Protein–RNA interactions for Protein: Q5M7Z0

RNFT1, E3 ubiquitin-protein ligase RNFT1, humanhuman

Predictions only

Length 435 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNFT1Q5M7Z0 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
RNFT1Q5M7Z0 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
RNFT1Q5M7Z0 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
RNFT1Q5M7Z0 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
RNFT1Q5M7Z0 LINC01521-201ENST00000504184 1943 ntBASIC17.25■□□□□ 0.35
RNFT1Q5M7Z0 C11orf49-201ENST00000278460 1645 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
RNFT1Q5M7Z0 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RNFT1Q5M7Z0 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
RNFT1Q5M7Z0 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RNFT1Q5M7Z0 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RNFT1Q5M7Z0 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RNFT1Q5M7Z0 BUB3-202ENST00000368859 667 ntTSL 3 BASIC17.25■□□□□ 0.35
RNFT1Q5M7Z0 AC074183.1-201ENST00000439105 782 ntTSL 5 BASIC17.25■□□□□ 0.35
RNFT1Q5M7Z0 MOK-234ENST00000524370 1165 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
RNFT1Q5M7Z0 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
RNFT1Q5M7Z0 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC17.25■□□□□ 0.35
RNFT1Q5M7Z0 AC243829.1-201ENST00000615128 1059 ntTSL 2 BASIC17.25■□□□□ 0.35
RNFT1Q5M7Z0 AL031432.5-201ENST00000641059 760 ntBASIC17.25■□□□□ 0.35
RNFT1Q5M7Z0 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
RNFT1Q5M7Z0 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
RNFT1Q5M7Z0 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RNFT1Q5M7Z0 OGG1-201ENST00000302003 1655 ntAPPRIS P4 TSL 1 (best) BASIC17.25■□□□□ 0.35
RNFT1Q5M7Z0 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RNFT1Q5M7Z0 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RNFT1Q5M7Z0 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RNFT1Q5M7Z0 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC17.25■□□□□ 0.35
RNFT1Q5M7Z0 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
RNFT1Q5M7Z0 ZFC3H1-206ENST00000548100 1771 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
RNFT1Q5M7Z0 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
RNFT1Q5M7Z0 MTX1-202ENST00000368376 1632 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
RNFT1Q5M7Z0 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC17.25■□□□□ 0.35
RNFT1Q5M7Z0 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC17.25■□□□□ 0.35
RNFT1Q5M7Z0 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC17.25■□□□□ 0.35
RNFT1Q5M7Z0 PWWP2AP1-201ENST00000429776 2273 ntBASIC17.24■□□□□ 0.35
RNFT1Q5M7Z0 OR13J1-201ENST00000377981 1339 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
RNFT1Q5M7Z0 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC17.24■□□□□ 0.35
RNFT1Q5M7Z0 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC17.24■□□□□ 0.35
RNFT1Q5M7Z0 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
RNFT1Q5M7Z0 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC17.24■□□□□ 0.35
RNFT1Q5M7Z0 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC17.24■□□□□ 0.35
RNFT1Q5M7Z0 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC17.24■□□□□ 0.35
RNFT1Q5M7Z0 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
RNFT1Q5M7Z0 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC17.24■□□□□ 0.35
RNFT1Q5M7Z0 AC009947.2-201ENST00000444014 672 ntBASIC17.24■□□□□ 0.35
RNFT1Q5M7Z0 KRT18P38-201ENST00000449496 1282 ntBASIC17.24■□□□□ 0.35
RNFT1Q5M7Z0 AL359075.1-203ENST00000462729 1002 ntBASIC17.24■□□□□ 0.35
RNFT1Q5M7Z0 RAP1B-229ENST00000543393 874 ntTSL 3 BASIC17.24■□□□□ 0.35
RNFT1Q5M7Z0 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC17.24■□□□□ 0.35
RNFT1Q5M7Z0 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC17.24■□□□□ 0.35
RNFT1Q5M7Z0 AC008622.2-201ENST00000617006 1229 ntBASIC17.24■□□□□ 0.35
RNFT1Q5M7Z0 AC064853.5-201ENST00000641976 258 ntAPPRIS P1 BASIC17.24■□□□□ 0.35
RNFT1Q5M7Z0 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC17.24■□□□□ 0.35
RNFT1Q5M7Z0 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC17.24■□□□□ 0.35
RNFT1Q5M7Z0 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
RNFT1Q5M7Z0 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
RNFT1Q5M7Z0 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RNFT1Q5M7Z0 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
RNFT1Q5M7Z0 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
RNFT1Q5M7Z0 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC17.24■□□□□ 0.35
RNFT1Q5M7Z0 DPF1-217ENST00000614244 2356 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
RNFT1Q5M7Z0 DMPK-203ENST00000354227 1982 ntTSL 2 BASIC17.24■□□□□ 0.35
RNFT1Q5M7Z0 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
RNFT1Q5M7Z0 RPL7-202ENST00000396465 1308 ntTSL 3 BASIC17.23■□□□□ 0.35
RNFT1Q5M7Z0 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC17.23■□□□□ 0.35
RNFT1Q5M7Z0 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC17.23■□□□□ 0.35
RNFT1Q5M7Z0 NCK2-205ENST00000451463 1795 ntTSL 2 BASIC17.23■□□□□ 0.35
RNFT1Q5M7Z0 CD151-201ENST00000322008 1548 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
RNFT1Q5M7Z0 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
RNFT1Q5M7Z0 PHB2-203ENST00000535923 1515 ntAPPRIS P2 TSL 5 BASIC17.23■□□□□ 0.35
RNFT1Q5M7Z0 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
RNFT1Q5M7Z0 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC17.23■□□□□ 0.35
RNFT1Q5M7Z0 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC17.23■□□□□ 0.35
RNFT1Q5M7Z0 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RNFT1Q5M7Z0 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC17.23■□□□□ 0.35
RNFT1Q5M7Z0 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC17.23■□□□□ 0.35
RNFT1Q5M7Z0 PHB2-202ENST00000440277 996 ntTSL 5 BASIC17.23■□□□□ 0.35
RNFT1Q5M7Z0 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC17.23■□□□□ 0.35
RNFT1Q5M7Z0 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC17.23■□□□□ 0.35
RNFT1Q5M7Z0 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC17.23■□□□□ 0.35
RNFT1Q5M7Z0 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC17.23■□□□□ 0.35
RNFT1Q5M7Z0 JOSD2-204ENST00000598418 996 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RNFT1Q5M7Z0 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RNFT1Q5M7Z0 CHMP4A-201ENST00000347519 1393 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
RNFT1Q5M7Z0 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
RNFT1Q5M7Z0 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RNFT1Q5M7Z0 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC17.23■□□□□ 0.35
RNFT1Q5M7Z0 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
RNFT1Q5M7Z0 HIKESHI-207ENST00000533986 1694 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
RNFT1Q5M7Z0 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
RNFT1Q5M7Z0 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC17.22■□□□□ 0.35
RNFT1Q5M7Z0 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
RNFT1Q5M7Z0 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC17.22■□□□□ 0.35
RNFT1Q5M7Z0 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
RNFT1Q5M7Z0 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC17.22■□□□□ 0.35
RNFT1Q5M7Z0 EVC-201ENST00000264956 6431 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
RNFT1Q5M7Z0 MOK-201ENST00000361847 1940 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
RNFT1Q5M7Z0 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
RNFT1Q5M7Z0 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
RNFT1Q5M7Z0 COMTD1-201ENST00000372538 976 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
RNFT1Q5M7Z0 HOMER2P1-201ENST00000455653 964 ntBASIC17.22■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 25.1 ms