Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC18.73■□□□□ 0.59
SIX3O95343 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SIX3O95343 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SIX3O95343 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
SIX3O95343 POU5F1-201ENST00000259915 1420 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
SIX3O95343 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
SIX3O95343 IFFO1-212ENST00000619571 2724 ntTSL 2 BASIC18.73■□□□□ 0.59
SIX3O95343 CBFA2T2-201ENST00000342704 2864 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SIX3O95343 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SIX3O95343 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SIX3O95343 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
SIX3O95343 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SIX3O95343 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC18.72■□□□□ 0.59
SIX3O95343 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SIX3O95343 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SIX3O95343 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SIX3O95343 GAS7-202ENST00000396115 929 ntTSL 5 BASIC18.72■□□□□ 0.59
SIX3O95343 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC18.72■□□□□ 0.59
SIX3O95343 RNA5SP413-201ENST00000516373 109 ntBASIC18.72■□□□□ 0.59
SIX3O95343 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC18.72■□□□□ 0.59
SIX3O95343 NFE2-204ENST00000553070 1523 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SIX3O95343 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SIX3O95343 BCAP29-202ENST00000379117 1946 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
SIX3O95343 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SIX3O95343 DCLK2-207ENST00000635524 2153 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
SIX3O95343 USP49-202ENST00000373010 2446 ntTSL 5 BASIC18.72■□□□□ 0.59
SIX3O95343 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
SIX3O95343 TMEM155-201ENST00000337677 2313 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
SIX3O95343 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC18.72■□□□□ 0.59
SIX3O95343 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SIX3O95343 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
SIX3O95343 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
SIX3O95343 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC18.72■□□□□ 0.59
SIX3O95343 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SIX3O95343 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC18.71■□□□□ 0.59
SIX3O95343 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SIX3O95343 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
SIX3O95343 KREMEN2-206ENST00000575885 1798 ntTSL 2 BASIC18.71■□□□□ 0.59
SIX3O95343 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC18.71■□□□□ 0.59
SIX3O95343 ZNF326-202ENST00000361911 1538 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SIX3O95343 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SIX3O95343 CDK11A-205ENST00000378633 2458 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SIX3O95343 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC18.71■□□□□ 0.59
SIX3O95343 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SIX3O95343 PFN3-201ENST00000358571 530 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
SIX3O95343 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
SIX3O95343 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SIX3O95343 RNF135-204ENST00000443677 1261 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SIX3O95343 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SIX3O95343 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
SIX3O95343 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC18.71■□□□□ 0.59
SIX3O95343 PRKY-204ENST00000533551 1019 ntBASIC18.71■□□□□ 0.59
SIX3O95343 C17orf97-203ENST00000571106 736 ntAPPRIS ALT2 TSL 2 BASIC18.71■□□□□ 0.59
SIX3O95343 AC233263.1-201ENST00000578059 224 ntBASIC18.71■□□□□ 0.59
SIX3O95343 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC18.71■□□□□ 0.59
SIX3O95343 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SIX3O95343 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC18.71■□□□□ 0.59
SIX3O95343 CASD1-201ENST00000297273 3942 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SIX3O95343 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SIX3O95343 SLC29A2-201ENST00000311161 2262 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
SIX3O95343 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC18.71■□□□□ 0.59
SIX3O95343 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SIX3O95343 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
SIX3O95343 YY1AP1-213ENST00000405763 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
SIX3O95343 NBPF21P-201ENST00000425093 1451 ntBASIC18.71■□□□□ 0.59
SIX3O95343 C1orf210-202ENST00000523677 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
SIX3O95343 ULK3-217ENST00000568667 1470 ntTSL 5 BASIC18.71■□□□□ 0.59
SIX3O95343 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
SIX3O95343 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC18.7■□□□□ 0.58
SIX3O95343 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
SIX3O95343 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
SIX3O95343 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC18.7■□□□□ 0.58
SIX3O95343 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SIX3O95343 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SIX3O95343 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
SIX3O95343 AC087457.1-201ENST00000503496 2727 ntTSL 2 BASIC18.7■□□□□ 0.58
SIX3O95343 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
SIX3O95343 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SIX3O95343 ABHD14A-201ENST00000273596 1062 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SIX3O95343 RRS1-201ENST00000320270 1706 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
SIX3O95343 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SIX3O95343 FEM1AP3-201ENST00000403722 1741 ntBASIC18.7■□□□□ 0.58
SIX3O95343 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC18.7■□□□□ 0.58
SIX3O95343 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC18.7■□□□□ 0.58
SIX3O95343 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC18.7■□□□□ 0.58
SIX3O95343 AP003097.1-201ENST00000530657 1135 ntBASIC18.7■□□□□ 0.58
SIX3O95343 AC073912.1-201ENST00000546264 587 ntTSL 3 BASIC18.7■□□□□ 0.58
SIX3O95343 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC18.7■□□□□ 0.58
SIX3O95343 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC18.7■□□□□ 0.58
SIX3O95343 GAS2L1-210ENST00000621062 2483 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SIX3O95343 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC18.7■□□□□ 0.58
SIX3O95343 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC18.7■□□□□ 0.58
SIX3O95343 SNAP47-201ENST00000315781 2367 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
SIX3O95343 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SIX3O95343 FBXL18-203ENST00000453700 1932 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
SIX3O95343 SLC3A2-202ENST00000377889 1993 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SIX3O95343 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
SIX3O95343 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
SIX3O95343 P4HB-203ENST00000439918 1502 ntTSL 5 BASIC18.69■□□□□ 0.58
SIX3O95343 ODF3L2-202ENST00000382696 1393 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 61.8 ms