Protein–RNA interactions for Protein: A0A0B4J280

TRAV40, T-cell receptor alpha variable 40 (Fragment), humanhuman

Predictions only

Length 105 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV40A0A0B4J280 AC148477.3-202ENST00000376617 1766 ntTSL 2 BASIC15.61■□□□□ 0.09
TRAV40A0A0B4J280 TYMS-201ENST00000323224 1327 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
TRAV40A0A0B4J280 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC15.61■□□□□ 0.09
TRAV40A0A0B4J280 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC15.61■□□□□ 0.09
TRAV40A0A0B4J280 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC15.61■□□□□ 0.09
TRAV40A0A0B4J280 ZNF821-221ENST00000611294 1833 ntTSL 3 BASIC15.61■□□□□ 0.09
TRAV40A0A0B4J280 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRAV40A0A0B4J280 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRAV40A0A0B4J280 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRAV40A0A0B4J280 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRAV40A0A0B4J280 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRAV40A0A0B4J280 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRAV40A0A0B4J280 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC15.61■□□□□ 0.09
TRAV40A0A0B4J280 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
TRAV40A0A0B4J280 C6orf89-203ENST00000373685 1400 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
TRAV40A0A0B4J280 KRT8P11-201ENST00000409686 1436 ntBASIC15.6■□□□□ 0.09
TRAV40A0A0B4J280 AC092338.2-201ENST00000568827 1415 ntBASIC15.6■□□□□ 0.09
TRAV40A0A0B4J280 CHD1L-201ENST00000361293 2484 ntTSL 2 BASIC15.6■□□□□ 0.09
TRAV40A0A0B4J280 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC15.6■□□□□ 0.09
TRAV40A0A0B4J280 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC15.6■□□□□ 0.09
TRAV40A0A0B4J280 ZNF815P-204ENST00000434898 1737 ntBASIC15.6■□□□□ 0.09
TRAV40A0A0B4J280 GABRD-205ENST00000638771 1707 ntAPPRIS ALT2 TSL 3 BASIC15.6■□□□□ 0.09
TRAV40A0A0B4J280 RAB34-204ENST00000395245 1766 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TRAV40A0A0B4J280 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC15.6■□□□□ 0.09
TRAV40A0A0B4J280 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
TRAV40A0A0B4J280 PRKAR2A-206ENST00000454963 1849 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
TRAV40A0A0B4J280 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC15.6■□□□□ 0.09
TRAV40A0A0B4J280 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TRAV40A0A0B4J280 MRPL52-201ENST00000311892 1042 ntTSL 3 BASIC15.6■□□□□ 0.09
TRAV40A0A0B4J280 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC15.6■□□□□ 0.09
TRAV40A0A0B4J280 AC104076.2-201ENST00000448912 469 ntBASIC15.6■□□□□ 0.09
TRAV40A0A0B4J280 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
TRAV40A0A0B4J280 CA15P1-201ENST00000481698 905 ntBASIC15.6■□□□□ 0.09
TRAV40A0A0B4J280 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TRAV40A0A0B4J280 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC15.6■□□□□ 0.09
TRAV40A0A0B4J280 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
TRAV40A0A0B4J280 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC15.6■□□□□ 0.09
TRAV40A0A0B4J280 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC15.6■□□□□ 0.09
TRAV40A0A0B4J280 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC15.6■□□□□ 0.09
TRAV40A0A0B4J280 SLC22A17-211ENST00000637426 1563 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
TRAV40A0A0B4J280 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC15.6■□□□□ 0.09
TRAV40A0A0B4J280 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC15.6■□□□□ 0.09
TRAV40A0A0B4J280 RTBDN-201ENST00000322912 1328 ntAPPRIS P3 TSL 1 (best) BASIC15.6■□□□□ 0.09
TRAV40A0A0B4J280 ARFIP2-204ENST00000445086 1300 ntTSL 2 BASIC15.6■□□□□ 0.09
TRAV40A0A0B4J280 TH-206ENST00000381178 1910 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
TRAV40A0A0B4J280 LINC01521-201ENST00000504184 1943 ntBASIC15.6■□□□□ 0.09
TRAV40A0A0B4J280 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC15.6■□□□□ 0.09
TRAV40A0A0B4J280 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC15.6■□□□□ 0.09
TRAV40A0A0B4J280 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
TRAV40A0A0B4J280 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
TRAV40A0A0B4J280 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC15.6■□□□□ 0.09
TRAV40A0A0B4J280 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC15.6■□□□□ 0.09
TRAV40A0A0B4J280 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
TRAV40A0A0B4J280 RBFOX1-215ENST00000553186 2196 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
TRAV40A0A0B4J280 LPAR2-202ENST00000542587 2546 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
TRAV40A0A0B4J280 ACAA1-201ENST00000301810 1540 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
TRAV40A0A0B4J280 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
TRAV40A0A0B4J280 IL17C-201ENST00000244241 1044 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
TRAV40A0A0B4J280 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
TRAV40A0A0B4J280 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
TRAV40A0A0B4J280 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC15.59■□□□□ 0.09
TRAV40A0A0B4J280 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC15.59■□□□□ 0.09
TRAV40A0A0B4J280 AK4P3-201ENST00000418260 669 ntBASIC15.59■□□□□ 0.09
TRAV40A0A0B4J280 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC15.59■□□□□ 0.09
TRAV40A0A0B4J280 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC15.59■□□□□ 0.09
TRAV40A0A0B4J280 GXYLT1P6-201ENST00000456472 1187 ntBASIC15.59■□□□□ 0.09
TRAV40A0A0B4J280 SAMD5-201ENST00000367474 6089 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
TRAV40A0A0B4J280 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
TRAV40A0A0B4J280 FKBP3-202ENST00000396062 1346 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
TRAV40A0A0B4J280 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC15.59■□□□□ 0.09
TRAV40A0A0B4J280 FAM187A-202ENST00000412523 1748 ntTSL 1 (best) BASIC15.59■□□□□ 0.09
TRAV40A0A0B4J280 DHRS3-204ENST00000616661 1722 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
TRAV40A0A0B4J280 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
TRAV40A0A0B4J280 AC104417.2-201ENST00000562989 1793 ntBASIC15.59■□□□□ 0.09
TRAV40A0A0B4J280 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
TRAV40A0A0B4J280 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
TRAV40A0A0B4J280 SPON2-203ENST00000431380 1802 ntAPPRIS P1 TSL 5 BASIC15.59■□□□□ 0.09
TRAV40A0A0B4J280 GSTZ1-204ENST00000393734 1424 ntTSL 5 BASIC15.59■□□□□ 0.09
TRAV40A0A0B4J280 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC15.59■□□□□ 0.09
TRAV40A0A0B4J280 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
TRAV40A0A0B4J280 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC15.59■□□□□ 0.09
TRAV40A0A0B4J280 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC15.59■□□□□ 0.09
TRAV40A0A0B4J280 KLHL21-206ENST00000610898 1945 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
TRAV40A0A0B4J280 RAB11FIP4-201ENST00000394744 1968 ntTSL 2 BASIC15.58■□□□□ 0.09
TRAV40A0A0B4J280 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.09
TRAV40A0A0B4J280 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC15.58■□□□□ 0.09
TRAV40A0A0B4J280 C21orf91-203ENST00000400559 1593 ntAPPRIS ALT1 TSL 5 BASIC15.58■□□□□ 0.09
TRAV40A0A0B4J280 ZBTB7B-201ENST00000292176 2129 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.08
TRAV40A0A0B4J280 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC15.58■□□□□ 0.08
TRAV40A0A0B4J280 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
TRAV40A0A0B4J280 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
TRAV40A0A0B4J280 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC15.58■□□□□ 0.08
TRAV40A0A0B4J280 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC15.58■□□□□ 0.08
TRAV40A0A0B4J280 FGF8-201ENST00000320185 799 ntAPPRIS P4 TSL 1 (best) BASIC15.58■□□□□ 0.08
TRAV40A0A0B4J280 BX664615.1-201ENST00000443558 458 ntBASIC15.58■□□□□ 0.08
TRAV40A0A0B4J280 RNF146-204ENST00000476956 884 ntTSL 2 BASIC15.58■□□□□ 0.08
TRAV40A0A0B4J280 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC15.58■□□□□ 0.08
TRAV40A0A0B4J280 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC15.58■□□□□ 0.08
TRAV40A0A0B4J280 AC087388.1-201ENST00000571370 1112 ntBASIC15.58■□□□□ 0.08
TRAV40A0A0B4J280 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC15.58■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms