z407 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CSMD3Q7Z407 GPR35-202ENST00000403859 2032 ntAPPRIS P3 TSL 2 BASIC13.31□□□□□ -0.28
CSMD3Q7Z407 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CSMD3Q7Z407 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
CSMD3Q7Z407 NUS1P1-201ENST00000446295 882 ntBASIC13.31□□□□□ -0.28
CSMD3Q7Z407 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
CSMD3Q7Z407 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC13.31□□□□□ -0.28
CSMD3Q7Z407 AL121912.1-201ENST00000603683 238 ntBASIC13.31□□□□□ -0.28
CSMD3Q7Z407 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
CSMD3Q7Z407 MAP2K5-202ENST00000340972 1491 ntTSL 2 BASIC13.31□□□□□ -0.28
CSMD3Q7Z407 SPON2-201ENST00000290902 1869 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CSMD3Q7Z407 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
CSMD3Q7Z407 APBB1IP-201ENST00000356785 1513 ntTSL 1 (best) BASIC13.31□□□□□ -0.28
CSMD3Q7Z407 SHB-201ENST00000377707 2783 ntAPPRIS P1 TSL 1 (best) BASIC13.31□□□□□ -0.28
CSMD3Q7Z407 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC13.31□□□□□ -0.28
Retrieved 100 of 98,524 protein–RNA pairs in 33.5 ms