Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HLA-DQA1P01909 TFEB-206ENST00000403298 2162 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
HLA-DQA1P01909 AC141586.5-201ENST00000624546 2050 ntBASIC14.4□□□□□ -0.1
HLA-DQA1P01909 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
HLA-DQA1P01909 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
HLA-DQA1P01909 FGF16-201ENST00000439435 1650 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HLA-DQA1P01909 HOXA4-202ENST00000428284 1595 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
HLA-DQA1P01909 TNIP1-221ENST00000610874 2629 ntTSL 5 BASIC14.4□□□□□ -0.1
HLA-DQA1P01909 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
HLA-DQA1P01909 RSBN1-205ENST00000615321 2418 ntTSL 2 BASIC14.4□□□□□ -0.1
HLA-DQA1P01909 TCTN1-225ENST00000551590 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
HLA-DQA1P01909 RASA4CP-201ENST00000424092 1398 ntBASIC14.4□□□□□ -0.1
HLA-DQA1P01909 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
HLA-DQA1P01909 MIR939-201ENST00000401314 82 ntBASIC14.4□□□□□ -0.1
HLA-DQA1P01909 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC14.4□□□□□ -0.1
HLA-DQA1P01909 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC14.4□□□□□ -0.1
HLA-DQA1P01909 ESPNP-201ENST00000270691 2015 ntBASIC14.4□□□□□ -0.1
HLA-DQA1P01909 HGFAC-204ENST00000511533 2016 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
HLA-DQA1P01909 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC14.4□□□□□ -0.1
HLA-DQA1P01909 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
HLA-DQA1P01909 CD248-201ENST00000311330 2558 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
HLA-DQA1P01909 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
HLA-DQA1P01909 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
HLA-DQA1P01909 GHDC-212ENST00000593209 1827 ntTSL 5 BASIC14.4□□□□□ -0.1
HLA-DQA1P01909 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC14.4□□□□□ -0.1
HLA-DQA1P01909 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
HLA-DQA1P01909 ADRA1A-205ENST00000380582 2089 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
HLA-DQA1P01909 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HLA-DQA1P01909 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
HLA-DQA1P01909 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC14.4□□□□□ -0.11
HLA-DQA1P01909 ENC1-207ENST00000618628 5657 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
HLA-DQA1P01909 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HLA-DQA1P01909 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HLA-DQA1P01909 AC138028.1-201ENST00000333666 2137 ntTSL 2 BASIC14.39□□□□□ -0.11
HLA-DQA1P01909 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HLA-DQA1P01909 AL138752.2-201ENST00000540557 2591 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
HLA-DQA1P01909 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
HLA-DQA1P01909 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
HLA-DQA1P01909 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
HLA-DQA1P01909 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HLA-DQA1P01909 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HLA-DQA1P01909 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
HLA-DQA1P01909 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HLA-DQA1P01909 SYNE3-202ENST00000553340 2615 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
HLA-DQA1P01909 SLC27A2-202ENST00000380902 2181 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
HLA-DQA1P01909 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HLA-DQA1P01909 MCIDAS-201ENST00000513312 1736 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HLA-DQA1P01909 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
HLA-DQA1P01909 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
HLA-DQA1P01909 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC14.39□□□□□ -0.11
HLA-DQA1P01909 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC14.39□□□□□ -0.11
HLA-DQA1P01909 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
HLA-DQA1P01909 MPST-208ENST00000628507 698 ntTSL 5 BASIC14.39□□□□□ -0.11
HLA-DQA1P01909 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HLA-DQA1P01909 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC14.39□□□□□ -0.11
HLA-DQA1P01909 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
HLA-DQA1P01909 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HLA-DQA1P01909 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HLA-DQA1P01909 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
HLA-DQA1P01909 GPR142-201ENST00000335666 1437 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HLA-DQA1P01909 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
HLA-DQA1P01909 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
HLA-DQA1P01909 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
HLA-DQA1P01909 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
HLA-DQA1P01909 NF2-202ENST00000338641 6025 ntAPPRIS P4 TSL 1 (best) BASIC14.39□□□□□ -0.11
HLA-DQA1P01909 ARID1A-205ENST00000457599 6268 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
HLA-DQA1P01909 NRBP1-204ENST00000379863 2174 ntTSL 5 BASIC14.39□□□□□ -0.11
HLA-DQA1P01909 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC14.39□□□□□ -0.11
HLA-DQA1P01909 AL162741.1-201ENST00000565563 1558 ntBASIC14.39□□□□□ -0.11
HLA-DQA1P01909 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HLA-DQA1P01909 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
HLA-DQA1P01909 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC14.38□□□□□ -0.11
HLA-DQA1P01909 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
HLA-DQA1P01909 ANGPTL4-201ENST00000301455 1879 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HLA-DQA1P01909 GNAS-203ENST00000306120 1878 ntBASIC14.38□□□□□ -0.11
HLA-DQA1P01909 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
HLA-DQA1P01909 P2RX2-208ENST00000542301 1881 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
HLA-DQA1P01909 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HLA-DQA1P01909 TLCD2-201ENST00000330676 5971 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
HLA-DQA1P01909 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HLA-DQA1P01909 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
HLA-DQA1P01909 HGFAC-201ENST00000382774 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HLA-DQA1P01909 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
HLA-DQA1P01909 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
HLA-DQA1P01909 ATXN7L2-202ENST00000369870 2318 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HLA-DQA1P01909 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC14.38□□□□□ -0.11
HLA-DQA1P01909 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
HLA-DQA1P01909 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
HLA-DQA1P01909 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC14.38□□□□□ -0.11
HLA-DQA1P01909 GOSR2-226ENST00000639287 2367 ntTSL 5 BASIC14.38□□□□□ -0.11
HLA-DQA1P01909 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
HLA-DQA1P01909 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
HLA-DQA1P01909 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC14.37□□□□□ -0.11
HLA-DQA1P01909 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
HLA-DQA1P01909 WIPF1-202ENST00000359761 2003 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
HLA-DQA1P01909 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
HLA-DQA1P01909 SCYL1-203ENST00000420247 2583 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
HLA-DQA1P01909 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC14.37□□□□□ -0.11
HLA-DQA1P01909 NCOA6-207ENST00000616167 3271 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
HLA-DQA1P01909 GNB4-204ENST00000468623 1360 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms