Protein–RNA interactions for Protein: Q02388

COL7A1, Collagen alpha-1(VII) chain, humanhuman

Predictions only

Length 2,944 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1Q02388 AC074051.2-201ENST00000565115 352 ntBASIC13.72□□□□□ -0.21
COL7A1Q02388 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC13.72□□□□□ -0.21
COL7A1Q02388 AL139424.1-201ENST00000607572 797 ntBASIC13.72□□□□□ -0.21
COL7A1Q02388 LINC01197-204ENST00000611265 956 ntTSL 5 BASIC13.72□□□□□ -0.21
COL7A1Q02388 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC13.72□□□□□ -0.21
COL7A1Q02388 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
COL7A1Q02388 FBXO27-207ENST00000600828 1557 ntAPPRIS ALT1 TSL 5 BASIC13.72□□□□□ -0.21
COL7A1Q02388 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC13.72□□□□□ -0.21
COL7A1Q02388 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC13.72□□□□□ -0.21
COL7A1Q02388 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
COL7A1Q02388 CCDC134-201ENST00000255784 1270 ntAPPRIS P1 TSL 1 (best) BASIC13.72□□□□□ -0.21
COL7A1Q02388 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
COL7A1Q02388 ZBED5-AS1-202ENST00000529014 771 ntTSL 5 BASIC13.72□□□□□ -0.21
COL7A1Q02388 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC13.72□□□□□ -0.21
COL7A1Q02388 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC13.72□□□□□ -0.21
COL7A1Q02388 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC13.72□□□□□ -0.21
COL7A1Q02388 RNF126P1-202ENST00000569893 925 ntBASIC13.72□□□□□ -0.21
COL7A1Q02388 AP005901.3-202ENST00000581653 237 ntBASIC13.72□□□□□ -0.21
COL7A1Q02388 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC13.72□□□□□ -0.21
COL7A1Q02388 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC13.72□□□□□ -0.21
COL7A1Q02388 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC13.72□□□□□ -0.21
COL7A1Q02388 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC13.72□□□□□ -0.21
COL7A1Q02388 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
COL7A1Q02388 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC13.71□□□□□ -0.21
COL7A1Q02388 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
COL7A1Q02388 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC13.71□□□□□ -0.21
COL7A1Q02388 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.21
COL7A1Q02388 NSUN5P1-208ENST00000473960 500 ntTSL 3 BASIC13.71□□□□□ -0.21
COL7A1Q02388 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.21
COL7A1Q02388 CFL1-212ENST00000531413 636 ntTSL 3 BASIC13.71□□□□□ -0.21
COL7A1Q02388 ABR-204ENST00000543210 1049 ntTSL 2 BASIC13.71□□□□□ -0.21
COL7A1Q02388 AC092338.2-202ENST00000567158 611 ntTSL 5 BASIC13.71□□□□□ -0.21
COL7A1Q02388 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC13.71□□□□□ -0.21
COL7A1Q02388 CLN3-259ENST00000637551 1083 ntTSL 5 BASIC13.71□□□□□ -0.21
COL7A1Q02388 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
COL7A1Q02388 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
COL7A1Q02388 BID-203ENST00000399765 1879 ntTSL 2 BASIC13.71□□□□□ -0.21
COL7A1Q02388 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC13.71□□□□□ -0.21
COL7A1Q02388 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC13.71□□□□□ -0.21
COL7A1Q02388 SEC11C-202ENST00000509791 2054 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
COL7A1Q02388 DUSP1-201ENST00000239223 2019 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
COL7A1Q02388 MOS-201ENST00000311923 1041 ntAPPRIS P1 BASIC13.71□□□□□ -0.21
COL7A1Q02388 FAM220CP-201ENST00000395253 831 ntBASIC13.71□□□□□ -0.21
COL7A1Q02388 PHKG2-202ENST00000424889 1566 ntTSL 2 BASIC13.71□□□□□ -0.21
COL7A1Q02388 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC13.71□□□□□ -0.21
COL7A1Q02388 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.21
COL7A1Q02388 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC13.71□□□□□ -0.21
COL7A1Q02388 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC13.71□□□□□ -0.21
COL7A1Q02388 AL157888.1-201ENST00000631930 593 ntBASIC13.71□□□□□ -0.21
COL7A1Q02388 DUSP7-202ENST00000495880 3340 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
COL7A1Q02388 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
COL7A1Q02388 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC13.71□□□□□ -0.22
COL7A1Q02388 AC124066.1-201ENST00000581122 1660 ntTSL 5 BASIC13.71□□□□□ -0.22
COL7A1Q02388 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.22
COL7A1Q02388 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC13.71□□□□□ -0.22
COL7A1Q02388 PAOX-201ENST00000278060 1858 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
COL7A1Q02388 RPS6KB2-201ENST00000312629 1733 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
COL7A1Q02388 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC13.71□□□□□ -0.22
COL7A1Q02388 CXorf49-202ENST00000535490 1715 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.22
COL7A1Q02388 CXorf49B-202ENST00000542739 1715 ntAPPRIS P1 TSL 5 BASIC13.71□□□□□ -0.22
COL7A1Q02388 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
COL7A1Q02388 PIGQ-204ENST00000409527 1915 ntAPPRIS P1 TSL 2 BASIC13.71□□□□□ -0.22
COL7A1Q02388 ANKRD2-202ENST00000307518 1449 ntAPPRIS P1 TSL 1 (best) BASIC13.71□□□□□ -0.22
COL7A1Q02388 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC13.7□□□□□ -0.22
COL7A1Q02388 GAR1-202ENST00000394631 1011 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL7A1Q02388 AC005104.2-201ENST00000427818 678 ntBASIC13.7□□□□□ -0.22
COL7A1Q02388 KRT18P67-201ENST00000432816 1264 ntBASIC13.7□□□□□ -0.22
COL7A1Q02388 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL7A1Q02388 BCS1L-201ENST00000359273 1454 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL7A1Q02388 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
COL7A1Q02388 AKR7A3-201ENST00000361640 1710 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL7A1Q02388 SLC7A10-201ENST00000253188 1946 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL7A1Q02388 CERS4-201ENST00000251363 1797 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL7A1Q02388 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC13.7□□□□□ -0.22
COL7A1Q02388 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL7A1Q02388 AKR1C7P-201ENST00000305623 895 ntBASIC13.7□□□□□ -0.22
COL7A1Q02388 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC13.7□□□□□ -0.22
COL7A1Q02388 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC13.7□□□□□ -0.22
COL7A1Q02388 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC13.7□□□□□ -0.22
COL7A1Q02388 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
COL7A1Q02388 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL7A1Q02388 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC13.7□□□□□ -0.22
COL7A1Q02388 AC139887.3-201ENST00000568585 713 ntBASIC13.7□□□□□ -0.22
COL7A1Q02388 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC13.7□□□□□ -0.22
COL7A1Q02388 AC027796.2-201ENST00000575326 344 ntBASIC13.7□□□□□ -0.22
COL7A1Q02388 AC036176.1-201ENST00000589905 785 ntTSL 2 BASIC13.7□□□□□ -0.22
COL7A1Q02388 IRF5-202ENST00000357234 1680 ntTSL 1 (best) BASIC13.7□□□□□ -0.22
COL7A1Q02388 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL7A1Q02388 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL7A1Q02388 AC011511.1-201ENST00000452032 1956 ntAPPRIS P1 TSL 2 BASIC13.7□□□□□ -0.22
COL7A1Q02388 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL7A1Q02388 ABHD14B-204ENST00000461108 1397 ntTSL 2 BASIC13.7□□□□□ -0.22
COL7A1Q02388 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC13.7□□□□□ -0.22
COL7A1Q02388 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL7A1Q02388 KRT16P6-202ENST00000425692 1426 ntBASIC13.7□□□□□ -0.22
COL7A1Q02388 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC13.7□□□□□ -0.22
COL7A1Q02388 KLK12-201ENST00000250351 882 ntAPPRIS P4 TSL 5 BASIC13.7□□□□□ -0.22
COL7A1Q02388 DFFB-203ENST00000341385 572 ntTSL 5 BASIC13.7□□□□□ -0.22
COL7A1Q02388 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC13.7□□□□□ -0.22
COL7A1Q02388 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC13.7□□□□□ -0.22
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms