Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 SYTL1-210ENST00000616558 1878 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
TNFP01375 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC18.71■□□□□ 0.59
TNFP01375 COL15A1-201ENST00000375001 5496 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
TNFP01375 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
TNFP01375 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
TNFP01375 FAM87B-201ENST00000326734 1947 ntTSL 2 BASIC18.71■□□□□ 0.59
TNFP01375 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.59
TNFP01375 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
TNFP01375 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
TNFP01375 CD7-201ENST00000312648 1281 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
TNFP01375 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
TNFP01375 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
TNFP01375 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC18.71■□□□□ 0.59
TNFP01375 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
TNFP01375 BUB3-202ENST00000368859 667 ntTSL 3 BASIC18.71■□□□□ 0.59
TNFP01375 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC18.71■□□□□ 0.59
TNFP01375 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC18.71■□□□□ 0.59
TNFP01375 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC18.71■□□□□ 0.59
TNFP01375 ST20-202ENST00000485386 529 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
TNFP01375 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC18.71■□□□□ 0.59
TNFP01375 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC18.71■□□□□ 0.59
TNFP01375 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
TNFP01375 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC18.71■□□□□ 0.59
TNFP01375 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
TNFP01375 MAP3K11-210ENST00000532507 1812 ntTSL 2 BASIC18.71■□□□□ 0.59
TNFP01375 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC18.71■□□□□ 0.59
TNFP01375 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC18.71■□□□□ 0.59
TNFP01375 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
TNFP01375 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
TNFP01375 ASMTL-202ENST00000381333 2035 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
TNFP01375 DBNL-219ENST00000490734 2004 ntTSL 2 BASIC18.71■□□□□ 0.59
TNFP01375 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC18.71■□□□□ 0.59
TNFP01375 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC18.7■□□□□ 0.58
TNFP01375 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC18.7■□□□□ 0.58
TNFP01375 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TNFP01375 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC18.7■□□□□ 0.58
TNFP01375 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC18.7■□□□□ 0.58
TNFP01375 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC18.7■□□□□ 0.58
TNFP01375 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TNFP01375 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TNFP01375 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
TNFP01375 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
TNFP01375 CFL1-201ENST00000308162 1234 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TNFP01375 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
TNFP01375 TSPY5P-201ENST00000426936 936 ntBASIC18.7■□□□□ 0.58
TNFP01375 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
TNFP01375 RNF146-204ENST00000476956 884 ntTSL 2 BASIC18.7■□□□□ 0.58
TNFP01375 YBX1P2-201ENST00000489612 999 ntBASIC18.7■□□□□ 0.58
TNFP01375 AC063952.2-201ENST00000498792 1227 ntBASIC18.7■□□□□ 0.58
TNFP01375 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
TNFP01375 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC18.7■□□□□ 0.58
TNFP01375 DCTN5-208ENST00000568589 772 ntTSL 2 BASIC18.7■□□□□ 0.58
TNFP01375 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC18.7■□□□□ 0.58
TNFP01375 AC009477.2-201ENST00000635976 171 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
TNFP01375 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
TNFP01375 NPNT-214ENST00000514622 2362 ntTSL 2 BASIC18.7■□□□□ 0.58
TNFP01375 STXBP2-203ENST00000441779 1914 ntTSL 2 BASIC18.7■□□□□ 0.58
TNFP01375 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
TNFP01375 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
TNFP01375 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
TNFP01375 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TNFP01375 PLIN2-201ENST00000276914 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
TNFP01375 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC18.7■□□□□ 0.58
TNFP01375 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TNFP01375 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
TNFP01375 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC18.69■□□□□ 0.58
TNFP01375 SPHK1-207ENST00000590959 1851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
TNFP01375 CPAMD8-202ENST00000388925 5355 ntTSL 5 BASIC18.69■□□□□ 0.58
TNFP01375 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC18.69■□□□□ 0.58
TNFP01375 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TNFP01375 HIST2H2AB-201ENST00000331128 393 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
TNFP01375 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC18.69■□□□□ 0.58
TNFP01375 RASGRP2-205ENST00000377489 583 ntTSL 3 BASIC18.69■□□□□ 0.58
TNFP01375 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC18.69■□□□□ 0.58
TNFP01375 AC022616.7-201ENST00000525383 220 ntBASIC18.69■□□□□ 0.58
TNFP01375 AC079385.1-202ENST00000549203 569 ntTSL 4 BASIC18.69■□□□□ 0.58
TNFP01375 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
TNFP01375 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC18.69■□□□□ 0.58
TNFP01375 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
TNFP01375 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC18.69■□□□□ 0.58
TNFP01375 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
TNFP01375 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TNFP01375 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC18.69■□□□□ 0.58
TNFP01375 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC18.69■□□□□ 0.58
TNFP01375 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC18.69■□□□□ 0.58
TNFP01375 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
TNFP01375 PER3-203ENST00000377541 1524 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
TNFP01375 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
TNFP01375 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
TNFP01375 BEST2-201ENST00000042931 1908 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TNFP01375 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC18.68■□□□□ 0.58
TNFP01375 LRRC75A-201ENST00000409083 2656 ntAPPRIS P3 TSL 2 BASIC18.68■□□□□ 0.58
TNFP01375 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TNFP01375 KRT8P45-201ENST00000414328 1447 ntBASIC18.68■□□□□ 0.58
TNFP01375 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TNFP01375 TNFRSF19-202ENST00000382258 1625 ntAPPRIS P4 TSL 1 (best) BASIC18.68■□□□□ 0.58
TNFP01375 RBPMS-210ENST00000520191 1613 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
TNFP01375 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
TNFP01375 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
TNFP01375 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 102.8 ms