Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC19.21■□□□□ 0.67
PTPN4P29074 REEP2-201ENST00000254901 2099 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
PTPN4P29074 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC19.21■□□□□ 0.67
PTPN4P29074 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC19.21■□□□□ 0.67
PTPN4P29074 PGAM1-201ENST00000334828 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
PTPN4P29074 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.66
PTPN4P29074 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC19.2■□□□□ 0.66
PTPN4P29074 TMEM8B-204ENST00000439587 2150 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
PTPN4P29074 USP48-204ENST00000400301 4309 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
PTPN4P29074 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
PTPN4P29074 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PTPN4P29074 FAM83E-201ENST00000263266 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PTPN4P29074 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
PTPN4P29074 AP000997.3-201ENST00000623333 2250 ntBASIC19.2■□□□□ 0.66
PTPN4P29074 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC19.2■□□□□ 0.66
PTPN4P29074 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC19.2■□□□□ 0.66
PTPN4P29074 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
PTPN4P29074 ARL16-209ENST00000573715 763 ntTSL 3 BASIC19.2■□□□□ 0.66
PTPN4P29074 ARL16-211ENST00000576135 694 ntTSL 3 BASIC19.2■□□□□ 0.66
PTPN4P29074 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC19.2■□□□□ 0.66
PTPN4P29074 P2RY6-203ENST00000393591 1829 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
PTPN4P29074 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
PTPN4P29074 ST6GALNAC6-215ENST00000542456 2018 ntTSL 2 BASIC19.2■□□□□ 0.66
PTPN4P29074 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC19.2■□□□□ 0.66
PTPN4P29074 PTPA-201ENST00000337738 2845 ntTSL 2 BASIC19.2■□□□□ 0.66
PTPN4P29074 LONRF1-208ENST00000533751 3043 ntTSL 5 BASIC19.19■□□□□ 0.66
PTPN4P29074 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
PTPN4P29074 KIAA1456-201ENST00000400069 1982 ntTSL 2 BASIC19.19■□□□□ 0.66
PTPN4P29074 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC19.19■□□□□ 0.66
PTPN4P29074 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PTPN4P29074 CASTOR1-202ENST00000407689 1623 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PTPN4P29074 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
PTPN4P29074 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
PTPN4P29074 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC19.19■□□□□ 0.66
PTPN4P29074 VKORC1-204ENST00000394971 664 ntTSL 5 BASIC19.19■□□□□ 0.66
PTPN4P29074 POM121L13P-201ENST00000422362 380 ntBASIC19.19■□□□□ 0.66
PTPN4P29074 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
PTPN4P29074 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC19.19■□□□□ 0.66
PTPN4P29074 AC069544.1-201ENST00000609399 999 ntBASIC19.19■□□□□ 0.66
PTPN4P29074 NEURL3-202ENST00000435380 1675 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
PTPN4P29074 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
PTPN4P29074 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
PTPN4P29074 ZBTB8A-201ENST00000316459 1943 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
PTPN4P29074 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
PTPN4P29074 CDH23-212ENST00000616684 4814 ntTSL 5 BASIC19.19■□□□□ 0.66
PTPN4P29074 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC19.19■□□□□ 0.66
PTPN4P29074 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC19.19■□□□□ 0.66
PTPN4P29074 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
PTPN4P29074 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
PTPN4P29074 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
PTPN4P29074 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC19.18■□□□□ 0.66
PTPN4P29074 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC19.18■□□□□ 0.66
PTPN4P29074 SYT7-208ENST00000542670 1887 ntTSL 5 BASIC19.18■□□□□ 0.66
PTPN4P29074 CCNJ-202ENST00000403870 2830 ntTSL 5 BASIC19.18■□□□□ 0.66
PTPN4P29074 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
PTPN4P29074 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
PTPN4P29074 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
PTPN4P29074 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC19.18■□□□□ 0.66
PTPN4P29074 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC19.18■□□□□ 0.66
PTPN4P29074 AC233263.1-201ENST00000578059 224 ntBASIC19.18■□□□□ 0.66
PTPN4P29074 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC19.18■□□□□ 0.66
PTPN4P29074 KLHL35-201ENST00000376292 1500 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
PTPN4P29074 NUDT4-202ENST00000415493 4839 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PTPN4P29074 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PTPN4P29074 SLC31A2-201ENST00000259392 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PTPN4P29074 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PTPN4P29074 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC19.18■□□□□ 0.66
PTPN4P29074 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PTPN4P29074 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
PTPN4P29074 ACADS-202ENST00000411593 1398 ntTSL 2 BASIC19.18■□□□□ 0.66
PTPN4P29074 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
PTPN4P29074 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
PTPN4P29074 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC19.18■□□□□ 0.66
PTPN4P29074 PNKP-215ENST00000600910 1600 ntTSL 5 BASIC19.18■□□□□ 0.66
PTPN4P29074 RUVBL2-211ENST00000601968 1641 ntTSL 5 BASIC19.18■□□□□ 0.66
PTPN4P29074 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC19.18■□□□□ 0.66
PTPN4P29074 USP49-202ENST00000373010 2446 ntTSL 5 BASIC19.17■□□□□ 0.66
PTPN4P29074 WNT5B-201ENST00000310594 2184 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PTPN4P29074 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PTPN4P29074 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC19.17■□□□□ 0.66
PTPN4P29074 RAP1GAP-204ENST00000374761 3318 ntTSL 5 BASIC19.17■□□□□ 0.66
PTPN4P29074 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PTPN4P29074 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
PTPN4P29074 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC19.17■□□□□ 0.66
PTPN4P29074 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PTPN4P29074 AVP-201ENST00000380293 619 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PTPN4P29074 MIR718-201ENST00000390190 70 ntBASIC19.17■□□□□ 0.66
PTPN4P29074 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC19.17■□□□□ 0.66
PTPN4P29074 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC19.17■□□□□ 0.66
PTPN4P29074 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC19.17■□□□□ 0.66
PTPN4P29074 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC19.17■□□□□ 0.66
PTPN4P29074 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC19.17■□□□□ 0.66
PTPN4P29074 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC19.17■□□□□ 0.66
PTPN4P29074 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC19.17■□□□□ 0.66
PTPN4P29074 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC19.17■□□□□ 0.66
PTPN4P29074 BRWD1-AS2-201ENST00000603064 1028 ntBASIC19.17■□□□□ 0.66
PTPN4P29074 UBE2Q2-204ENST00000561851 1582 ntTSL 2 BASIC19.17■□□□□ 0.66
PTPN4P29074 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PTPN4P29074 TWF1-201ENST00000395510 3045 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
PTPN4P29074 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC19.17■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms